Wall clock time and date at job start Mon Mar 30 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 117.00141 * 2 1 4 4 C 1.38748 * 120.05374 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94240 * 180.02562 * 4 3 2 6 6 C 1.38278 * 120.05581 * 0.02883 * 5 4 3 7 7 C 1.38243 * 120.11341 * 359.95267 * 6 5 4 8 8 C 1.50699 * 119.97264 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47056 * 160.00133 * 8 7 6 10 10 C 1.53001 * 109.47280 * 279.99759 * 8 7 6 11 11 C 1.50699 * 109.47189 * 296.34653 * 10 8 7 12 12 H 1.08003 * 120.00084 * 355.38368 * 11 10 8 13 13 C 1.37880 * 120.00438 * 175.11136 * 11 10 8 14 14 N 1.31506 * 120.00194 * 180.27533 * 13 11 10 15 15 Si 1.86798 * 119.99598 * 0.26937 * 13 11 10 16 16 H 1.48499 * 109.46962 * 90.00150 * 15 13 11 17 17 H 1.48494 * 109.47233 * 210.00230 * 15 13 11 18 18 H 1.48500 * 109.47317 * 330.00544 * 15 13 11 19 19 N 1.46898 * 109.47549 * 39.99754 * 8 7 6 20 20 C 1.46903 * 111.00018 * 62.20311 * 19 8 7 21 21 C 1.46896 * 111.00396 * 186.15273 * 19 8 7 22 22 C 1.38166 * 120.05704 * 0.27554 * 7 6 5 23 23 H 1.08996 * 109.47343 * 59.99691 * 1 2 3 24 24 H 1.09003 * 109.47407 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46636 * 299.99544 * 1 2 3 26 26 H 1.08002 * 120.03352 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.96824 * 180.02562 * 5 4 3 28 28 H 1.08006 * 119.94498 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47480 * 176.34156 * 10 8 7 30 30 H 1.08998 * 109.46987 * 56.34116 * 10 8 7 31 31 H 0.97002 * 120.00329 * 179.97438 * 14 13 11 32 32 H 1.08992 * 109.47205 * 63.95239 * 20 19 8 33 33 H 1.08995 * 109.47566 * 183.96137 * 20 19 8 34 34 H 1.09006 * 109.46711 * 303.95840 * 20 19 8 35 35 H 1.09004 * 109.46732 * 66.44058 * 21 19 8 36 36 H 1.09000 * 109.47454 * 186.43045 * 21 19 8 37 37 H 1.09001 * 109.47386 * 306.43725 * 21 19 8 38 38 H 1.07994 * 120.02921 * 179.74021 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3019 3.6757 -0.0017 7 6 4.0560 2.5170 -0.0018 8 6 5.5608 2.5981 -0.0031 9 1 5.9758 1.6535 0.3484 10 6 6.0555 2.8751 -1.4242 11 6 5.6894 1.7182 -2.3179 12 1 5.2239 0.8383 -1.8989 13 6 5.9435 1.7853 -3.6714 14 7 5.6192 0.7780 -4.4521 15 14 6.7485 3.3071 -4.3962 16 1 8.2242 3.1421 -4.3794 17 1 6.2870 3.4925 -5.7954 18 1 6.3743 4.4967 -3.5899 19 7 5.9935 3.6842 0.8863 20 6 5.5805 3.4259 2.2722 21 6 7.4455 3.8891 0.7994 22 6 3.4311 1.2847 -0.0061 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.2128 2.3204 0.0014 27 1 1.3340 4.5113 0.0008 28 1 3.7923 4.6380 -0.0025 29 1 7.1384 2.9982 -1.4144 30 1 5.5896 3.7860 -1.8000 31 1 5.7976 0.8253 -5.4044 32 1 6.0823 2.5311 2.6401 33 1 5.8512 4.2772 2.8968 34 1 4.5011 3.2778 2.3080 35 1 7.7014 4.2580 -0.1939 36 1 7.7551 4.6180 1.5484 37 1 7.9573 2.9437 0.9790 38 1 4.0207 0.3799 -0.0104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259742103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:29 Heat of formation + Delta-G solvation = -4.447328 kcal Electronic energy + Delta-G solvation = -18638.347444 eV Core-core repulsion = 15867.444584 eV Total energy + Delta-G solvation = -2770.902860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.76567 -38.12589 -36.10845 -33.03077 -31.36036 -30.02130 -29.16799 -27.04767 -26.83987 -25.45929 -22.20883 -21.99680 -21.52303 -19.28697 -17.26736 -16.81358 -15.72559 -15.46553 -15.39304 -14.76800 -14.56500 -14.54063 -13.73020 -13.45082 -13.11781 -12.78814 -12.55042 -12.20839 -12.05480 -11.96054 -11.60918 -11.49088 -11.29317 -11.09640 -10.80572 -10.69488 -10.47348 -9.98020 -9.87792 -9.75230 -9.13073 -8.48851 -8.14683 -7.86636 -7.61011 -5.98784 -3.96321 1.92524 2.06215 3.33300 3.41360 3.45732 3.63759 4.30472 4.49317 4.53827 5.16205 5.26947 5.31311 5.36361 5.39932 5.53168 5.56126 5.62127 5.72340 5.82357 5.86098 5.98940 6.04125 6.16487 6.19525 6.26976 6.31677 6.48745 6.59699 6.83283 6.97339 7.07206 7.22583 7.25938 7.33538 7.55204 7.66489 7.85815 7.89613 8.57295 9.06479 9.62837 11.14307 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.009037 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.564634 B = 3097.688063 C = 4244.422208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.220 4.220 5 C -0.094 4.094 6 C -0.133 4.133 7 C 0.000 4.000 8 C 0.131 3.869 9 H 0.045 0.955 10 C -0.003 4.003 11 C -0.515 4.515 12 H 0.076 0.924 13 C 0.070 3.930 14 N -0.901 5.901 15 Si 0.873 3.127 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.263 1.263 19 N -0.544 5.544 20 C 0.024 3.976 21 C 0.027 3.973 22 C -0.128 4.128 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.018 0.982 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.019 0.981 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.024 0.976 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 4.433 11.717 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.074 3.926 4 C -0.239 4.239 5 C -0.112 4.112 6 C -0.151 4.151 7 C 0.000 4.000 8 C 0.024 3.976 9 H 0.063 0.937 10 C -0.041 4.041 11 C -0.553 4.553 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.540 5.540 15 Si 0.700 3.300 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.187 1.187 19 N -0.268 5.268 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.147 4.147 23 H 0.071 0.929 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.144 0.856 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.204 4.614 11.379 13.757 hybrid contribution 0.487 0.058 -0.432 0.654 sum -5.717 4.672 10.947 13.204 Atomic orbital electron populations 1.22940 0.79349 1.03223 1.00912 1.86066 1.20599 1.27481 1.89192 1.18897 0.92233 0.83728 0.97709 1.21016 0.99115 0.92632 1.11142 1.20795 0.94722 0.96366 0.99292 1.20881 0.92865 0.98733 1.02637 1.19401 0.94941 0.91780 0.93927 1.20689 0.90364 0.91310 0.95216 0.93692 1.19715 0.95876 0.98431 0.90062 1.21074 1.40269 1.02045 0.91939 0.90556 1.24946 0.95259 0.95853 0.97075 1.69908 1.48134 1.31119 1.04860 0.86880 0.79848 0.84736 0.78505 1.20405 1.21475 1.18735 1.62022 1.13696 1.44326 1.06732 1.22377 1.01330 0.99152 0.89603 1.22366 0.87536 0.99719 1.02548 1.20235 0.90930 0.98457 1.05105 0.92922 0.88825 0.93220 0.86491 0.86665 0.85559 0.96376 0.95284 0.92844 0.96214 0.92131 0.91367 0.90754 0.92326 0.95693 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.60 10.50 -19.44 -0.20 -5.80 16 3 C 0.12 2.23 6.69 -39.22 -0.26 1.96 16 4 C -0.22 -3.63 9.04 -39.44 -0.36 -3.99 16 5 C -0.09 -1.53 10.04 -39.61 -0.40 -1.93 16 6 C -0.13 -2.43 8.61 -39.56 -0.34 -2.77 16 7 C 0.00 0.00 3.25 -104.65 -0.34 -0.34 16 8 C 0.13 2.68 1.70 -68.87 -0.12 2.56 16 9 H 0.05 0.95 8.01 -51.93 -0.42 0.54 16 10 C 0.00 -0.08 3.23 -27.88 -0.09 -0.17 16 11 C -0.51 -14.53 9.06 -34.44 -0.31 -14.85 16 12 H 0.08 2.32 6.83 -52.48 -0.36 1.96 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 15 Si 0.87 21.87 27.57 -169.99 -4.69 17.18 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.26 -6.36 6.41 56.52 0.36 -5.99 16 19 N -0.54 -9.37 4.17 -244.59 -1.02 -10.39 16 20 C 0.02 0.35 9.27 60.07 0.56 0.90 16 21 C 0.03 0.41 8.87 60.06 0.53 0.95 16 22 C -0.13 -2.63 8.63 -39.43 -0.34 -2.97 16 23 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 26 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 27 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.13 2.25 7.71 -52.48 -0.40 1.84 16 29 H 0.02 0.42 5.92 -51.93 -0.31 0.12 16 30 H 0.03 0.72 6.87 -51.93 -0.36 0.36 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.07 1.02 6.56 -51.93 -0.34 0.68 16 35 H 0.07 1.23 6.53 -51.93 -0.34 0.89 16 36 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 37 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.13 2.65 7.81 -52.49 -0.41 2.24 16 LS Contribution 305.29 15.07 4.60 4.60 Total: -1.00 -31.71 305.29 -6.87 -38.58 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.76 Total: 0.38 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.57 Total: -17.32 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.25 Total: -37.61 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.20 Total: -5.80 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.69 Total: 17.18 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.71 -6.87 -38.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259742103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.131 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds