Wall clock time and date at job start Mon Mar 30 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47300 * 2 1 4 4 C 1.50707 * 109.47138 * 119.99894 * 2 1 3 5 5 N 1.33470 * 125.49676 * 300.02679 * 4 2 1 6 6 C 1.30336 * 109.72384 * 180.02562 * 5 4 2 7 7 N 1.34678 * 108.04172 * 359.91584 * 6 5 4 8 8 N 1.30971 * 125.49350 * 120.04769 * 4 2 1 9 9 C 1.46298 * 125.04440 * 180.14836 * 7 6 5 10 10 C 1.53299 * 108.77135 * 17.02168 * 9 7 6 11 11 H 1.09004 * 109.46636 * 69.85756 * 10 9 7 12 12 C 1.52998 * 109.47022 * 189.85144 * 10 9 7 13 13 C 1.50706 * 109.47348 * 295.00948 * 12 10 9 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 10 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46492 * 299.99554 * 17 15 13 21 21 C 1.53161 * 109.48601 * 309.85782 * 10 9 7 22 22 C 1.50925 * 127.90186 * 179.91539 * 6 5 4 23 23 H 1.09000 * 109.46916 * 299.99626 * 1 2 3 24 24 H 1.08992 * 109.47495 * 59.99850 * 1 2 3 25 25 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47328 * 240.00029 * 2 1 3 27 27 H 1.09005 * 109.47042 * 300.00229 * 3 2 1 28 28 H 1.09007 * 109.47259 * 59.99798 * 3 2 1 29 29 H 1.09000 * 109.47562 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.58638 * 257.23998 * 9 7 6 31 31 H 1.08997 * 109.58629 * 136.81197 * 9 7 6 32 32 H 1.09001 * 109.47671 * 175.01157 * 12 10 9 33 33 H 1.08998 * 109.47454 * 55.01154 * 12 10 9 34 34 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 35 35 H 1.09005 * 109.50833 * 189.11859 * 21 10 9 36 36 H 1.09000 * 109.50651 * 309.25004 * 21 10 9 37 37 H 1.08993 * 109.71800 * 76.25030 * 22 6 5 38 38 H 1.08995 * 109.75607 * 315.61882 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7780 -0.3516 2.4907 6 6 2.3637 -1.1786 3.3103 7 7 3.0151 -2.1014 2.5769 8 7 2.7892 -1.7793 1.2358 9 6 3.7963 -3.2108 3.1240 10 6 3.4122 -3.4063 4.5951 11 1 2.3984 -3.8022 4.6564 12 6 4.3842 -4.3900 5.2496 13 6 4.2297 -5.7474 4.6133 14 1 3.5099 -5.8938 3.8216 15 6 5.0109 -6.8010 5.0383 16 7 5.8912 -6.6213 5.9987 17 14 4.8199 -8.4833 4.2491 18 1 5.1106 -8.3843 2.7962 19 1 5.7683 -9.4363 4.8794 20 1 3.4292 -8.9663 4.4439 21 6 3.4796 -2.0609 5.3239 22 6 2.3488 -1.1549 4.8193 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 4.8592 -2.9801 3.0514 31 1 3.5789 -4.1212 2.5654 32 1 4.1664 -4.4615 6.3152 33 1 5.4063 -4.0378 5.1106 34 1 6.4411 -7.3625 6.2975 35 1 3.3663 -2.2215 6.3961 36 1 4.4412 -1.5874 5.1258 37 1 1.3907 -1.5253 5.1834 38 1 2.5079 -0.1364 5.1733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259903010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:35 Heat of formation + Delta-G solvation = 50.000761 kcal Electronic energy + Delta-G solvation = -18170.239779 eV Core-core repulsion = 15433.990717 eV Total energy + Delta-G solvation = -2736.249062 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.00524 -37.40589 -35.20377 -33.13187 -32.67514 -30.61888 -29.55453 -27.16644 -26.63534 -24.49897 -22.86682 -22.63779 -20.86986 -19.54358 -18.73875 -16.58136 -16.06818 -15.70263 -15.13819 -14.70038 -14.44201 -14.10325 -13.84205 -13.50568 -13.14700 -12.87017 -12.23779 -12.06275 -11.98257 -11.83153 -11.54694 -11.36200 -11.26751 -11.10720 -10.97373 -10.80087 -10.64339 -10.52367 -10.11874 -9.69671 -9.50197 -9.31776 -9.16028 -8.92554 -8.49180 -6.13676 -4.17788 1.98505 2.73066 3.15289 3.26349 3.31417 3.33925 4.13514 4.35269 4.58875 4.85147 5.01415 5.10871 5.14495 5.17179 5.23736 5.40554 5.55416 5.60838 5.67062 5.73661 5.83373 5.84393 5.88892 5.92978 6.10207 6.12987 6.21914 6.34145 6.42669 6.55955 6.64619 6.72596 6.78112 7.23161 7.45466 7.53953 7.82457 8.21246 8.48283 8.87293 9.48078 10.96994 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.033748 B = 0.004896 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.479294 B = 5717.694276 C = 6249.719478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.004 3.996 3 C -0.138 4.138 4 C 0.211 3.789 5 N -0.545 5.545 6 C 0.275 3.725 7 N -0.364 5.364 8 N -0.322 5.322 9 C 0.138 3.862 10 C -0.094 4.094 11 H 0.072 0.928 12 C 0.033 3.967 13 C -0.530 4.530 14 H 0.056 0.944 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.124 4.124 22 C -0.040 4.040 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.022 0.978 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 12.727 -6.038 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 C -0.197 4.197 4 C -0.071 4.071 5 N -0.273 5.273 6 C -0.001 4.001 7 N -0.153 5.153 8 N -0.151 5.151 9 C 0.018 3.982 10 C -0.114 4.114 11 H 0.090 0.910 12 C -0.005 4.005 13 C -0.568 4.568 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.162 4.162 22 C -0.080 4.080 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.989 12.438 -6.463 15.662 hybrid contribution 0.157 -1.286 -0.217 1.314 sum -6.832 11.151 -6.681 14.685 Atomic orbital electron populations 1.21754 0.93490 1.02090 1.02353 1.19385 0.96081 0.95172 0.91119 1.21756 1.01011 0.94535 1.02357 1.24159 0.96203 0.92871 0.93828 1.70035 1.27870 1.29522 0.99918 1.24272 0.91945 0.87026 0.96886 1.50550 1.38268 1.23333 1.03178 1.77868 1.22552 1.18036 0.96623 1.22187 0.94424 0.86277 0.95338 1.21709 1.02733 0.95817 0.91117 0.90988 1.19108 0.93249 0.92037 0.96058 1.21161 1.21105 0.94479 1.20036 0.92627 1.24978 0.95040 0.99033 0.94937 1.69934 1.22867 1.32165 1.28045 0.86673 0.78041 0.83815 0.79640 1.20157 1.21182 1.20163 1.21878 0.97488 0.95368 1.01512 1.20418 1.01457 1.02323 0.83768 0.91579 0.91994 0.92807 0.89468 0.91997 0.91585 0.92842 0.89667 0.88191 0.95271 0.95931 0.92732 0.89655 0.91488 0.88733 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 2 C 0.00 0.04 3.39 -91.77 -0.31 -0.27 16 3 C -0.14 -1.50 9.17 37.16 0.34 -1.16 16 4 C 0.21 3.58 6.65 -156.43 -1.04 2.54 16 5 N -0.54 -9.45 11.18 -8.03 -0.09 -9.54 16 6 C 0.28 4.70 7.72 -155.77 -1.20 3.50 16 7 N -0.36 -6.77 4.04 -58.29 -0.24 -7.01 16 8 N -0.32 -6.17 12.74 32.51 0.41 -5.75 16 9 C 0.14 2.58 6.23 -4.00 -0.02 2.56 16 10 C -0.09 -1.72 2.16 -90.38 -0.19 -1.92 16 11 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 12 C 0.03 0.76 4.43 -27.88 -0.12 0.64 16 13 C -0.53 -13.77 8.53 -34.44 -0.29 -14.06 16 14 H 0.06 1.42 7.10 -52.49 -0.37 1.04 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 17 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.12 -1.84 5.26 -26.43 -0.14 -1.98 16 22 C -0.04 -0.54 6.33 -27.55 -0.17 -0.72 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 31 H 0.10 1.99 7.29 -51.93 -0.38 1.61 16 32 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.02 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 36 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -29.87 311.30 -8.65 -38.52 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.22 Total: -1.67 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.92 Total: -10.47 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.83 Total: -46.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.87 -8.65 -38.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259903010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.521 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds