Wall clock time and date at job start Mon Mar 30 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 C 1.50689 * 109.47373 * 120.00207 * 2 1 3 5 5 N 1.33478 * 125.50202 * 119.97690 * 4 2 1 6 6 C 1.30267 * 109.74985 * 179.97438 * 5 4 2 7 7 N 1.34742 * 108.04059 * 0.02562 * 6 5 4 8 8 N 1.30982 * 125.50071 * 299.97496 * 4 2 1 9 9 C 1.46304 * 125.05874 * 180.08111 * 7 6 5 10 10 C 1.53302 * 108.77315 * 16.99742 * 9 7 6 11 11 C 1.53151 * 109.48958 * 309.85966 * 10 9 7 12 12 C 1.50925 * 127.95268 * 179.87836 * 6 5 4 13 13 H 1.08998 * 109.71268 * 76.31857 * 12 6 5 14 14 C 1.53007 * 109.71792 * 315.72075 * 12 6 5 15 15 C 1.50697 * 109.46894 * 65.60193 * 14 12 6 16 16 H 1.08002 * 120.00599 * 0.02562 * 15 14 12 17 17 C 1.37880 * 119.99675 * 179.97438 * 15 14 12 18 18 N 1.31517 * 120.00210 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00019 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 15 23 23 H 1.08999 * 109.46881 * 299.99272 * 1 2 3 24 24 H 1.08991 * 109.47200 * 59.99855 * 1 2 3 25 25 H 1.09004 * 109.46721 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46881 * 240.00728 * 2 1 3 27 27 H 1.08997 * 109.47200 * 300.00512 * 3 2 1 28 28 H 1.09003 * 109.46706 * 60.00111 * 3 2 1 29 29 H 1.09001 * 109.47327 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.58313 * 257.21084 * 9 7 6 31 31 H 1.08999 * 109.58409 * 136.78426 * 9 7 6 32 32 H 1.09005 * 109.46550 * 189.85213 * 10 9 7 33 33 H 1.09002 * 109.46876 * 69.86909 * 10 9 7 34 34 H 1.09001 * 109.50662 * 309.24203 * 11 10 9 35 35 H 1.09005 * 109.54138 * 189.13013 * 11 10 9 36 36 H 1.08995 * 109.46729 * 305.60185 * 14 12 6 37 37 H 1.09007 * 109.46460 * 185.60041 * 14 12 6 38 38 H 0.96998 * 119.99640 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 2.8027 -1.8005 1.2358 6 6 3.0545 -2.1554 2.4636 7 7 2.4381 -1.2830 3.2849 8 7 1.7837 -0.3578 2.4670 9 6 2.4769 -1.3336 4.7466 10 6 3.6379 -2.2369 5.1783 11 6 3.5594 -3.5663 4.4220 12 6 3.8790 -3.3259 2.9410 13 1 4.9391 -3.1003 2.8256 14 6 3.5252 -4.5725 2.1274 15 6 3.9408 -4.3708 0.6930 16 1 4.4108 -3.4462 0.3917 17 6 3.7221 -5.3671 -0.2347 18 7 4.0844 -5.1910 -1.4867 19 14 2.9100 -6.9666 0.2863 20 1 3.9521 -7.9348 0.7127 21 1 1.9839 -6.7060 1.4176 22 1 2.1484 -7.5305 -0.8570 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.5382 -1.7399 5.1231 31 1 2.6281 -0.3296 5.1430 32 1 3.5732 -2.4243 6.2502 33 1 4.5841 -1.7455 4.9520 34 1 2.5549 -3.9792 4.5149 35 1 4.2813 -4.2674 4.8411 36 1 2.4496 -4.7432 2.1734 37 1 4.0481 -5.4357 2.5393 38 1 3.9302 -5.8918 -2.1393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259817189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:27 Heat of formation + Delta-G solvation = 44.476655 kcal Electronic energy + Delta-G solvation = -18788.252043 eV Core-core repulsion = 16051.763438 eV Total energy + Delta-G solvation = -2736.488606 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.20593 -38.48406 -36.17810 -35.55282 -33.99173 -31.57117 -30.84898 -29.02864 -28.07415 -25.50035 -24.29349 -23.58141 -22.35517 -20.72478 -19.99354 -18.70443 -17.53544 -17.10596 -16.30229 -16.13153 -15.86209 -15.19087 -15.11788 -14.85184 -14.39990 -14.13745 -13.98812 -13.47542 -13.24423 -13.09740 -13.03986 -12.81190 -12.40576 -12.32681 -12.17076 -12.03435 -11.89934 -11.77362 -11.65779 -11.40631 -11.13908 -10.65218 -10.52459 -10.50240 -10.06793 -8.10157 -6.08400 0.71823 1.36044 1.39737 1.48763 1.52548 2.10287 2.44919 3.13432 3.23156 3.42935 3.72671 3.80596 3.86893 3.97736 4.19929 4.31375 4.36055 4.37298 4.48773 4.60465 4.76559 4.79937 4.83760 4.89646 4.93671 4.95451 5.04064 5.06391 5.18424 5.28769 5.29899 5.30689 5.48484 5.60764 5.64525 5.77434 6.04845 6.50798 7.01970 7.42735 7.49804 9.07492 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.009174 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.529425 B = 3051.246717 C = 4311.878380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.007 4.007 3 C -0.126 4.126 4 C 0.200 3.800 5 N -0.549 5.549 6 C 0.285 3.715 7 N -0.388 5.388 8 N -0.335 5.335 9 C 0.117 3.883 10 C -0.124 4.124 11 C -0.120 4.120 12 C -0.001 4.001 13 H 0.091 0.909 14 C 0.003 3.997 15 C -0.486 4.486 16 H 0.044 0.956 17 C -0.003 4.003 18 N -0.957 5.957 19 Si 0.939 3.061 20 H -0.261 1.261 21 H -0.254 1.254 22 H -0.295 1.295 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.005 0.995 37 H 0.043 0.957 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 8.477 14.757 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.029 4.029 3 C -0.184 4.184 4 C -0.082 4.082 5 N -0.275 5.275 6 C 0.009 3.991 7 N -0.180 5.180 8 N -0.164 5.164 9 C -0.003 4.003 10 C -0.162 4.162 11 C -0.158 4.158 12 C -0.022 4.022 13 H 0.109 0.891 14 C -0.035 4.035 15 C -0.524 4.524 16 H 0.062 0.938 17 C -0.197 4.197 18 N -0.600 5.600 19 Si 0.763 3.237 20 H -0.185 1.185 21 H -0.178 1.178 22 H -0.221 1.221 23 H 0.081 0.919 24 H 0.111 0.889 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.023 0.977 37 H 0.062 0.938 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.877 8.872 14.647 17.805 hybrid contribution -0.156 -0.967 -0.581 1.139 sum -5.033 7.904 14.066 16.902 Atomic orbital electron populations 1.21714 0.92022 1.01365 1.03528 1.19622 0.97136 0.95908 0.90199 1.21703 1.00271 0.92944 1.03506 1.24889 0.95994 0.92931 0.94402 1.70562 1.19978 1.14536 1.22395 1.24663 0.95069 0.94009 0.85375 1.50725 1.37985 1.20424 1.08835 1.77565 1.21848 1.15051 1.01972 1.22272 1.02023 1.03558 0.72430 1.22010 0.97005 0.93975 1.03180 1.21870 1.03834 0.98960 0.91096 1.20135 0.97077 0.88952 0.96039 0.89142 1.19504 0.95886 0.93773 0.94380 1.21350 1.36828 1.01153 0.93101 0.93813 1.25879 0.96736 1.02232 0.94864 1.70097 1.51156 1.35104 1.03624 0.85842 0.79558 0.80218 0.78036 1.18540 1.17791 1.22142 0.91852 0.88933 0.94574 0.90676 0.89004 0.91895 0.94066 0.88572 0.87473 0.84554 0.90706 0.91310 0.87203 0.97712 0.93839 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.18 71.98 0.66 -3.05 16 2 C -0.01 -0.26 3.39 -11.54 -0.04 -0.30 16 3 C -0.13 -3.50 9.18 71.98 0.66 -2.84 16 4 C 0.20 8.51 6.66 138.48 0.92 9.43 16 5 N -0.55 -27.34 9.33 -179.31 -1.67 -29.02 16 6 C 0.29 12.13 6.96 138.36 0.96 13.09 16 7 N -0.39 -13.80 4.04 -338.33 -1.37 -15.17 16 8 N -0.34 -13.06 12.74 -51.08 -0.65 -13.71 16 9 C 0.12 2.62 7.30 86.52 0.63 3.25 16 10 C -0.12 -2.17 5.95 30.75 0.18 -1.98 16 11 C -0.12 -2.90 5.29 30.78 0.16 -2.73 16 12 C 0.00 -0.04 2.53 -11.33 -0.03 -0.07 16 13 H 0.09 3.45 8.14 -2.39 -0.02 3.44 16 14 C 0.00 0.13 3.50 29.85 0.10 0.23 16 15 C -0.49 -28.60 8.49 25.60 0.22 -28.38 16 16 H 0.04 2.91 7.20 -2.91 -0.02 2.89 16 17 C 0.00 -0.16 5.47 84.65 0.46 0.30 16 18 N -0.96 -62.82 13.96 21.45 0.30 -62.52 16 19 Si 0.94 45.72 27.47 68.60 1.88 47.60 16 20 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 22 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.14 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 34 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 35 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.00 0.22 7.20 -2.39 -0.02 0.21 16 37 H 0.04 1.84 7.57 -2.38 -0.02 1.82 16 38 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -79.85 306.36 4.36 -75.49 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.97 Total: 10.38 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 4.90 Total: -13.05 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -3.39 Total: -120.42 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Total: -79.85 4.36 -75.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.966 kcal (2) G-P(sol) polarization free energy of solvation -79.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds