Wall clock time and date at job start Mon Mar 30 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47181 * 240.00390 * 3 2 1 5 5 H 1.48501 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47168 * 120.00350 * 3 2 1 7 7 C 1.37877 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99483 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46915 * 174.93278 * 9 7 2 11 11 H 1.08996 * 109.45775 * 57.16823 * 10 9 7 12 12 C 1.53037 * 109.46145 * 297.19972 * 10 9 7 13 13 C 1.53119 * 109.28277 * 180.80534 * 12 10 9 14 14 C 1.53116 * 109.16010 * 57.65040 * 13 12 10 15 15 C 1.53041 * 109.28063 * 302.35194 * 14 13 12 16 16 N 1.46840 * 109.46514 * 177.14929 * 10 9 7 17 17 C 1.46900 * 111.00005 * 305.85073 * 16 10 9 18 18 C 1.50696 * 109.47272 * 300.48836 * 17 16 10 19 19 C 1.39868 * 126.04471 * 92.45487 * 18 17 16 20 20 N 1.30837 * 108.20511 * 179.97438 * 19 18 17 21 21 N 1.40080 * 108.20369 * 359.97438 * 20 19 18 22 22 H 0.97006 * 126.03795 * 179.97438 * 21 20 19 23 23 C 1.34947 * 107.92756 * 0.02562 * 21 20 19 24 24 H 0.96998 * 119.99557 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47488 * 54.93704 * 9 7 2 26 26 H 1.09001 * 109.47611 * 294.92713 * 9 7 2 27 27 H 1.09005 * 109.50150 * 60.86173 * 12 10 9 28 28 H 1.09003 * 109.53845 * 300.76610 * 12 10 9 29 29 H 1.09007 * 109.51865 * 297.75387 * 13 12 10 30 30 H 1.09001 * 109.57863 * 177.59405 * 13 12 10 31 31 H 1.08999 * 109.50462 * 182.40790 * 14 13 12 32 32 H 1.09003 * 109.53385 * 62.30816 * 14 13 12 33 33 H 1.08995 * 109.46043 * 299.16183 * 15 14 13 34 34 H 1.09002 * 109.45866 * 179.19387 * 15 14 13 35 35 H 1.08996 * 109.47605 * 180.48179 * 17 16 10 36 36 H 1.09008 * 109.47097 * 60.48117 * 17 16 10 37 37 H 1.08004 * 125.89695 * 0.22000 * 19 18 17 38 38 H 1.07999 * 126.12630 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2404 -3.6592 -0.1286 11 1 2.9644 -3.6104 0.6847 12 6 2.9720 -3.5598 -1.4691 13 6 3.9462 -4.7336 -1.6017 14 6 3.1698 -6.0475 -1.4784 15 6 2.4324 -6.0748 -0.1376 16 7 1.5126 -4.9327 -0.0600 17 6 0.6875 -5.0029 1.1533 18 6 1.5691 -4.8729 2.3685 19 6 1.8801 -3.6839 3.0363 20 7 2.6687 -3.9728 4.0396 21 7 2.8842 -5.3569 4.0423 22 1 3.4303 -5.8482 4.6759 23 6 2.1989 -5.8861 3.0072 24 1 -0.4849 0.8401 0.0004 25 1 0.5578 -2.5184 -0.8414 26 1 0.6946 -2.5974 0.9316 27 1 3.5247 -2.6213 -1.5133 28 1 2.2478 -3.5943 -2.2831 29 1 4.6944 -4.6771 -0.8109 30 1 4.4389 -4.6914 -2.5730 31 1 3.8637 -6.8865 -1.5292 32 1 2.4482 -6.1222 -2.2920 33 1 3.1555 -6.0147 0.6758 34 1 1.8671 -7.0029 -0.0529 35 1 0.1660 -5.9596 1.1833 36 1 -0.0411 -4.1921 1.1446 37 1 1.5268 -2.6981 2.7720 38 1 2.1597 -6.9311 2.7373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259876276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:35 Heat of formation + Delta-G solvation = 44.821051 kcal Electronic energy + Delta-G solvation = -19100.641140 eV Core-core repulsion = 16364.167468 eV Total energy + Delta-G solvation = -2736.473671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.22313 -39.86297 -35.30752 -34.92903 -32.84409 -32.24521 -30.84842 -28.84101 -26.83587 -25.40883 -23.56546 -22.84407 -21.95907 -21.01006 -20.10882 -18.48619 -18.46266 -16.71004 -16.37970 -15.95031 -15.58132 -15.42345 -14.94354 -14.79549 -14.54380 -14.04723 -13.96057 -13.74843 -13.43375 -13.32331 -12.92489 -12.56582 -12.45451 -12.31106 -12.00221 -11.70039 -11.44116 -11.42212 -11.36572 -10.89084 -10.71772 -10.49676 -10.39202 -9.43584 -8.97773 -8.12246 -6.19161 1.01197 1.39782 1.41396 1.48780 1.84558 2.13891 2.43668 3.21248 3.35958 3.92315 4.08012 4.11367 4.17044 4.20199 4.35676 4.54710 4.70400 4.73635 4.81722 4.83791 4.89748 4.98351 5.10905 5.14957 5.17195 5.20224 5.34606 5.38919 5.52082 5.54078 5.64762 5.70309 5.87065 5.92068 6.25173 6.52674 6.54219 6.57530 6.77243 6.96512 7.47376 8.98949 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.008610 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.923003 B = 3251.356360 C = 4135.853371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.049 0.951 9 C 0.044 3.956 10 C 0.113 3.887 11 H 0.012 0.988 12 C -0.102 4.102 13 C -0.116 4.116 14 C -0.110 4.110 15 C 0.054 3.946 16 N -0.534 5.534 17 C 0.130 3.870 18 C -0.277 4.277 19 C 0.054 3.946 20 N -0.336 5.336 21 N -0.469 5.469 22 H 0.451 0.549 23 C 0.084 3.916 24 H 0.261 0.739 25 H -0.011 1.011 26 H 0.006 0.994 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.155 0.845 38 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -16.648 2.591 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.067 0.933 9 C 0.006 3.994 10 C 0.005 3.995 11 H 0.030 0.970 12 C -0.140 4.140 13 C -0.154 4.154 14 C -0.148 4.148 15 C -0.073 4.073 16 N -0.257 5.257 17 C 0.002 3.998 18 C -0.290 4.290 19 C -0.132 4.132 20 N -0.159 5.159 21 N -0.179 5.179 22 H 0.298 0.702 23 C -0.065 4.065 24 H 0.069 0.931 25 H 0.007 0.993 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.173 0.827 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.107 -16.085 3.144 17.491 hybrid contribution 0.459 1.222 0.357 1.353 sum 6.567 -14.864 3.502 16.623 Atomic orbital electron populations 1.70077 1.07343 1.27314 1.52045 1.25741 0.95561 1.02397 0.95323 0.85762 0.78520 0.79528 0.78818 1.19480 1.20877 1.19875 1.21468 0.92799 0.92294 1.49625 0.93310 1.19002 0.93781 0.91452 0.95132 1.21301 0.94089 0.88943 0.95199 0.96980 1.21480 0.97726 0.97878 0.96922 1.21588 0.97311 0.95138 1.01355 1.21572 0.98855 0.96833 0.97531 1.22175 0.94541 0.93826 0.96797 1.62341 1.24656 1.02412 1.36302 1.20530 0.93691 1.02567 0.83059 1.21008 1.11085 0.92228 1.04651 1.23858 0.96123 1.00102 0.93085 1.77256 1.22251 0.93067 1.23362 1.46307 1.40707 1.05193 1.25706 0.70216 1.22888 0.94083 1.00524 0.89003 0.93056 0.99303 0.97626 0.93543 0.93274 0.93304 0.91138 0.89442 0.91690 0.95375 0.88760 0.87974 0.92424 0.82750 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 2 C 0.01 0.44 5.46 84.65 0.46 0.91 16 3 Si 0.95 45.51 29.54 68.60 2.03 47.53 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.52 -29.83 8.30 25.60 0.21 -29.62 16 8 H 0.05 2.75 7.10 -2.91 -0.02 2.73 16 9 C 0.04 2.28 3.92 29.85 0.12 2.40 16 10 C 0.11 4.75 1.29 44.94 0.06 4.80 16 11 H 0.01 0.56 6.66 -2.39 -0.02 0.54 16 12 C -0.10 -4.03 5.14 30.65 0.16 -3.87 16 13 C -0.12 -3.44 6.00 30.67 0.18 -3.26 16 14 C -0.11 -2.68 6.09 30.65 0.19 -2.50 16 15 C 0.05 1.38 4.93 86.33 0.43 1.81 16 16 N -0.53 -18.31 4.69 -875.66 -4.11 -22.42 16 17 C 0.13 4.21 5.35 85.56 0.46 4.67 16 18 C -0.28 -8.72 3.98 -20.15 -0.08 -8.80 16 19 C 0.05 2.11 10.25 85.24 0.87 2.98 16 20 N -0.34 -11.95 12.70 -57.02 -0.72 -12.68 16 21 N -0.47 -11.41 7.36 -57.59 -0.42 -11.83 16 22 H 0.45 7.14 8.96 -213.33 -1.91 5.23 16 23 C 0.08 1.91 10.46 83.54 0.87 2.78 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H 0.01 0.31 4.50 -2.39 -0.01 0.30 16 27 H 0.05 2.01 6.94 -2.38 -0.02 2.00 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.45 8.14 -2.38 -0.02 1.44 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 0.73 6.54 -2.39 -0.02 0.71 16 34 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.10 2.55 8.08 -2.39 -0.02 2.53 16 36 H 0.06 2.27 6.18 -2.38 -0.01 2.26 16 37 H 0.16 7.07 6.86 -2.91 -0.02 7.05 16 38 H 0.22 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -70.17 295.19 0.13 -70.05 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.85 Total: 13.42 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 3.93 Total: -27.69 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -4.97 Total: -103.30 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.17 0.13 -70.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.868 kcal (2) G-P(sol) polarization free energy of solvation -70.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds