Wall clock time and date at job start Mon Mar 30 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47319 * 2 1 4 4 C 1.53000 * 109.47656 * 120.00111 * 2 1 3 5 5 H 1.09003 * 109.47338 * 176.99078 * 4 2 1 6 6 C 1.50696 * 109.47010 * 56.98523 * 4 2 1 7 7 H 1.08000 * 120.00548 * 245.85407 * 6 4 2 8 8 C 1.37886 * 119.99985 * 65.85792 * 6 4 2 9 9 N 1.31514 * 119.99578 * 7.71076 * 8 6 4 10 10 Si 1.86796 * 120.00138 * 187.71425 * 8 6 4 11 11 H 1.48494 * 109.47605 * 59.99471 * 10 8 6 12 12 H 1.48501 * 109.47254 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46927 * 299.99601 * 10 8 6 14 14 C 1.50705 * 109.47020 * 296.99056 * 4 2 1 15 15 C 1.38118 * 120.83305 * 66.63258 * 14 4 2 16 16 N 1.32545 * 119.19722 * 179.78806 * 15 14 4 17 17 C 1.31793 * 121.01307 * 0.48320 * 16 15 14 18 18 N 1.31751 * 121.82732 * 359.77006 * 17 16 15 19 19 C 1.32990 * 120.68941 * 359.97438 * 18 17 16 20 20 N 1.38545 * 120.52939 * 179.97438 * 19 18 17 21 21 C 1.46901 * 110.99572 * 304.89980 * 20 19 18 22 22 C 1.46895 * 111.00301 * 68.85690 * 20 19 18 23 23 H 1.09002 * 109.46834 * 308.87436 * 1 2 3 24 24 H 1.08998 * 109.47503 * 68.87601 * 1 2 3 25 25 H 1.09004 * 109.46885 * 188.87901 * 1 2 3 26 26 H 1.09007 * 109.47054 * 240.00107 * 2 1 3 27 27 H 1.09000 * 109.47572 * 182.73823 * 3 2 1 28 28 H 1.09001 * 109.46685 * 302.73738 * 3 2 1 29 29 H 1.09002 * 109.47179 * 62.73332 * 3 2 1 30 30 H 0.96996 * 119.99488 * 180.02562 * 9 8 6 31 31 H 1.08000 * 120.40092 * 0.02891 * 15 14 4 32 32 H 1.08003 * 119.08495 * 179.75091 * 17 16 15 33 33 H 1.08998 * 109.47498 * 60.00383 * 21 20 19 34 34 H 1.09010 * 109.46876 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47156 * 299.99695 * 21 20 19 36 36 H 1.08991 * 109.47206 * 64.18584 * 22 20 19 37 37 H 1.08999 * 109.47292 * 184.19056 * 22 20 19 38 38 H 1.09001 * 109.46716 * 304.18903 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1288 -0.7682 1.2226 6 6 1.4777 -2.1188 1.2871 7 1 0.7873 -2.4022 2.0677 8 6 1.8447 -3.0360 0.3251 9 7 2.7967 -2.7428 -0.5336 10 14 0.9898 -4.6947 0.2417 11 1 -0.4626 -4.4920 0.0084 12 1 1.5631 -5.4916 -0.8726 13 1 1.1890 -5.4193 1.5226 14 6 1.5996 0.0309 2.4786 15 6 0.2631 0.1128 2.8174 16 7 -0.0877 0.7791 3.9082 17 6 0.8167 1.3691 4.6638 18 7 2.1014 1.3210 4.3756 19 6 2.5318 0.6673 3.3004 20 7 3.8835 0.6193 3.0002 21 6 4.4511 1.9712 2.9108 22 6 4.6124 -0.1939 3.9826 23 1 -0.3633 0.6450 0.8001 24 1 -0.3634 0.3703 -0.9586 25 1 -0.3633 -1.0154 0.1586 26 1 1.8933 -0.5138 -0.8900 27 1 3.1289 1.4430 -0.0491 28 1 1.6371 1.9703 -0.8645 29 1 1.7172 1.9420 0.9135 30 1 3.0546 -3.3879 -1.2105 31 1 -0.4866 -0.3637 2.2032 32 1 0.4957 1.9072 5.5435 33 1 4.3230 2.4830 3.8646 34 1 5.5130 1.9045 2.6737 35 1 3.9387 2.5294 2.1272 36 1 4.2685 -1.2266 3.9262 37 1 5.6801 -0.1542 3.7666 38 1 4.4296 0.1957 4.9840 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259803815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:35 Heat of formation + Delta-G solvation = 53.078867 kcal Electronic energy + Delta-G solvation = -19413.560385 eV Core-core repulsion = 16677.444799 eV Total energy + Delta-G solvation = -2736.115586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69893 -36.94688 -36.31957 -32.32187 -32.05676 -30.77868 -27.39395 -27.13073 -26.51606 -24.97079 -23.95707 -21.93120 -21.50062 -18.70986 -17.21987 -16.98983 -16.11131 -15.03577 -14.78691 -14.38789 -14.00411 -13.84129 -13.51838 -13.19846 -12.85332 -12.62025 -12.46127 -12.03567 -11.76064 -11.56316 -11.40530 -11.19575 -11.08956 -10.90839 -10.57660 -10.21275 -9.91566 -9.89342 -9.79205 -9.26654 -9.17280 -8.72418 -8.32172 -8.29191 -8.07015 -6.06379 -4.08544 1.58982 1.73549 3.28962 3.34477 3.37482 4.02455 4.34446 4.44174 4.72208 4.88267 5.26547 5.44689 5.59852 5.65665 5.77108 5.87655 5.92545 6.03263 6.09465 6.12014 6.22081 6.23648 6.29635 6.41136 6.44526 6.66242 6.84027 6.87910 6.98510 7.13651 7.37490 7.41931 7.54404 7.64979 7.73238 7.91712 8.01091 8.31153 8.67943 8.92466 9.53100 11.01574 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.008918 C = 0.008484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.254291 B = 3138.942451 C = 3299.475192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.139 4.139 4 C 0.092 3.908 5 H 0.070 0.930 6 C -0.514 4.514 7 H 0.053 0.947 8 C 0.072 3.928 9 N -0.880 5.880 10 Si 0.884 3.116 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.278 1.278 14 C -0.089 4.089 15 C 0.135 3.865 16 N -0.530 5.530 17 C 0.263 3.737 18 N -0.556 5.556 19 C 0.313 3.687 20 N -0.477 5.477 21 C 0.031 3.969 22 C 0.033 3.967 23 H 0.037 0.963 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 6.795 4.544 8.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.196 4.196 4 C 0.072 3.928 5 H 0.088 0.912 6 C -0.552 4.552 7 H 0.071 0.929 8 C -0.131 4.131 9 N -0.517 5.517 10 Si 0.712 3.288 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.204 1.204 14 C -0.094 4.094 15 C -0.030 4.030 16 N -0.244 5.244 17 C -0.027 4.027 18 N -0.273 5.273 19 C 0.076 3.924 20 N -0.199 5.199 21 C -0.116 4.116 22 C -0.114 4.114 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.192 0.808 32 H 0.197 0.803 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.627 6.990 4.737 8.467 hybrid contribution -0.246 -0.961 0.008 0.992 sum 0.381 6.029 4.745 7.682 Atomic orbital electron populations 1.22071 0.97655 1.01887 0.98541 1.21067 0.93952 0.92876 1.01993 1.21885 1.00618 0.98327 0.98812 1.17862 0.99271 0.91315 0.84359 0.91182 1.20971 1.27250 0.95113 1.11825 0.92884 1.24860 0.94567 0.97829 0.95864 1.69935 1.27643 1.35746 1.18410 0.86785 0.80190 0.84239 0.77621 1.20113 1.21294 1.20389 1.22139 0.93024 0.95030 0.99227 1.23456 0.95721 0.92484 0.91293 1.68337 1.39719 1.10071 1.06268 1.24318 0.84137 0.95991 0.98292 1.68253 1.19511 1.20480 1.19093 1.19995 0.91249 0.92103 0.89027 1.59888 0.98652 1.14048 1.47282 1.22359 0.99907 0.88433 1.00948 1.22374 0.98229 0.98308 0.92514 0.94437 0.95233 0.91089 0.89323 0.93199 0.94744 0.95139 0.92837 0.80825 0.80272 0.94417 0.91011 0.91617 0.90723 0.90895 0.94878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 7.58 37.15 0.28 -2.57 16 2 C -0.08 -1.72 2.60 -90.62 -0.24 -1.96 16 3 C -0.14 -2.66 8.95 37.16 0.33 -2.32 16 4 C 0.09 2.11 1.77 -92.92 -0.16 1.94 16 5 H 0.07 1.80 7.01 -51.93 -0.36 1.44 16 6 C -0.51 -12.93 6.54 -34.44 -0.23 -13.15 16 7 H 0.05 1.35 7.35 -52.49 -0.39 0.96 16 8 C 0.07 1.85 5.25 -17.82 -0.09 1.76 16 9 N -0.88 -23.63 12.11 55.43 0.67 -22.96 16 10 Si 0.88 20.29 29.54 -169.99 -5.02 15.26 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C -0.09 -1.86 3.35 -104.15 -0.35 -2.21 16 15 C 0.13 2.69 8.23 -17.29 -0.14 2.55 16 16 N -0.53 -10.01 10.43 -14.67 -0.15 -10.16 16 17 C 0.26 4.57 12.28 -92.19 -1.13 3.44 16 18 N -0.56 -10.29 9.64 -13.81 -0.13 -10.43 16 19 C 0.31 6.13 5.28 -154.78 -0.82 5.32 16 20 N -0.48 -8.62 3.82 -188.80 -0.72 -9.34 16 21 C 0.03 0.47 9.40 60.06 0.56 1.03 16 22 C 0.03 0.53 9.56 60.06 0.57 1.10 16 23 H 0.04 0.69 5.40 -51.93 -0.28 0.41 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 1.49 6.63 -51.93 -0.34 1.14 16 26 H 0.09 2.16 6.94 -51.93 -0.36 1.80 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.03 0.58 6.96 -51.93 -0.36 0.22 16 30 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.17 3.40 5.68 -52.49 -0.30 3.10 16 32 H 0.18 2.43 8.06 -52.48 -0.42 2.01 16 33 H 0.04 0.56 7.78 -51.93 -0.40 0.15 16 34 H 0.07 0.92 8.07 -51.92 -0.42 0.50 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 38 H 0.03 0.51 7.95 -51.93 -0.41 0.10 16 LS Contribution 302.56 15.07 4.56 4.56 Total: -1.00 -27.14 302.56 -7.92 -35.07 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.72 Total: 3.07 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.41 Total: -5.08 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.34 Total: -52.89 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.14 -7.92 -35.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259803815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.148 kcal (2) G-P(sol) polarization free energy of solvation -27.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds