Wall clock time and date at job start Mon Mar 30 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47211 * 2 1 4 4 C 1.50699 * 109.46890 * 120.00455 * 2 1 3 5 5 N 1.30840 * 126.46253 * 300.03740 * 4 2 1 6 6 N 1.28916 * 109.73925 * 180.02562 * 5 4 2 7 7 C 1.29837 * 109.47835 * 0.02562 * 6 5 4 8 8 N 1.34689 * 126.46549 * 120.00105 * 4 2 1 9 9 C 1.46261 * 128.84972 * 359.87907 * 8 4 2 10 10 C 1.53321 * 108.73001 * 197.09105 * 9 8 4 11 11 C 1.53148 * 109.55888 * 309.70717 * 10 9 8 12 12 H 1.08999 * 109.50040 * 309.48306 * 11 10 9 13 13 C 1.53000 * 109.50042 * 189.37762 * 11 10 9 14 14 C 1.50691 * 109.47120 * 175.00422 * 13 11 10 15 15 H 1.08005 * 120.00209 * 359.97438 * 14 13 11 16 16 C 1.37879 * 120.00109 * 179.97438 * 14 13 11 17 17 N 1.31518 * 120.00174 * 179.97438 * 16 14 13 18 18 Si 1.86792 * 119.99988 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47253 * 89.99666 * 18 16 14 20 20 H 1.48493 * 109.47308 * 209.99982 * 18 16 14 21 21 H 1.48503 * 109.47249 * 330.00042 * 18 16 14 22 22 C 1.50795 * 128.52489 * 179.84439 * 7 6 5 23 23 H 1.09001 * 109.47289 * 59.99924 * 1 2 3 24 24 H 1.09004 * 109.47613 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47354 * 299.99780 * 1 2 3 26 26 H 1.08997 * 109.46949 * 239.99889 * 2 1 3 27 27 H 1.09009 * 109.47172 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47450 * 299.99866 * 3 2 1 29 29 H 1.08998 * 109.47078 * 60.00592 * 3 2 1 30 30 H 1.08998 * 109.59701 * 77.31610 * 9 8 4 31 31 H 1.08999 * 109.71867 * 316.93522 * 9 8 4 32 32 H 1.09002 * 109.45498 * 69.73220 * 10 9 8 33 33 H 1.09000 * 109.45480 * 189.69155 * 10 9 8 34 34 H 1.09008 * 109.46683 * 295.00412 * 13 11 10 35 35 H 1.08996 * 109.47018 * 54.99773 * 13 11 10 36 36 H 0.96995 * 120.00019 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.73159 * 315.57642 * 22 7 6 38 38 H 1.09004 * 109.73256 * 76.21035 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 7 1.7948 -0.3760 2.4729 6 7 2.3818 -1.2050 3.2667 7 6 3.0154 -2.0979 2.5689 8 7 2.8097 -1.8100 1.2586 9 6 3.3511 -2.5797 0.1390 10 6 3.7998 -3.9517 0.6560 11 6 4.6919 -3.7689 1.8873 12 1 5.4755 -3.0447 1.6646 13 6 5.3263 -5.1098 2.2619 14 6 6.2977 -4.9065 3.3959 15 1 6.4480 -3.9195 3.8079 16 6 6.9947 -5.9806 3.9075 17 7 7.8429 -5.8031 4.8968 18 14 6.7343 -7.6877 3.1955 19 1 7.6935 -7.9122 2.0842 20 1 6.9565 -8.7048 4.2543 21 1 5.3458 -7.8033 2.6816 22 6 3.8425 -3.2597 3.0589 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 4.2045 -2.0530 -0.2880 31 1 2.5831 -2.7098 -0.6235 32 1 2.9241 -4.5418 0.9264 33 1 4.3590 -4.4684 -0.1240 34 1 4.5470 -5.8065 2.5714 35 1 5.8545 -5.5155 1.3992 36 1 8.3335 -6.5586 5.2564 37 1 4.4925 -2.9323 3.8703 38 1 3.1865 -4.0557 3.4114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259858980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:38 Heat of formation + Delta-G solvation = 28.453345 kcal Electronic energy + Delta-G solvation = -18399.254354 eV Core-core repulsion = 15662.070925 eV Total energy + Delta-G solvation = -2737.183428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.31240 -38.78596 -36.79192 -35.53059 -34.13415 -31.86029 -30.93399 -28.79199 -28.05886 -25.90451 -24.44004 -24.25315 -22.05392 -20.91048 -20.38077 -18.91418 -17.88474 -17.37910 -16.38403 -15.99415 -15.90248 -15.45130 -15.22204 -14.86078 -14.52687 -14.18574 -14.00818 -13.60909 -13.34087 -13.13305 -12.95056 -12.77619 -12.43884 -12.35680 -12.21792 -12.16680 -12.11435 -11.84104 -11.61704 -11.34062 -11.25792 -11.10674 -10.95497 -10.71883 -9.99404 -8.23942 -6.28143 0.85541 1.39512 1.42543 1.53014 1.57058 1.82104 2.40105 3.10330 3.17893 3.42172 3.56814 3.71879 3.76696 3.93162 4.13923 4.27274 4.31648 4.35706 4.40091 4.57501 4.75900 4.79498 4.81037 4.92017 4.93801 4.98073 4.99690 5.04650 5.08308 5.13115 5.22701 5.33475 5.38609 5.43508 5.57726 5.70340 6.00790 6.32356 6.80797 7.36236 7.74261 8.93049 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.044464 B = 0.004970 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.577460 B = 5632.741047 C = 5915.812754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 C -0.138 4.138 4 C 0.184 3.816 5 N -0.341 5.341 6 N -0.345 5.345 7 C 0.180 3.820 8 N -0.466 5.466 9 C 0.099 3.901 10 C -0.126 4.126 11 C -0.070 4.070 12 H 0.058 0.942 13 C -0.002 4.002 14 C -0.526 4.526 15 H 0.030 0.970 16 C 0.001 3.999 17 N -0.956 5.956 18 Si 0.950 3.050 19 H -0.265 1.265 20 H -0.293 1.293 21 H -0.239 1.239 22 C -0.016 4.016 23 H 0.097 0.903 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.116 0.884 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.026 0.974 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.070 0.930 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.222 6.632 -18.616 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 C -0.196 4.196 4 C -0.085 4.085 5 N -0.180 5.180 6 N -0.184 5.184 7 C -0.089 4.089 8 N -0.156 5.156 9 C -0.022 4.022 10 C -0.164 4.164 11 C -0.090 4.090 12 H 0.077 0.923 13 C -0.040 4.040 14 C -0.564 4.564 15 H 0.048 0.952 16 C -0.195 4.195 17 N -0.597 5.597 18 Si 0.774 3.226 19 H -0.190 1.190 20 H -0.219 1.219 21 H -0.162 1.162 22 C -0.055 4.055 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.134 0.866 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.650 7.305 -17.337 23.243 hybrid contribution 1.097 -1.316 -0.017 1.714 sum -12.553 5.988 -17.354 22.240 Atomic orbital electron populations 1.21781 0.91933 1.02301 1.03438 1.19858 0.97383 0.95854 0.89235 1.21790 1.00682 0.93670 1.03469 1.25401 0.95768 0.88989 0.98308 1.74258 1.22188 1.22347 0.99190 1.73966 1.12766 1.04157 1.27513 1.25022 1.01639 1.00404 0.81809 1.46267 1.38146 1.22831 1.08399 1.22443 1.01297 0.91915 0.86512 1.22043 1.00539 0.95409 0.98381 1.21059 0.96151 0.98371 0.93377 0.92341 1.19558 0.95109 0.93808 0.95498 1.21479 1.22927 0.94645 1.17312 0.95174 1.26047 0.94423 1.04011 0.95048 1.70094 1.28654 1.32891 1.28073 0.85661 0.80553 0.78253 0.78160 1.19044 1.21947 1.16203 1.20141 0.95481 0.90783 0.99113 0.88432 0.92952 0.93328 0.86604 0.93398 0.88339 0.93315 0.87677 0.85052 0.90468 0.86369 0.95535 0.94779 0.92752 0.91129 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.17 71.98 0.66 -1.40 16 2 C 0.00 -0.04 3.31 -11.54 -0.04 -0.08 16 3 C -0.14 -2.22 9.17 71.98 0.66 -1.56 16 4 C 0.18 5.19 6.58 138.14 0.91 6.10 16 5 N -0.34 -12.73 12.23 -50.46 -0.62 -13.34 16 6 N -0.34 -14.48 12.21 -50.28 -0.61 -15.09 16 7 C 0.18 6.63 7.75 138.13 1.07 7.70 16 8 N -0.47 -13.14 3.11 -504.65 -1.57 -14.71 16 9 C 0.10 1.81 6.50 86.53 0.56 2.37 16 10 C -0.13 -2.81 5.24 30.75 0.16 -2.65 16 11 C -0.07 -2.39 2.15 -10.61 -0.02 -2.41 16 12 H 0.06 2.12 8.12 -2.39 -0.02 2.11 16 13 C 0.00 -0.10 3.50 29.85 0.10 0.00 16 14 C -0.53 -28.71 9.10 25.60 0.23 -28.48 16 15 H 0.03 1.85 7.38 -2.91 -0.02 1.83 16 16 C 0.00 0.05 5.47 84.65 0.46 0.51 16 17 N -0.96 -59.58 13.96 21.45 0.30 -59.28 16 18 Si 0.95 42.18 27.47 68.60 1.88 44.06 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 22 C -0.02 -0.59 5.24 30.02 0.16 -0.43 16 23 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.12 1.23 7.45 -2.39 -0.02 1.22 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.13 1.38 7.93 -2.39 -0.02 1.36 16 32 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 33 H 0.12 2.05 8.11 -2.39 -0.02 2.03 16 34 H 0.03 1.07 7.17 -2.38 -0.02 1.06 16 35 H 0.03 1.31 7.55 -2.39 -0.02 1.29 16 36 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.07 3.13 7.37 -2.39 -0.02 3.12 16 38 H 0.09 3.32 8.09 -2.38 -0.02 3.30 16 Total: -1.00 -75.28 305.51 5.27 -70.01 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.97 Total: 8.68 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.92 Total: -20.32 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -2.50 Total: -102.43 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.06 kcal Total: -75.28 5.27 -70.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.460 kcal (2) G-P(sol) polarization free energy of solvation -75.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds