Wall clock time and date at job start Mon Mar 30 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47319 * 2 1 4 4 C 1.53000 * 109.47656 * 120.00111 * 2 1 3 5 5 H 1.09003 * 109.47338 * 176.99078 * 4 2 1 6 6 C 1.50696 * 109.47010 * 56.98523 * 4 2 1 7 7 H 1.08000 * 120.00548 * 245.85407 * 6 4 2 8 8 C 1.37886 * 119.99985 * 65.85792 * 6 4 2 9 9 N 1.31514 * 119.99578 * 7.71076 * 8 6 4 10 10 Si 1.86796 * 120.00138 * 187.71425 * 8 6 4 11 11 H 1.48494 * 109.47605 * 59.99471 * 10 8 6 12 12 H 1.48501 * 109.47254 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46927 * 299.99601 * 10 8 6 14 14 C 1.50705 * 109.47020 * 296.99056 * 4 2 1 15 15 C 1.38118 * 120.83305 * 66.63258 * 14 4 2 16 16 N 1.32545 * 119.19722 * 179.78806 * 15 14 4 17 17 C 1.31793 * 121.01307 * 0.48320 * 16 15 14 18 18 N 1.31751 * 121.82732 * 359.77006 * 17 16 15 19 19 C 1.32990 * 120.68941 * 359.97438 * 18 17 16 20 20 N 1.38545 * 120.52939 * 179.97438 * 19 18 17 21 21 C 1.46901 * 110.99572 * 304.89980 * 20 19 18 22 22 C 1.46895 * 111.00301 * 68.85690 * 20 19 18 23 23 H 1.09002 * 109.46834 * 308.87436 * 1 2 3 24 24 H 1.08998 * 109.47503 * 68.87601 * 1 2 3 25 25 H 1.09004 * 109.46885 * 188.87901 * 1 2 3 26 26 H 1.09007 * 109.47054 * 240.00107 * 2 1 3 27 27 H 1.09000 * 109.47572 * 182.73823 * 3 2 1 28 28 H 1.09001 * 109.46685 * 302.73738 * 3 2 1 29 29 H 1.09002 * 109.47179 * 62.73332 * 3 2 1 30 30 H 0.96996 * 119.99488 * 180.02562 * 9 8 6 31 31 H 1.08000 * 120.40092 * 0.02891 * 15 14 4 32 32 H 1.08003 * 119.08495 * 179.75091 * 17 16 15 33 33 H 1.08998 * 109.47498 * 60.00383 * 21 20 19 34 34 H 1.09010 * 109.46876 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47156 * 299.99695 * 21 20 19 36 36 H 1.08991 * 109.47206 * 64.18584 * 22 20 19 37 37 H 1.08999 * 109.47292 * 184.19056 * 22 20 19 38 38 H 1.09001 * 109.46716 * 304.18903 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1288 -0.7682 1.2226 6 6 1.4777 -2.1188 1.2871 7 1 0.7873 -2.4022 2.0677 8 6 1.8447 -3.0360 0.3251 9 7 2.7967 -2.7428 -0.5336 10 14 0.9898 -4.6947 0.2417 11 1 -0.4626 -4.4920 0.0084 12 1 1.5631 -5.4916 -0.8726 13 1 1.1890 -5.4193 1.5226 14 6 1.5996 0.0309 2.4786 15 6 0.2631 0.1128 2.8174 16 7 -0.0877 0.7791 3.9082 17 6 0.8167 1.3691 4.6638 18 7 2.1014 1.3210 4.3756 19 6 2.5318 0.6673 3.3004 20 7 3.8835 0.6193 3.0002 21 6 4.4511 1.9712 2.9108 22 6 4.6124 -0.1939 3.9826 23 1 -0.3633 0.6450 0.8001 24 1 -0.3634 0.3703 -0.9586 25 1 -0.3633 -1.0154 0.1586 26 1 1.8933 -0.5138 -0.8900 27 1 3.1289 1.4430 -0.0491 28 1 1.6371 1.9703 -0.8645 29 1 1.7172 1.9420 0.9135 30 1 3.0546 -3.3879 -1.2105 31 1 -0.4866 -0.3637 2.2032 32 1 0.4957 1.9072 5.5435 33 1 4.3230 2.4830 3.8646 34 1 5.5130 1.9045 2.6737 35 1 3.9387 2.5294 2.1272 36 1 4.2685 -1.2266 3.9262 37 1 5.6801 -0.1542 3.7666 38 1 4.4296 0.1957 4.9840 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259803815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:34 Heat of formation + Delta-G solvation = 39.047654 kcal Electronic energy + Delta-G solvation = -19414.168824 eV Core-core repulsion = 16677.444799 eV Total energy + Delta-G solvation = -2736.724025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.18277 -38.32139 -38.00887 -34.11668 -33.65857 -32.31741 -29.01894 -28.52787 -28.09461 -26.37292 -25.69355 -23.56671 -22.92439 -20.43198 -18.77009 -18.40222 -17.92467 -16.68862 -16.44005 -15.77468 -15.49527 -15.37279 -15.01197 -14.69372 -14.42518 -14.31565 -14.10961 -13.31213 -13.23192 -13.01564 -12.88930 -12.78310 -12.72382 -12.64241 -12.32058 -11.91404 -11.65182 -11.50754 -11.36442 -11.00866 -10.87083 -10.44081 -10.08379 -9.84669 -9.49555 -8.04222 -6.10451 0.08567 0.23407 1.44603 1.47077 1.52465 2.47815 2.67031 2.91311 3.27152 3.41259 3.42132 4.07019 4.23681 4.32740 4.40229 4.43798 4.53904 4.58339 4.61509 4.66298 4.78739 4.89673 4.89937 4.92053 4.93816 5.10251 5.16993 5.29403 5.47158 5.65811 5.72797 5.78523 5.87566 6.00410 6.07437 6.15515 6.30974 6.40282 6.96858 7.21109 7.53176 9.02863 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.008918 C = 0.008484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.254291 B = 3138.942451 C = 3299.475192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 C -0.125 4.125 4 C 0.102 3.898 5 H 0.038 0.962 6 C -0.517 4.517 7 H 0.045 0.955 8 C 0.031 3.969 9 N -0.907 5.907 10 Si 0.934 3.066 11 H -0.269 1.269 12 H -0.288 1.288 13 H -0.279 1.279 14 C -0.114 4.114 15 C 0.133 3.867 16 N -0.536 5.536 17 C 0.268 3.732 18 N -0.557 5.557 19 C 0.316 3.684 20 N -0.499 5.499 21 C 0.035 3.965 22 C 0.038 3.962 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.173 0.827 32 H 0.221 0.779 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 7.878 5.521 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.182 4.182 4 C 0.083 3.917 5 H 0.056 0.944 6 C -0.555 4.555 7 H 0.064 0.936 8 C -0.169 4.169 9 N -0.545 5.545 10 Si 0.761 3.239 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.205 1.205 14 C -0.120 4.120 15 C -0.031 4.031 16 N -0.250 5.250 17 C -0.021 4.021 18 N -0.275 5.275 19 C 0.079 3.921 20 N -0.222 5.222 21 C -0.112 4.112 22 C -0.109 4.109 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.190 0.810 32 H 0.238 0.762 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.224 8.078 5.723 9.902 hybrid contribution -0.098 -1.252 -0.217 1.274 sum 0.126 6.826 5.505 8.770 Atomic orbital electron populations 1.21950 0.96213 1.01217 0.99867 1.20947 0.95168 0.93896 0.99843 1.21715 1.00219 0.96715 0.99585 1.17551 0.97077 0.90902 0.86203 0.94412 1.21214 1.26637 0.96470 1.11199 0.93627 1.25432 0.95111 1.00522 0.95830 1.70044 1.28858 1.36569 1.19056 0.85990 0.79596 0.81083 0.77270 1.19415 1.21318 1.20513 1.21950 0.93912 0.96733 0.99362 1.23422 0.95299 0.92574 0.91782 1.68416 1.40038 1.10430 1.06087 1.25184 0.83625 0.94663 0.98626 1.68388 1.20028 1.20518 1.18580 1.20133 0.91874 0.91276 0.88773 1.59891 0.98322 1.15819 1.48121 1.22393 1.01001 0.86815 1.00953 1.22353 0.99388 0.96681 0.92461 0.93254 0.93626 0.92770 0.92557 0.93744 0.92890 0.95094 0.93103 0.81003 0.76245 0.93940 0.88717 0.92276 0.93059 0.88339 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 7.58 71.98 0.55 -4.72 16 2 C -0.08 -3.45 2.60 -10.79 -0.03 -3.47 16 3 C -0.13 -4.68 8.95 71.98 0.64 -4.03 16 4 C 0.10 4.79 1.77 -12.29 -0.02 4.76 16 5 H 0.04 2.00 7.01 -2.39 -0.02 1.98 16 6 C -0.52 -26.48 6.54 25.60 0.17 -26.31 16 7 H 0.05 2.35 7.35 -2.91 -0.02 2.33 16 8 C 0.03 1.63 5.25 84.66 0.44 2.07 16 9 N -0.91 -49.81 12.11 21.45 0.26 -49.55 16 10 Si 0.93 41.97 29.54 68.60 2.03 44.00 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 C -0.11 -4.74 3.35 -19.56 -0.07 -4.81 16 15 C 0.13 5.21 8.23 84.56 0.70 5.91 16 16 N -0.54 -19.18 10.43 -200.31 -2.09 -21.27 16 17 C 0.27 8.60 12.28 180.90 2.22 10.82 16 18 N -0.56 -19.46 9.64 -197.61 -1.90 -21.36 16 19 C 0.32 12.09 5.28 133.16 0.70 12.80 16 20 N -0.50 -17.60 3.82 -751.22 -2.87 -20.46 16 21 C 0.04 1.00 9.40 127.69 1.20 2.20 16 22 C 0.04 1.18 9.56 127.69 1.22 2.40 16 23 H 0.05 1.78 5.40 -2.39 -0.01 1.77 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 2.27 6.63 -2.38 -0.02 2.25 16 26 H 0.06 2.80 6.94 -2.38 -0.02 2.79 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.03 1.13 6.96 -2.39 -0.02 1.12 16 30 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 31 H 0.17 6.66 5.68 -2.91 -0.02 6.65 16 32 H 0.22 5.06 8.06 -2.91 -0.02 5.04 16 33 H 0.04 1.16 7.78 -2.39 -0.02 1.14 16 34 H 0.09 2.21 8.07 -2.38 -0.02 2.19 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.10 2.50 8.05 -2.39 -0.02 2.48 16 38 H 0.04 1.15 7.95 -2.39 -0.02 1.13 16 Total: -1.00 -57.82 302.56 4.19 -53.63 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.04 Total: 17.39 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 7.73 Total: -2.38 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -6.60 Total: -112.64 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -57.82 4.19 -53.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259803815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.682 kcal (2) G-P(sol) polarization free energy of solvation -57.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds