Wall clock time and date at job start Mon Mar 30 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47300 * 2 1 4 4 C 1.50707 * 109.47138 * 119.99894 * 2 1 3 5 5 N 1.33470 * 125.49676 * 300.02679 * 4 2 1 6 6 C 1.30336 * 109.72384 * 180.02562 * 5 4 2 7 7 N 1.34678 * 108.04172 * 359.91584 * 6 5 4 8 8 N 1.30971 * 125.49350 * 120.04769 * 4 2 1 9 9 C 1.46298 * 125.04440 * 180.14836 * 7 6 5 10 10 C 1.53299 * 108.77135 * 17.02168 * 9 7 6 11 11 H 1.09004 * 109.46636 * 69.85756 * 10 9 7 12 12 C 1.52998 * 109.47022 * 189.85144 * 10 9 7 13 13 C 1.50706 * 109.47348 * 295.00948 * 12 10 9 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 10 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46492 * 299.99554 * 17 15 13 21 21 C 1.53161 * 109.48601 * 309.85782 * 10 9 7 22 22 C 1.50925 * 127.90186 * 179.91539 * 6 5 4 23 23 H 1.09000 * 109.46916 * 299.99626 * 1 2 3 24 24 H 1.08992 * 109.47495 * 59.99850 * 1 2 3 25 25 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47328 * 240.00029 * 2 1 3 27 27 H 1.09005 * 109.47042 * 300.00229 * 3 2 1 28 28 H 1.09007 * 109.47259 * 59.99798 * 3 2 1 29 29 H 1.09000 * 109.47562 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.58638 * 257.23998 * 9 7 6 31 31 H 1.08997 * 109.58629 * 136.81197 * 9 7 6 32 32 H 1.09001 * 109.47671 * 175.01157 * 12 10 9 33 33 H 1.08998 * 109.47454 * 55.01154 * 12 10 9 34 34 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 35 35 H 1.09005 * 109.50833 * 189.11859 * 21 10 9 36 36 H 1.09000 * 109.50651 * 309.25004 * 21 10 9 37 37 H 1.08993 * 109.71800 * 76.25030 * 22 6 5 38 38 H 1.08995 * 109.75607 * 315.61882 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7780 -0.3516 2.4907 6 6 2.3637 -1.1786 3.3103 7 7 3.0151 -2.1014 2.5769 8 7 2.7892 -1.7793 1.2358 9 6 3.7963 -3.2108 3.1240 10 6 3.4122 -3.4063 4.5951 11 1 2.3984 -3.8022 4.6564 12 6 4.3842 -4.3900 5.2496 13 6 4.2297 -5.7474 4.6133 14 1 3.5099 -5.8938 3.8216 15 6 5.0109 -6.8010 5.0383 16 7 5.8912 -6.6213 5.9987 17 14 4.8199 -8.4833 4.2491 18 1 5.1106 -8.3843 2.7962 19 1 5.7683 -9.4363 4.8794 20 1 3.4292 -8.9663 4.4439 21 6 3.4796 -2.0609 5.3239 22 6 2.3488 -1.1549 4.8193 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 4.8592 -2.9801 3.0514 31 1 3.5789 -4.1212 2.5654 32 1 4.1664 -4.4615 6.3152 33 1 5.4063 -4.0378 5.1106 34 1 6.4411 -7.3625 6.2975 35 1 3.3663 -2.2215 6.3961 36 1 4.4412 -1.5874 5.1258 37 1 1.3907 -1.5253 5.1834 38 1 2.5079 -0.1364 5.1733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259903010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:35 Heat of formation + Delta-G solvation = 33.905466 kcal Electronic energy + Delta-G solvation = -18170.937723 eV Core-core repulsion = 15433.990717 eV Total energy + Delta-G solvation = -2736.947007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.34050 -38.80283 -36.33336 -34.92754 -34.07625 -32.21029 -30.90284 -28.35987 -28.02134 -26.00410 -24.38987 -23.83990 -22.42390 -20.72123 -20.12650 -18.52816 -17.50217 -17.08638 -16.55743 -16.27277 -15.78200 -15.18456 -15.14548 -14.75220 -14.46506 -14.25051 -13.73949 -13.54237 -13.34674 -13.02501 -12.93597 -12.81583 -12.53193 -12.42123 -12.35570 -12.09356 -12.08300 -11.90928 -11.66042 -11.35051 -11.08447 -10.96262 -10.64650 -10.56320 -10.28743 -8.21074 -6.30325 0.64502 1.35225 1.40288 1.40721 1.48312 1.86657 2.39440 2.96149 3.13720 3.36351 3.62688 3.81499 3.83425 3.98580 4.21688 4.24720 4.36928 4.42397 4.51405 4.61620 4.77360 4.83983 4.85575 4.94704 4.96694 4.99983 5.04053 5.11723 5.20697 5.35368 5.35476 5.41470 5.47914 5.50339 5.65758 5.81068 5.88905 6.20397 6.84123 7.14212 7.38891 8.89669 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.033748 B = 0.004896 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.479294 B = 5717.694276 C = 6249.719478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.002 4.002 3 C -0.131 4.131 4 C 0.214 3.786 5 N -0.553 5.553 6 C 0.272 3.728 7 N -0.379 5.379 8 N -0.362 5.362 9 C 0.148 3.852 10 C -0.082 4.082 11 H 0.069 0.931 12 C 0.040 3.960 13 C -0.540 4.540 14 H 0.056 0.944 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.950 3.050 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.116 4.116 22 C -0.033 4.033 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.014 0.986 33 H 0.003 0.997 34 H 0.264 0.736 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 13.925 -6.571 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.023 4.023 3 C -0.189 4.189 4 C -0.068 4.068 5 N -0.282 5.282 6 C -0.004 4.004 7 N -0.169 5.169 8 N -0.190 5.190 9 C 0.027 3.973 10 C -0.102 4.102 11 H 0.087 0.913 12 C 0.002 3.998 13 C -0.578 4.578 14 H 0.074 0.926 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.776 3.224 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.154 4.154 22 C -0.072 4.072 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.060 0.940 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.033 0.967 33 H 0.021 0.979 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.339 13.644 -7.006 17.458 hybrid contribution 0.551 -1.607 -0.080 1.701 sum -7.788 12.037 -7.086 15.993 Atomic orbital electron populations 1.21717 0.91975 1.01688 1.03574 1.19689 0.97270 0.95908 0.89457 1.21715 1.00317 0.93292 1.03567 1.25022 0.94728 0.92032 0.95050 1.70109 1.28272 1.29691 1.00155 1.25057 0.90795 0.86179 0.98349 1.50473 1.39199 1.23766 1.03467 1.77833 1.24356 1.19621 0.97206 1.21908 0.94215 0.85896 0.95328 1.21469 1.00907 0.96855 0.90937 0.91258 1.18941 0.93366 0.92140 0.95326 1.21584 1.20577 0.95913 1.19758 0.92598 1.25757 0.94939 1.02629 0.95510 1.70040 1.23907 1.33170 1.29505 0.85722 0.78188 0.79742 0.78760 1.19797 1.20890 1.19455 1.21800 0.98310 0.93317 1.01988 1.20577 1.01626 1.03659 0.81312 0.92243 0.88851 0.93998 0.88953 0.88884 0.92237 0.93867 0.90320 0.90143 0.96737 0.97874 0.92746 0.87957 0.91475 0.86848 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.18 71.98 0.66 -1.95 16 2 C 0.00 -0.05 3.39 -11.54 -0.04 -0.09 16 3 C -0.13 -2.55 9.17 71.98 0.66 -1.89 16 4 C 0.21 7.07 6.65 138.49 0.92 7.99 16 5 N -0.55 -18.43 11.18 -179.30 -2.01 -20.43 16 6 C 0.27 8.93 7.72 138.36 1.07 10.00 16 7 N -0.38 -14.09 4.04 -338.35 -1.37 -15.46 16 8 N -0.36 -13.87 12.74 -51.07 -0.65 -14.52 16 9 C 0.15 5.61 6.23 86.52 0.54 6.15 16 10 C -0.08 -2.99 2.16 -10.64 -0.02 -3.01 16 11 H 0.07 2.57 8.12 -2.38 -0.02 2.55 16 12 C 0.04 1.87 4.43 29.85 0.13 2.00 16 13 C -0.54 -28.45 8.53 25.60 0.22 -28.23 16 14 H 0.06 2.88 7.10 -2.91 -0.02 2.86 16 15 C 0.01 0.57 5.46 84.65 0.46 1.03 16 16 N -0.93 -53.37 13.29 21.45 0.28 -53.09 16 17 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 C -0.12 -3.25 5.26 30.79 0.16 -3.09 16 22 C -0.03 -0.79 6.33 30.06 0.19 -0.60 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 3.03 8.11 -2.39 -0.02 3.01 16 31 H 0.08 3.31 7.29 -2.39 -0.02 3.30 16 32 H 0.01 0.71 8.13 -2.39 -0.02 0.69 16 33 H 0.00 0.15 8.12 -2.39 -0.02 0.13 16 34 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 35 H 0.10 2.55 8.11 -2.38 -0.02 2.54 16 36 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 37 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -64.65 311.30 4.26 -60.38 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.02 Total: 9.84 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.95 Total: -11.69 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -3.74 Total: -103.50 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -64.65 4.26 -60.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259903010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.290 kcal (2) G-P(sol) polarization free energy of solvation -64.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds