Wall clock time and date at job start Mon Mar 30 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 C 1.53002 * 109.47327 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47333 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.00034 * 270.19324 * 5 4 3 7 7 C 1.38211 * 120.00175 * 180.23734 * 6 5 4 8 8 C 1.38260 * 120.00008 * 359.79887 * 7 6 5 9 9 C 1.38215 * 119.99680 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99534 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.46813 * 159.97826 * 10 9 8 12 12 N 1.46898 * 109.47445 * 39.97335 * 10 9 8 13 13 C 1.53001 * 109.46902 * 279.97011 * 10 9 8 14 14 C 1.50700 * 109.47241 * 185.00337 * 13 10 9 15 15 H 1.07997 * 119.99803 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00388 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99575 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00362 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46713 * 60.00046 * 18 16 14 20 20 H 1.48495 * 109.47226 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47058 * 300.00217 * 18 16 14 22 22 C 1.38211 * 120.00162 * 89.99512 * 5 4 3 23 23 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47321 * 300.00250 * 1 2 3 25 25 H 1.09003 * 109.46697 * 60.00137 * 1 2 3 26 26 H 1.09004 * 109.47189 * 59.99475 * 3 2 1 27 27 H 1.09006 * 109.47199 * 299.99699 * 3 2 1 28 28 H 1.09000 * 109.46885 * 59.99830 * 4 3 2 29 29 H 1.08993 * 109.46648 * 299.99887 * 4 3 2 30 30 H 1.08003 * 120.00342 * 0.02562 * 6 5 4 31 31 H 1.08001 * 120.00392 * 179.78930 * 7 6 5 32 32 H 1.07996 * 119.99860 * 179.97438 * 8 7 6 33 33 H 1.00905 * 110.99658 * 176.04476 * 12 10 9 34 34 H 1.00901 * 110.99832 * 299.99823 * 12 10 9 35 35 H 1.08998 * 109.47794 * 305.00574 * 13 10 9 36 36 H 1.09009 * 109.47099 * 65.00561 * 13 10 9 37 37 H 0.96998 * 119.99755 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.00200 * 0.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1484 2.5613 0.0013 6 6 4.4264 3.1948 -1.1958 7 6 4.9931 4.4554 -1.1952 8 6 5.2782 5.0847 0.0024 9 6 4.9969 4.4529 1.1991 10 6 5.3081 5.1386 2.5044 11 1 4.7202 4.6849 3.3024 12 7 4.9737 6.5652 2.4002 13 6 6.7977 4.9855 2.8184 14 6 7.0861 5.5632 4.1801 15 1 6.2867 5.9957 4.7634 16 6 8.3703 5.5394 4.6813 17 7 9.3438 5.0130 3.9707 18 14 8.7278 6.2560 6.3689 19 1 7.9299 5.5341 7.3923 20 1 10.1735 6.1074 6.6737 21 1 8.3640 7.6957 6.3825 22 6 4.4289 3.1924 1.1985 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8464 -0.8901 28 1 3.8575 0.6436 -0.8891 29 1 3.8567 0.6440 0.8908 30 1 4.2040 2.7032 -2.1314 31 1 5.2135 4.9489 -2.1303 32 1 5.7214 6.0695 0.0028 33 1 5.1127 7.0346 3.2825 34 1 5.5062 7.0087 1.6668 35 1 7.0646 3.9288 2.8081 36 1 7.3837 5.5156 2.0674 37 1 10.2472 4.9960 4.3234 38 1 4.2092 2.6987 2.1336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260087746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:58 Heat of formation + Delta-G solvation = -63.365066 kcal Electronic energy + Delta-G solvation = -17536.650113 eV Core-core repulsion = 14763.192389 eV Total energy + Delta-G solvation = -2773.457725 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59684 -38.83234 -37.21387 -34.73081 -33.87893 -31.53084 -29.94679 -29.72163 -27.12479 -26.32828 -24.40993 -23.59685 -22.57313 -20.47634 -18.77622 -17.65471 -17.26621 -17.11015 -16.62622 -16.53027 -15.98940 -15.82227 -15.11240 -14.93829 -14.54348 -14.21132 -13.92774 -13.84333 -13.71767 -13.47678 -12.86669 -12.81442 -12.59423 -12.42524 -12.24888 -12.15353 -11.97445 -11.78769 -11.70253 -11.16429 -10.62942 -10.61948 -9.74891 -9.57521 -9.25053 -8.23484 -6.36398 0.48848 0.55671 1.38808 1.41086 1.48973 2.37410 2.72813 3.01685 3.09345 3.77020 4.00232 4.01179 4.17511 4.18444 4.23674 4.32875 4.48668 4.53341 4.55282 4.58538 4.64882 4.70840 4.85881 4.86252 4.94538 5.00021 5.21429 5.24561 5.33820 5.46525 5.62822 5.69856 5.73728 5.85373 6.12620 6.18663 6.21589 6.37646 6.69885 6.79933 7.33777 8.87479 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.004303 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.468511 B = 6504.904467 C = 6919.726128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.071 3.929 4 C -0.071 4.071 5 C -0.085 4.085 6 C -0.125 4.125 7 C -0.118 4.118 8 C -0.125 4.125 9 C -0.072 4.072 10 C 0.137 3.863 11 H 0.066 0.934 12 N -0.827 5.827 13 C 0.014 3.986 14 C -0.540 4.540 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.269 1.269 20 H -0.287 1.287 21 H -0.263 1.263 22 C -0.129 4.129 23 H 0.099 0.901 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.344 0.656 34 H 0.334 0.666 35 H -0.016 1.016 36 H -0.008 1.008 37 H 0.263 0.737 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 -5.014 -10.246 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.005 4.005 4 C -0.108 4.108 5 C -0.085 4.085 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.143 4.143 9 C -0.073 4.073 10 C 0.026 3.974 11 H 0.084 0.916 12 N -0.356 5.356 13 C -0.025 4.025 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.147 4.147 23 H 0.117 0.883 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.135 0.865 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.002 0.998 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.046 -5.457 -10.408 19.092 hybrid contribution 1.605 0.694 1.338 2.202 sum -13.441 -4.764 -9.070 16.900 Atomic orbital electron populations 1.22934 0.79483 1.03881 1.00806 1.87813 1.21507 1.28558 1.95613 1.22474 0.92917 0.84272 1.00875 1.20384 0.93375 0.92808 1.04262 1.19740 0.99727 0.96100 0.92919 1.21272 0.99840 0.95260 0.97936 1.21385 0.98593 0.95565 0.97984 1.21067 1.00589 1.00239 0.92411 1.20043 0.97079 0.94935 0.95215 1.20255 0.94689 0.89388 0.93106 0.91555 1.59267 1.62628 1.02255 1.11426 1.19637 0.92298 0.95016 0.95552 1.21542 0.94201 1.39190 1.02840 0.91624 1.25970 0.96237 0.95627 1.01739 1.70111 1.01225 1.46174 1.39654 0.85493 0.76919 0.79333 0.79253 1.19360 1.21212 1.18817 1.21004 1.00556 0.94812 0.98374 0.88263 0.93648 0.92965 0.93536 0.92033 0.89080 0.90953 0.83412 0.83556 0.86499 0.84293 0.85343 0.99787 0.98959 0.92809 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.32 10.70 -148.98 -1.59 -10.91 16 3 C 0.07 1.53 5.92 71.98 0.43 1.96 16 4 C -0.07 -1.66 5.71 29.85 0.17 -1.49 16 5 C -0.08 -2.37 5.13 -19.87 -0.10 -2.47 16 6 C -0.13 -3.16 9.70 22.27 0.22 -2.94 16 7 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16 8 C -0.12 -4.19 9.29 22.27 0.21 -3.99 16 9 C -0.07 -2.72 4.96 -19.86 -0.10 -2.82 16 10 C 0.14 5.81 2.99 44.17 0.13 5.95 16 11 H 0.07 2.88 8.00 -2.38 -0.02 2.86 16 12 N -0.83 -31.31 9.02 -171.80 -1.55 -32.86 16 13 C 0.01 0.71 4.60 29.85 0.14 0.85 16 14 C -0.54 -29.79 8.55 25.60 0.22 -29.57 16 15 H 0.07 3.42 7.15 -2.91 -0.02 3.40 16 16 C 0.00 0.14 5.46 84.65 0.46 0.61 16 17 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 18 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 22 C -0.13 -4.40 9.32 22.27 0.21 -4.19 16 23 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.06 1.17 8.14 -2.38 -0.02 1.16 16 28 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 29 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 30 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.12 3.83 6.66 -2.91 -0.02 3.81 16 33 H 0.34 13.15 7.90 -89.69 -0.71 12.44 16 34 H 0.33 12.08 7.35 -89.69 -0.66 11.42 16 35 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 36 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.12 3.87 8.04 -2.91 -0.02 3.84 16 Total: -1.00 -65.23 319.26 2.29 -62.94 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.32 Total: 30.88 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 3.45 Total: -39.45 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -1.26 Total: -89.17 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.59 Total: -10.91 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -65.23 2.29 -62.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.426 kcal (2) G-P(sol) polarization free energy of solvation -65.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds