Wall clock time and date at job start Mon Mar 30 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31780 * 119.08589 * 2 1 4 4 C 1.32552 * 121.01223 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.39925 * 179.97438 * 4 3 2 6 6 C 1.38111 * 119.19968 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.83753 * 180.02562 * 6 4 3 8 8 C 1.39630 * 118.33147 * 359.97438 * 6 4 3 9 9 N 1.38544 * 120.52713 * 180.02562 * 8 6 4 10 10 C 1.46899 * 110.99673 * 115.20235 * 9 8 6 11 11 C 1.46902 * 110.99898 * 239.14932 * 9 8 6 12 12 C 1.53003 * 109.46758 * 170.00425 * 11 9 8 13 13 C 1.50706 * 109.46601 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00033 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99504 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00309 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99760 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47101 * 90.00135 * 17 15 13 19 19 H 1.48501 * 109.46942 * 210.00387 * 17 15 13 20 20 H 1.48503 * 109.46641 * 330.00045 * 17 15 13 21 21 N 1.31756 * 119.08268 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.47217 * 269.97990 * 1 2 3 23 23 H 1.09005 * 109.46844 * 29.98003 * 1 2 3 24 24 H 1.08996 * 109.46850 * 149.98000 * 1 2 3 25 25 H 1.09000 * 109.46986 * 90.00097 * 5 4 3 26 26 H 1.09002 * 109.46332 * 210.00138 * 5 4 3 27 27 H 1.08999 * 109.46949 * 329.99889 * 5 4 3 28 28 H 1.09000 * 109.47210 * 89.99148 * 7 6 4 29 29 H 1.08994 * 109.47219 * 210.00039 * 7 6 4 30 30 H 1.09001 * 109.46641 * 329.99430 * 7 6 4 31 31 H 1.09000 * 109.47111 * 66.05910 * 10 9 8 32 32 H 1.09004 * 109.47029 * 186.06154 * 10 9 8 33 33 H 1.09000 * 109.47220 * 306.06147 * 10 9 8 34 34 H 1.08998 * 109.47349 * 290.00827 * 11 9 8 35 35 H 1.08999 * 109.46608 * 50.00970 * 11 9 8 36 36 H 1.09005 * 109.46923 * 300.00050 * 12 11 9 37 37 H 1.08993 * 109.47330 * 60.00515 * 12 11 9 38 38 H 0.96995 * 120.00278 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1516 0.0000 4 6 3.4724 1.1962 -0.0005 5 6 4.1909 2.5209 -0.0011 6 6 4.1863 0.0139 -0.0016 7 6 5.6933 0.0215 -0.0016 8 6 3.4767 -1.1887 -0.0015 9 7 4.1469 -2.4012 -0.0021 10 6 3.8910 -3.1446 1.2388 11 6 3.7856 -3.2019 -1.1795 12 6 4.7185 -4.4104 -1.2801 13 6 4.3482 -5.2315 -2.4884 14 1 3.5297 -4.9220 -3.1214 15 6 5.0551 -6.3772 -2.7863 16 7 6.0522 -6.7537 -2.0158 17 14 4.5966 -7.3946 -4.2844 18 1 5.3622 -6.9138 -5.4625 19 1 4.9211 -8.8215 -4.0318 20 1 3.1419 -7.2572 -4.5496 21 7 2.1474 -1.1514 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 4.3645 2.8405 1.0265 26 1 5.1462 2.4158 -0.5153 27 1 3.5816 3.2645 -0.5149 28 1 6.0567 0.0225 1.0260 29 1 6.0611 -0.8661 -0.5162 30 1 6.0521 0.9137 -0.5148 31 1 2.8397 -3.4296 1.2813 32 1 4.5115 -4.0406 1.2602 33 1 4.1317 -2.5154 2.0956 34 1 2.7555 -3.5450 -1.0834 35 1 3.8831 -2.5919 -2.0775 36 1 5.7487 -4.0672 -1.3763 37 1 4.6211 -5.0205 -0.3822 38 1 6.5493 -7.5599 -2.2251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260267657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:09 Heat of formation + Delta-G solvation = 22.266658 kcal Electronic energy + Delta-G solvation = -18179.639247 eV Core-core repulsion = 15442.187544 eV Total energy + Delta-G solvation = -2737.451703 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.36161 -38.94581 -36.01363 -35.42550 -33.83715 -31.49716 -31.03038 -29.87452 -27.89589 -26.88750 -25.79206 -23.23128 -22.53417 -21.72379 -19.10563 -18.70413 -17.35287 -16.81838 -16.47043 -15.84671 -15.68346 -15.32876 -15.07436 -14.52386 -14.26524 -14.22411 -13.98441 -13.64727 -13.51162 -13.30794 -13.23590 -13.00684 -12.92655 -12.77646 -12.68755 -12.49371 -11.98489 -11.84449 -11.62926 -11.40047 -11.18412 -10.56626 -10.31358 -9.92585 -9.75215 -8.22149 -6.33335 -0.14770 -0.00144 1.39584 1.40713 1.51867 2.36334 2.56592 2.60975 2.99524 3.11437 3.16339 3.76002 3.92207 4.02438 4.24338 4.30753 4.34744 4.51974 4.57674 4.64902 4.65889 4.69996 4.77464 4.83271 4.84275 4.89860 4.92751 5.07068 5.14419 5.31060 5.37774 5.49343 5.55326 5.69354 5.87340 6.01041 6.18965 6.22581 6.80773 7.10084 7.35395 8.89748 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.028224 B = 0.005077 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.817153 B = 5513.976417 C = 5887.225646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.304 3.696 3 N -0.534 5.534 4 C 0.169 3.831 5 C -0.101 4.101 6 C -0.177 4.177 7 C -0.093 4.093 8 C 0.326 3.674 9 N -0.491 5.491 10 C 0.040 3.960 11 C 0.095 3.905 12 C 0.041 3.959 13 C -0.547 4.547 14 H 0.053 0.947 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.964 3.036 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.267 1.267 21 N -0.574 5.574 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.048 0.952 36 H 0.002 0.998 37 H 0.004 0.996 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 17.432 5.880 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.035 3.965 3 N -0.250 5.250 4 C 0.023 3.977 5 C -0.157 4.157 6 C -0.183 4.183 7 C -0.151 4.151 8 C 0.090 3.910 9 N -0.214 5.214 10 C -0.106 4.106 11 C -0.032 4.032 12 C 0.004 3.996 13 C -0.586 4.586 14 H 0.072 0.928 15 C -0.190 4.190 16 N -0.566 5.566 17 Si 0.788 3.212 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.192 1.192 21 N -0.293 5.293 22 H 0.116 0.884 23 H 0.117 0.883 24 H 0.099 0.901 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.138 17.372 5.886 19.048 hybrid contribution -0.077 -1.343 -0.633 1.487 sum -5.214 16.029 5.253 17.655 Atomic orbital electron populations 1.20614 0.83755 1.04536 1.04678 1.23662 0.99330 0.82745 0.90746 1.68182 1.10160 1.30023 1.16684 1.22216 0.89097 0.96886 0.89457 1.20936 1.00256 0.89514 1.05036 1.21544 1.00614 0.92041 1.04055 1.20628 0.87122 1.03792 1.03510 1.20495 0.86943 0.92714 0.90833 1.60211 1.53501 1.02853 1.04851 1.22299 0.99968 0.98592 0.89770 1.21932 0.97469 0.94190 0.89597 1.18898 0.93965 0.91018 0.95731 1.21513 1.16523 1.09193 1.11358 0.92847 1.25868 0.94694 0.98603 0.99865 1.70079 1.21546 1.25167 1.39816 0.85468 0.78836 0.77721 0.79143 1.19638 1.20362 1.19161 1.68411 1.11120 1.32562 1.17238 0.88432 0.88259 0.90057 0.87878 0.87961 0.89439 0.89641 0.92040 0.88582 0.95169 0.90577 0.90335 0.95580 0.93303 0.97996 0.97802 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.32 71.24 0.73 -0.98 16 2 C 0.30 9.34 7.64 138.77 1.06 10.40 16 3 N -0.53 -15.41 10.27 -176.28 -1.81 -17.22 16 4 C 0.17 4.38 6.82 42.42 0.29 4.67 16 5 C -0.10 -1.55 9.83 71.24 0.70 -0.85 16 6 C -0.18 -5.22 5.93 -19.56 -0.12 -5.34 16 7 C -0.09 -2.22 9.45 71.24 0.67 -1.55 16 8 C 0.33 11.76 5.26 133.17 0.70 12.46 16 9 N -0.49 -19.31 3.83 -726.15 -2.78 -22.09 16 10 C 0.04 1.46 9.12 127.69 1.16 2.62 16 11 C 0.09 4.35 4.64 86.30 0.40 4.75 16 12 C 0.04 2.24 4.90 29.85 0.15 2.38 16 13 C -0.55 -31.84 9.11 25.60 0.23 -31.60 16 14 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 15 C 0.01 0.48 5.46 84.66 0.46 0.94 16 16 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 17 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 N -0.57 -20.77 9.88 -185.44 -1.83 -22.61 16 22 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 25 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.21 6.07 -2.39 -0.01 1.20 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.82 7.56 -2.39 -0.02 1.80 16 30 H 0.10 1.65 6.07 -2.39 -0.01 1.64 16 31 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 32 H 0.08 2.91 6.57 -2.39 -0.02 2.89 16 33 H 0.08 2.42 8.10 -2.39 -0.02 2.40 16 34 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 35 H 0.05 2.30 8.05 -2.39 -0.02 2.28 16 36 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 37 H 0.00 0.21 6.60 -2.39 -0.02 0.19 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -69.29 314.82 3.38 -65.91 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.04 Total: 7.26 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.45 Total: -2.08 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -6.14 Total: -117.70 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.29 3.38 -65.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260267657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.176 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds