Wall clock time and date at job start Mon Mar 30 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47211 * 2 1 4 4 C 1.50699 * 109.46890 * 120.00455 * 2 1 3 5 5 N 1.30840 * 126.46253 * 300.03740 * 4 2 1 6 6 N 1.28916 * 109.73925 * 180.02562 * 5 4 2 7 7 C 1.29837 * 109.47835 * 0.02562 * 6 5 4 8 8 N 1.34689 * 126.46549 * 120.00105 * 4 2 1 9 9 C 1.46261 * 128.84972 * 359.87907 * 8 4 2 10 10 C 1.53321 * 108.73001 * 197.09105 * 9 8 4 11 11 C 1.53148 * 109.55888 * 309.70717 * 10 9 8 12 12 H 1.08999 * 109.50040 * 309.48306 * 11 10 9 13 13 C 1.53000 * 109.50042 * 189.37762 * 11 10 9 14 14 C 1.50691 * 109.47120 * 175.00422 * 13 11 10 15 15 H 1.08005 * 120.00209 * 359.97438 * 14 13 11 16 16 C 1.37879 * 120.00109 * 179.97438 * 14 13 11 17 17 N 1.31518 * 120.00174 * 179.97438 * 16 14 13 18 18 Si 1.86792 * 119.99988 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47253 * 89.99666 * 18 16 14 20 20 H 1.48493 * 109.47308 * 209.99982 * 18 16 14 21 21 H 1.48503 * 109.47249 * 330.00042 * 18 16 14 22 22 C 1.50795 * 128.52489 * 179.84439 * 7 6 5 23 23 H 1.09001 * 109.47289 * 59.99924 * 1 2 3 24 24 H 1.09004 * 109.47613 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47354 * 299.99780 * 1 2 3 26 26 H 1.08997 * 109.46949 * 239.99889 * 2 1 3 27 27 H 1.09009 * 109.47172 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47450 * 299.99866 * 3 2 1 29 29 H 1.08998 * 109.47078 * 60.00592 * 3 2 1 30 30 H 1.08998 * 109.59701 * 77.31610 * 9 8 4 31 31 H 1.08999 * 109.71867 * 316.93522 * 9 8 4 32 32 H 1.09002 * 109.45498 * 69.73220 * 10 9 8 33 33 H 1.09000 * 109.45480 * 189.69155 * 10 9 8 34 34 H 1.09008 * 109.46683 * 295.00412 * 13 11 10 35 35 H 1.08996 * 109.47018 * 54.99773 * 13 11 10 36 36 H 0.96995 * 120.00019 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.73159 * 315.57642 * 22 7 6 38 38 H 1.09004 * 109.73256 * 76.21035 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 7 1.7948 -0.3760 2.4729 6 7 2.3818 -1.2050 3.2667 7 6 3.0154 -2.0979 2.5689 8 7 2.8097 -1.8100 1.2586 9 6 3.3511 -2.5797 0.1390 10 6 3.7998 -3.9517 0.6560 11 6 4.6919 -3.7689 1.8873 12 1 5.4755 -3.0447 1.6646 13 6 5.3263 -5.1098 2.2619 14 6 6.2977 -4.9065 3.3959 15 1 6.4480 -3.9195 3.8079 16 6 6.9947 -5.9806 3.9075 17 7 7.8429 -5.8031 4.8968 18 14 6.7343 -7.6877 3.1955 19 1 7.6935 -7.9122 2.0842 20 1 6.9565 -8.7048 4.2543 21 1 5.3458 -7.8033 2.6816 22 6 3.8425 -3.2597 3.0589 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 4.2045 -2.0530 -0.2880 31 1 2.5831 -2.7098 -0.6235 32 1 2.9241 -4.5418 0.9264 33 1 4.3590 -4.4684 -0.1240 34 1 4.5470 -5.8065 2.5714 35 1 5.8545 -5.5155 1.3992 36 1 8.3335 -6.5586 5.2564 37 1 4.4925 -2.9323 3.8703 38 1 3.1865 -4.0557 3.4114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259858980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:39 Heat of formation + Delta-G solvation = 47.471866 kcal Electronic energy + Delta-G solvation = -18398.429649 eV Core-core repulsion = 15662.070925 eV Total energy + Delta-G solvation = -2736.358723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.04661 -37.47277 -35.87825 -34.04221 -32.29863 -30.56166 -29.51407 -27.35355 -27.22885 -24.47441 -23.40675 -22.78722 -20.52869 -19.85636 -19.07151 -17.06777 -16.63685 -16.16627 -14.95598 -14.76549 -14.45631 -14.35995 -13.96338 -13.54795 -13.30310 -13.08130 -12.45792 -12.38045 -12.11771 -11.92776 -11.74596 -11.47380 -11.39326 -11.31045 -11.09152 -10.83786 -10.77623 -10.35452 -9.92189 -9.88748 -9.84392 -9.67146 -9.22355 -8.65136 -8.60696 -6.10298 -4.09777 2.07919 2.68499 3.15963 3.24552 3.33560 3.34337 4.20245 4.38243 4.47907 4.63640 4.72854 4.80094 4.90866 5.00400 5.08044 5.21793 5.28640 5.44362 5.46660 5.54938 5.65668 5.67108 5.73190 5.79161 5.99559 6.00741 6.04638 6.15999 6.23708 6.45109 6.51965 6.58032 6.67750 7.04026 7.13806 7.24560 7.68648 8.44772 8.93962 9.05246 9.50969 11.02791 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.044464 B = 0.004970 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.577460 B = 5632.741047 C = 5915.812754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.002 4.002 3 C -0.141 4.141 4 C 0.166 3.834 5 N -0.299 5.299 6 N -0.302 5.302 7 C 0.194 3.806 8 N -0.469 5.469 9 C 0.105 3.895 10 C -0.135 4.135 11 C -0.076 4.076 12 H 0.071 0.929 13 C -0.005 4.005 14 C -0.524 4.524 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.022 4.022 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.020 0.980 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.108 0.892 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 7.486 -14.220 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 C -0.199 4.199 4 C -0.102 4.102 5 N -0.139 5.139 6 N -0.141 5.141 7 C -0.073 4.073 8 N -0.160 5.160 9 C -0.018 4.018 10 C -0.173 4.173 11 C -0.096 4.096 12 H 0.090 0.910 13 C -0.043 4.043 14 C -0.561 4.561 15 H 0.093 0.907 16 C -0.133 4.133 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.061 4.061 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.994 8.146 -12.910 19.414 hybrid contribution 0.576 -1.717 -1.410 2.295 sum -11.418 6.430 -14.320 19.411 Atomic orbital electron populations 1.21792 0.92960 1.02237 1.02845 1.19484 0.96637 0.95695 0.90443 1.21792 1.01182 0.94068 1.02823 1.24458 0.97930 0.89910 0.97855 1.74348 1.20520 1.21507 0.97512 1.74075 1.11469 1.02975 1.25599 1.25284 1.01239 1.00581 0.80203 1.46037 1.38605 1.22685 1.08718 1.22051 0.99236 0.93371 0.87166 1.22119 1.01150 0.93785 1.00199 1.21208 0.95848 1.00973 0.91546 0.91021 1.19606 0.96079 0.91427 0.97146 1.21090 1.22303 0.96565 1.16185 0.90705 1.25016 0.94686 0.98946 0.94626 1.69908 1.26670 1.31485 1.25709 0.86818 0.79084 0.84629 0.78954 1.20360 1.21354 1.19044 1.20349 0.95854 0.90455 0.99465 0.91702 0.92751 0.91214 0.90083 0.92634 0.91694 0.91221 0.89525 0.89439 0.91017 0.89213 0.96178 0.96534 0.92642 0.87377 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.17 37.15 0.34 -0.95 16 2 C 0.00 -0.02 3.31 -91.78 -0.30 -0.32 16 3 C -0.14 -1.33 9.17 37.15 0.34 -0.99 16 4 C 0.17 2.48 6.58 -155.45 -1.02 1.46 16 5 N -0.30 -5.52 12.23 32.70 0.40 -5.12 16 6 N -0.30 -6.11 12.21 32.76 0.40 -5.71 16 7 C 0.19 3.53 7.75 -155.30 -1.20 2.32 16 8 N -0.47 -7.10 3.11 -110.86 -0.35 -7.45 16 9 C 0.10 1.20 6.50 -4.01 -0.03 1.17 16 10 C -0.13 -1.77 5.24 -26.49 -0.14 -1.91 16 11 C -0.08 -1.34 2.15 -90.33 -0.19 -1.53 16 12 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 13 C -0.01 -0.11 3.50 -27.89 -0.10 -0.21 16 14 C -0.52 -13.88 9.10 -34.44 -0.31 -14.20 16 15 H 0.07 2.15 7.38 -52.48 -0.39 1.76 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 18 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 22 C -0.02 -0.40 5.24 -27.62 -0.14 -0.54 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.68 7.45 -51.93 -0.39 0.29 16 27 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.76 7.93 -51.93 -0.41 0.35 16 32 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 33 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.02 0.43 7.17 -51.92 -0.37 0.06 16 35 H 0.02 0.34 7.55 -51.93 -0.39 -0.05 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.11 2.18 7.37 -51.93 -0.38 1.80 16 38 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -31.98 305.51 -7.84 -39.82 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.14 Total: -2.16 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.86 Total: -13.87 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 1.23 Total: -44.41 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.98 -7.84 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.294 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds