Wall clock time and date at job start Mon Mar 30 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 C 1.53002 * 109.47327 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47333 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.00034 * 270.19324 * 5 4 3 7 7 C 1.38211 * 120.00175 * 180.23734 * 6 5 4 8 8 C 1.38260 * 120.00008 * 359.79887 * 7 6 5 9 9 C 1.38215 * 119.99680 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99534 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.46813 * 159.97826 * 10 9 8 12 12 N 1.46898 * 109.47445 * 39.97335 * 10 9 8 13 13 C 1.53001 * 109.46902 * 279.97011 * 10 9 8 14 14 C 1.50700 * 109.47241 * 185.00337 * 13 10 9 15 15 H 1.07997 * 119.99803 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00388 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99575 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00362 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46713 * 60.00046 * 18 16 14 20 20 H 1.48495 * 109.47226 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47058 * 300.00217 * 18 16 14 22 22 C 1.38211 * 120.00162 * 89.99512 * 5 4 3 23 23 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47321 * 300.00250 * 1 2 3 25 25 H 1.09003 * 109.46697 * 60.00137 * 1 2 3 26 26 H 1.09004 * 109.47189 * 59.99475 * 3 2 1 27 27 H 1.09006 * 109.47199 * 299.99699 * 3 2 1 28 28 H 1.09000 * 109.46885 * 59.99830 * 4 3 2 29 29 H 1.08993 * 109.46648 * 299.99887 * 4 3 2 30 30 H 1.08003 * 120.00342 * 0.02562 * 6 5 4 31 31 H 1.08001 * 120.00392 * 179.78930 * 7 6 5 32 32 H 1.07996 * 119.99860 * 179.97438 * 8 7 6 33 33 H 1.00905 * 110.99658 * 176.04476 * 12 10 9 34 34 H 1.00901 * 110.99832 * 299.99823 * 12 10 9 35 35 H 1.08998 * 109.47794 * 305.00574 * 13 10 9 36 36 H 1.09009 * 109.47099 * 65.00561 * 13 10 9 37 37 H 0.96998 * 119.99755 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.00200 * 0.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1484 2.5613 0.0013 6 6 4.4264 3.1948 -1.1958 7 6 4.9931 4.4554 -1.1952 8 6 5.2782 5.0847 0.0024 9 6 4.9969 4.4529 1.1991 10 6 5.3081 5.1386 2.5044 11 1 4.7202 4.6849 3.3024 12 7 4.9737 6.5652 2.4002 13 6 6.7977 4.9855 2.8184 14 6 7.0861 5.5632 4.1801 15 1 6.2867 5.9957 4.7634 16 6 8.3703 5.5394 4.6813 17 7 9.3438 5.0130 3.9707 18 14 8.7278 6.2560 6.3689 19 1 7.9299 5.5341 7.3923 20 1 10.1735 6.1074 6.6737 21 1 8.3640 7.6957 6.3825 22 6 4.4289 3.1924 1.1985 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8464 -0.8901 28 1 3.8575 0.6436 -0.8891 29 1 3.8567 0.6440 0.8908 30 1 4.2040 2.7032 -2.1314 31 1 5.2135 4.9489 -2.1303 32 1 5.7214 6.0695 0.0028 33 1 5.1127 7.0346 3.2825 34 1 5.5062 7.0087 1.6668 35 1 7.0646 3.9288 2.8081 36 1 7.3837 5.5156 2.0674 37 1 10.2472 4.9960 4.3234 38 1 4.2092 2.6987 2.1336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260087746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:58 Heat of formation + Delta-G solvation = -44.488509 kcal Electronic energy + Delta-G solvation = -17535.831564 eV Core-core repulsion = 14763.192389 eV Total energy + Delta-G solvation = -2772.639176 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.35012 -37.92463 -35.63768 -33.10035 -32.33324 -30.21441 -28.70714 -27.95181 -26.33575 -24.53276 -23.34355 -22.03607 -21.24012 -19.05547 -16.92829 -16.50691 -16.16654 -16.02390 -15.20136 -15.12458 -14.64655 -14.53728 -13.86525 -13.47865 -13.07217 -12.81745 -12.63652 -12.42896 -12.22582 -11.88830 -11.66554 -11.41331 -11.26909 -11.03900 -10.90601 -10.71398 -10.49827 -10.20586 -9.91082 -9.78774 -9.19232 -8.51931 -8.40506 -8.27997 -7.66327 -6.08899 -4.13855 1.71416 1.81264 3.27386 3.32669 3.34426 3.63003 4.18890 4.38335 4.91751 5.03407 5.08259 5.14990 5.24396 5.27993 5.30568 5.32348 5.43859 5.46421 5.48545 5.71061 5.76508 5.90374 5.97012 6.04178 6.20190 6.40741 6.53662 6.72764 6.84528 6.89278 7.01583 7.13599 7.38856 7.46993 7.57915 7.84797 8.04328 8.20305 8.32245 8.92738 9.51312 11.01686 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.004303 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.468511 B = 6504.904467 C = 6919.726128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.067 3.933 4 C -0.074 4.074 5 C -0.088 4.088 6 C -0.132 4.132 7 C -0.120 4.120 8 C -0.108 4.108 9 C -0.044 4.044 10 C 0.123 3.877 11 H 0.075 0.925 12 N -0.840 5.840 13 C 0.002 3.998 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.112 4.112 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.346 0.654 34 H 0.328 0.672 35 H 0.020 0.980 36 H 0.017 0.983 37 H 0.262 0.738 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 -5.037 -9.430 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.314 6.314 3 C -0.010 4.010 4 C -0.112 4.112 5 C -0.089 4.089 6 C -0.150 4.150 7 C -0.138 4.138 8 C -0.126 4.126 9 C -0.044 4.044 10 C 0.012 3.988 11 H 0.093 0.907 12 N -0.368 5.368 13 C -0.037 4.037 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.131 4.131 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.140 0.860 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.714 -5.490 -9.588 17.611 hybrid contribution 1.248 0.760 1.166 1.870 sum -12.466 -4.730 -8.421 15.770 Atomic orbital electron populations 1.22720 0.81183 1.02534 1.00002 1.87851 1.19595 1.28483 1.95469 1.22561 0.93674 0.84148 1.00576 1.20404 0.92637 0.94193 1.03919 1.19518 1.00548 0.95356 0.93442 1.20850 1.01544 0.95659 0.96942 1.21035 0.99719 0.95308 0.97767 1.20935 0.99920 0.99887 0.91896 1.20149 0.94575 0.93903 0.95780 1.20563 0.98297 0.88225 0.91720 0.90658 1.59276 1.63023 1.03152 1.11392 1.19783 0.89176 0.97988 0.96719 1.21123 0.93806 1.39598 1.02037 0.92562 1.25021 0.96367 0.95265 0.97537 1.69965 1.00787 1.44624 1.37548 0.86636 0.77216 0.79631 0.84400 1.20174 1.21281 1.20179 1.20902 0.99833 0.95067 0.97279 0.89773 0.94035 0.94201 0.92947 0.93221 0.90485 0.90208 0.86810 0.86607 0.86393 0.84068 0.85990 0.96202 0.96454 0.92818 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.78 10.70 -35.23 -0.38 -5.15 16 3 C 0.07 0.78 5.92 37.16 0.22 1.00 16 4 C -0.07 -0.93 5.71 -27.89 -0.16 -1.09 16 5 C -0.09 -1.30 5.13 -104.63 -0.54 -1.84 16 6 C -0.13 -1.85 9.70 -39.58 -0.38 -2.23 16 7 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 8 C -0.11 -1.83 9.29 -39.58 -0.37 -2.20 16 9 C -0.04 -0.81 4.96 -104.62 -0.52 -1.32 16 10 C 0.12 2.53 2.99 -68.86 -0.21 2.32 16 11 H 0.08 1.58 8.00 -51.93 -0.42 1.16 16 12 N -0.84 -15.75 9.02 -5.65 -0.05 -15.80 16 13 C 0.00 0.04 4.60 -27.88 -0.13 -0.08 16 14 C -0.53 -14.27 8.55 -34.44 -0.29 -14.57 16 15 H 0.06 1.46 7.15 -52.49 -0.38 1.09 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.11 -1.90 9.32 -39.58 -0.37 -2.26 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 29 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 30 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.93 6.66 -52.49 -0.35 1.58 16 33 H 0.35 6.60 7.90 -39.29 -0.31 6.29 16 34 H 0.33 5.88 7.35 -39.29 -0.29 5.59 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.12 1.92 8.04 -52.49 -0.42 1.49 16 LS Contribution 319.26 15.07 4.81 4.81 Total: -1.00 -29.98 319.26 -7.97 -37.95 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.94 Total: 9.12 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -2.13 Total: -21.46 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.69 Total: -41.45 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.38 Total: -5.15 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.98 -7.97 -37.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.535 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds