Wall clock time and date at job start Mon Mar 30 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31780 * 119.08589 * 2 1 4 4 C 1.32552 * 121.01223 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.39925 * 179.97438 * 4 3 2 6 6 C 1.38111 * 119.19968 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.83753 * 180.02562 * 6 4 3 8 8 C 1.39630 * 118.33147 * 359.97438 * 6 4 3 9 9 N 1.38544 * 120.52713 * 180.02562 * 8 6 4 10 10 C 1.46899 * 110.99673 * 115.20235 * 9 8 6 11 11 C 1.46902 * 110.99898 * 239.14932 * 9 8 6 12 12 C 1.53003 * 109.46758 * 170.00425 * 11 9 8 13 13 C 1.50706 * 109.46601 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00033 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99504 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00309 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99760 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47101 * 90.00135 * 17 15 13 19 19 H 1.48501 * 109.46942 * 210.00387 * 17 15 13 20 20 H 1.48503 * 109.46641 * 330.00045 * 17 15 13 21 21 N 1.31756 * 119.08268 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.47217 * 269.97990 * 1 2 3 23 23 H 1.09005 * 109.46844 * 29.98003 * 1 2 3 24 24 H 1.08996 * 109.46850 * 149.98000 * 1 2 3 25 25 H 1.09000 * 109.46986 * 90.00097 * 5 4 3 26 26 H 1.09002 * 109.46332 * 210.00138 * 5 4 3 27 27 H 1.08999 * 109.46949 * 329.99889 * 5 4 3 28 28 H 1.09000 * 109.47210 * 89.99148 * 7 6 4 29 29 H 1.08994 * 109.47219 * 210.00039 * 7 6 4 30 30 H 1.09001 * 109.46641 * 329.99430 * 7 6 4 31 31 H 1.09000 * 109.47111 * 66.05910 * 10 9 8 32 32 H 1.09004 * 109.47029 * 186.06154 * 10 9 8 33 33 H 1.09000 * 109.47220 * 306.06147 * 10 9 8 34 34 H 1.08998 * 109.47349 * 290.00827 * 11 9 8 35 35 H 1.08999 * 109.46608 * 50.00970 * 11 9 8 36 36 H 1.09005 * 109.46923 * 300.00050 * 12 11 9 37 37 H 1.08993 * 109.47330 * 60.00515 * 12 11 9 38 38 H 0.96995 * 120.00278 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1516 0.0000 4 6 3.4724 1.1962 -0.0005 5 6 4.1909 2.5209 -0.0011 6 6 4.1863 0.0139 -0.0016 7 6 5.6933 0.0215 -0.0016 8 6 3.4767 -1.1887 -0.0015 9 7 4.1469 -2.4012 -0.0021 10 6 3.8910 -3.1446 1.2388 11 6 3.7856 -3.2019 -1.1795 12 6 4.7185 -4.4104 -1.2801 13 6 4.3482 -5.2315 -2.4884 14 1 3.5297 -4.9220 -3.1214 15 6 5.0551 -6.3772 -2.7863 16 7 6.0522 -6.7537 -2.0158 17 14 4.5966 -7.3946 -4.2844 18 1 5.3622 -6.9138 -5.4625 19 1 4.9211 -8.8215 -4.0318 20 1 3.1419 -7.2572 -4.5496 21 7 2.1474 -1.1514 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 4.3645 2.8405 1.0265 26 1 5.1462 2.4158 -0.5153 27 1 3.5816 3.2645 -0.5149 28 1 6.0567 0.0225 1.0260 29 1 6.0611 -0.8661 -0.5162 30 1 6.0521 0.9137 -0.5148 31 1 2.8397 -3.4296 1.2813 32 1 4.5115 -4.0406 1.2602 33 1 4.1317 -2.5154 2.0956 34 1 2.7555 -3.5450 -1.0834 35 1 3.8831 -2.5919 -2.0775 36 1 5.7487 -4.0672 -1.3763 37 1 4.6211 -5.0205 -0.3822 38 1 6.5493 -7.5599 -2.2251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260267657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:09 Heat of formation + Delta-G solvation = 41.349690 kcal Electronic energy + Delta-G solvation = -18178.811745 eV Core-core repulsion = 15442.187544 eV Total energy + Delta-G solvation = -2736.624201 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15064 -37.46234 -34.93465 -33.47317 -32.28487 -30.07639 -29.52968 -28.94433 -26.39416 -25.40998 -24.23168 -21.67971 -21.38698 -20.05495 -17.83020 -16.77177 -15.77794 -15.51555 -14.54655 -14.46660 -14.20376 -13.97227 -13.80776 -13.63099 -13.02577 -12.84299 -12.65168 -12.36323 -12.33652 -12.19363 -11.96461 -11.75592 -11.41350 -11.19390 -10.91895 -10.73057 -10.61737 -10.16964 -9.92633 -9.56447 -9.19779 -9.04111 -8.76326 -8.37139 -8.18867 -6.02145 -4.04524 1.06671 1.18401 3.31551 3.37661 3.41319 3.78547 3.88519 4.02670 4.32203 4.46526 4.95501 4.97707 5.17361 5.32265 5.34136 5.39756 5.48854 5.54579 5.57073 5.72753 5.74629 5.85653 5.88055 5.91531 6.08264 6.17492 6.33595 6.37575 6.46325 6.60618 6.85173 7.16369 7.21864 7.53021 7.74451 7.81592 8.01078 8.29536 8.39171 9.01647 9.59276 11.09221 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.028224 B = 0.005077 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.817153 B = 5513.976417 C = 5887.225646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.318 3.682 3 N -0.530 5.530 4 C 0.168 3.832 5 C -0.104 4.104 6 C -0.171 4.171 7 C -0.098 4.098 8 C 0.358 3.642 9 N -0.492 5.492 10 C 0.035 3.965 11 C 0.070 3.930 12 C 0.030 3.970 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.546 5.546 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.021 0.979 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 15.739 6.171 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 N -0.246 5.246 4 C 0.022 3.978 5 C -0.161 4.161 6 C -0.177 4.177 7 C -0.155 4.155 8 C 0.121 3.879 9 N -0.215 5.215 10 C -0.112 4.112 11 C -0.055 4.055 12 C -0.008 4.008 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.265 5.265 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.843 15.668 6.167 17.521 hybrid contribution -0.166 -0.916 -0.782 1.216 sum -5.009 14.752 5.384 16.483 Atomic orbital electron populations 1.20510 0.86187 1.03854 1.03424 1.22956 0.97740 0.83125 0.91331 1.68037 1.09460 1.30490 1.16627 1.21463 0.89319 0.95467 0.91524 1.20772 0.99914 0.92060 1.03359 1.21251 0.99334 0.92578 1.04543 1.20597 0.88829 1.03603 1.02499 1.20383 0.86350 0.92767 0.88428 1.60339 1.53004 1.02550 1.05650 1.22348 1.00779 0.98670 0.89390 1.22433 0.99438 0.95370 0.88239 1.19117 0.94583 0.89994 0.97095 1.21139 1.16214 1.08264 1.10444 0.92776 1.24967 0.94979 0.97481 0.96714 1.69961 1.20639 1.24552 1.38045 0.86586 0.78837 0.79436 0.83108 1.20621 1.21166 1.19890 1.68466 1.10877 1.31148 1.15984 0.90084 0.89968 0.89801 0.89980 0.89832 0.90282 0.91168 0.89361 0.91674 0.94434 0.89241 0.92707 0.94306 0.92414 0.95609 0.96119 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.32 36.01 0.37 -0.58 16 2 C 0.32 5.02 7.64 -157.24 -1.20 3.82 16 3 N -0.53 -8.12 10.27 -7.07 -0.07 -8.19 16 4 C 0.17 2.35 6.82 -82.32 -0.56 1.79 16 5 C -0.10 -0.99 9.83 36.01 0.35 -0.64 16 6 C -0.17 -2.63 5.93 -104.15 -0.62 -3.25 16 7 C -0.10 -1.25 9.45 36.01 0.34 -0.91 16 8 C 0.36 6.43 5.26 -154.78 -0.81 5.62 16 9 N -0.49 -9.41 3.83 -180.87 -0.69 -10.10 16 10 C 0.04 0.61 9.12 60.06 0.55 1.16 16 11 C 0.07 1.56 4.64 -3.82 -0.02 1.54 16 12 C 0.03 0.77 4.90 -27.88 -0.14 0.63 16 13 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 N -0.55 -9.85 9.88 -9.97 -0.10 -9.94 16 22 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.67 6.07 -51.93 -0.32 0.36 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.32 7.56 -51.93 -0.39 0.92 16 30 H 0.06 0.66 6.07 -51.93 -0.32 0.35 16 31 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.09 1.63 6.57 -51.93 -0.34 1.29 16 33 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.55 6.60 -51.93 -0.34 0.21 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 314.82 15.07 4.74 4.74 Total: -1.00 -31.68 314.82 -8.44 -40.12 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.89 Total: -3.10 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.15 Total: -4.32 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.13 Total: -54.10 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.68 -8.44 -40.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260267657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.469 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds