Wall clock time and date at job start Mon Mar 30 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47181 * 240.00390 * 3 2 1 5 5 H 1.48501 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47168 * 120.00350 * 3 2 1 7 7 C 1.37877 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99483 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46915 * 174.93278 * 9 7 2 11 11 H 1.08996 * 109.45775 * 57.16823 * 10 9 7 12 12 C 1.53037 * 109.46145 * 297.19972 * 10 9 7 13 13 C 1.53119 * 109.28277 * 180.80534 * 12 10 9 14 14 C 1.53116 * 109.16010 * 57.65040 * 13 12 10 15 15 C 1.53041 * 109.28063 * 302.35194 * 14 13 12 16 16 N 1.46840 * 109.46514 * 177.14929 * 10 9 7 17 17 C 1.46900 * 111.00005 * 305.85073 * 16 10 9 18 18 C 1.50696 * 109.47272 * 300.48836 * 17 16 10 19 19 C 1.39868 * 126.04471 * 92.45487 * 18 17 16 20 20 N 1.30837 * 108.20511 * 179.97438 * 19 18 17 21 21 N 1.40080 * 108.20369 * 359.97438 * 20 19 18 22 22 H 0.97006 * 126.03795 * 179.97438 * 21 20 19 23 23 C 1.34947 * 107.92756 * 0.02562 * 21 20 19 24 24 H 0.96998 * 119.99557 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47488 * 54.93704 * 9 7 2 26 26 H 1.09001 * 109.47611 * 294.92713 * 9 7 2 27 27 H 1.09005 * 109.50150 * 60.86173 * 12 10 9 28 28 H 1.09003 * 109.53845 * 300.76610 * 12 10 9 29 29 H 1.09007 * 109.51865 * 297.75387 * 13 12 10 30 30 H 1.09001 * 109.57863 * 177.59405 * 13 12 10 31 31 H 1.08999 * 109.50462 * 182.40790 * 14 13 12 32 32 H 1.09003 * 109.53385 * 62.30816 * 14 13 12 33 33 H 1.08995 * 109.46043 * 299.16183 * 15 14 13 34 34 H 1.09002 * 109.45866 * 179.19387 * 15 14 13 35 35 H 1.08996 * 109.47605 * 180.48179 * 17 16 10 36 36 H 1.09008 * 109.47097 * 60.48117 * 17 16 10 37 37 H 1.08004 * 125.89695 * 0.22000 * 19 18 17 38 38 H 1.07999 * 126.12630 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2404 -3.6592 -0.1286 11 1 2.9644 -3.6104 0.6847 12 6 2.9720 -3.5598 -1.4691 13 6 3.9462 -4.7336 -1.6017 14 6 3.1698 -6.0475 -1.4784 15 6 2.4324 -6.0748 -0.1376 16 7 1.5126 -4.9327 -0.0600 17 6 0.6875 -5.0029 1.1533 18 6 1.5691 -4.8729 2.3685 19 6 1.8801 -3.6839 3.0363 20 7 2.6687 -3.9728 4.0396 21 7 2.8842 -5.3569 4.0423 22 1 3.4303 -5.8482 4.6759 23 6 2.1989 -5.8861 3.0072 24 1 -0.4849 0.8401 0.0004 25 1 0.5578 -2.5184 -0.8414 26 1 0.6946 -2.5974 0.9316 27 1 3.5247 -2.6213 -1.5133 28 1 2.2478 -3.5943 -2.2831 29 1 4.6944 -4.6771 -0.8109 30 1 4.4389 -4.6914 -2.5730 31 1 3.8637 -6.8865 -1.5292 32 1 2.4482 -6.1222 -2.2920 33 1 3.1555 -6.0147 0.6758 34 1 1.8671 -7.0029 -0.0529 35 1 0.1660 -5.9596 1.1833 36 1 -0.0411 -4.1921 1.1446 37 1 1.5268 -2.6981 2.7720 38 1 2.1597 -6.9311 2.7373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259876276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:35 Heat of formation + Delta-G solvation = 65.818211 kcal Electronic energy + Delta-G solvation = -19099.730635 eV Core-core repulsion = 16364.167468 eV Total energy + Delta-G solvation = -2735.563166 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97078 -38.46023 -33.67579 -33.27134 -31.17264 -30.88988 -29.57841 -27.08179 -25.48369 -23.57049 -22.19553 -21.51004 -20.46138 -19.75238 -18.68941 -17.25343 -16.37306 -15.27805 -14.55805 -14.41959 -14.20046 -14.10882 -13.61582 -13.45951 -13.10066 -12.65282 -12.51921 -12.06550 -11.98061 -11.59008 -11.16554 -11.01139 -10.76511 -10.69547 -10.37494 -10.23953 -10.15296 -9.84976 -9.61730 -9.24448 -9.04407 -8.96267 -8.26200 -8.18315 -7.58776 -5.93886 -3.94572 2.18615 3.18883 3.20045 3.37673 3.42187 3.45000 4.48571 4.72586 5.08242 5.22685 5.31943 5.38371 5.41722 5.50833 5.61326 5.88117 5.95801 6.01047 6.04385 6.13115 6.22842 6.32941 6.38552 6.44466 6.50805 6.60291 6.65674 6.89064 7.05164 7.08429 7.23697 7.52759 7.65601 7.72978 7.92074 7.96067 8.01756 8.17284 8.52411 9.11736 9.68464 11.17063 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.008610 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.923003 B = 3251.356360 C = 4135.853371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.031 3.969 10 C 0.094 3.906 11 H 0.030 0.970 12 C -0.101 4.101 13 C -0.123 4.123 14 C -0.113 4.113 15 C 0.056 3.944 16 N -0.525 5.525 17 C 0.126 3.874 18 C -0.254 4.254 19 C 0.079 3.921 20 N -0.305 5.305 21 N -0.489 5.489 22 H 0.432 0.568 23 C 0.050 3.950 24 H 0.260 0.740 25 H 0.026 0.974 26 H 0.019 0.981 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.194 0.806 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 -13.694 2.489 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.713 3.287 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.070 0.930 9 C -0.007 4.007 10 C -0.014 4.014 11 H 0.048 0.952 12 C -0.139 4.139 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.073 4.073 16 N -0.248 5.248 17 C -0.003 4.003 18 C -0.268 4.268 19 C -0.108 4.108 20 N -0.127 5.127 21 N -0.197 5.197 22 H 0.274 0.726 23 C -0.098 4.098 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.210 0.790 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.502 -13.122 3.027 14.200 hybrid contribution 0.960 0.372 0.342 1.085 sum 5.462 -12.750 3.369 14.274 Atomic orbital electron populations 1.69948 1.05878 1.26521 1.50860 1.24941 0.94739 0.98875 0.95523 0.86765 0.79678 0.83649 0.78561 1.20386 1.21405 1.20346 1.21137 0.92803 0.90881 1.50413 0.92952 1.19221 0.93813 0.90054 0.97568 1.21747 0.95691 0.88604 0.95312 0.95204 1.21538 0.97374 0.96901 0.98099 1.21646 0.98180 0.95844 1.00382 1.21549 0.98537 0.97063 0.97974 1.22019 0.94647 0.94220 0.96410 1.62395 1.24155 1.02826 1.35413 1.20627 0.94291 1.02255 0.83135 1.21055 1.09478 0.92272 1.03955 1.24254 0.94634 1.00403 0.91497 1.77353 1.21682 0.90437 1.23213 1.46314 1.41355 1.06557 1.25472 0.72580 1.22307 0.97099 0.99250 0.91114 0.93058 0.95584 0.96267 0.91016 0.91974 0.93232 0.92870 0.92895 0.91484 0.95498 0.92115 0.91512 0.88665 0.78977 0.81615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -13.90 8.30 -34.44 -0.29 -14.19 16 8 H 0.05 1.41 7.10 -52.49 -0.37 1.04 16 9 C 0.03 0.75 3.92 -27.88 -0.11 0.64 16 10 C 0.09 1.92 1.29 -67.72 -0.09 1.83 16 11 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 12 C -0.10 -1.96 5.14 -26.65 -0.14 -2.10 16 13 C -0.12 -1.94 6.00 -26.61 -0.16 -2.10 16 14 C -0.11 -1.60 6.09 -26.65 -0.16 -1.76 16 15 C 0.06 0.82 4.93 -3.83 -0.02 0.80 16 16 N -0.53 -9.23 4.69 -228.13 -1.07 -10.30 16 17 C 0.13 2.07 5.35 -4.98 -0.03 2.04 16 18 C -0.25 -4.13 3.98 -105.06 -0.42 -4.55 16 19 C 0.08 1.48 10.25 -17.37 -0.18 1.30 16 20 N -0.30 -5.43 12.70 30.62 0.39 -5.04 16 21 N -0.49 -6.63 7.36 30.45 0.22 -6.41 16 22 H 0.43 4.20 8.96 -182.61 -1.64 2.57 16 23 C 0.05 0.66 10.46 -17.22 -0.18 0.48 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.48 4.50 -51.93 -0.23 0.25 16 27 H 0.07 1.50 6.94 -51.93 -0.36 1.14 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.41 6.54 -51.93 -0.34 0.07 16 34 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.10 1.77 6.18 -51.92 -0.32 1.45 16 37 H 0.19 3.96 6.86 -52.48 -0.36 3.60 16 38 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -30.30 295.19 -9.06 -39.36 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.90 Total: 2.77 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.86 Total: -16.02 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.28 Total: -47.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.30 -9.06 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.177 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds