Wall clock time and date at job start Mon Mar 30 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.35314 * 125.87042 * 124.71364 * 10 9 7 12 12 C 1.35353 * 106.17550 * 179.89976 * 11 10 9 13 13 C 1.50703 * 126.75078 * 180.12440 * 12 11 10 14 14 C 1.54241 * 108.89400 * 38.13002 * 13 12 11 15 15 C 1.50473 * 108.52324 * 159.26118 * 14 13 12 16 16 C 1.54078 * 112.49803 * 94.15316 * 15 14 13 17 17 C 1.54065 * 112.81352 * 318.28388 * 16 15 14 18 18 C 1.50469 * 112.50028 * 318.28433 * 17 16 15 19 19 C 1.45543 * 108.89540 * 275.25233 * 13 12 11 20 20 N 1.33765 * 106.49827 * 0.35501 * 12 11 10 21 21 N 1.28634 * 108.88552 * 359.77180 * 20 12 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.07997 * 126.90816 * 0.02562 * 11 10 9 26 26 H 1.08998 * 108.87026 * 156.64863 * 13 12 11 27 27 H 1.08995 * 109.63519 * 278.97387 * 14 13 12 28 28 H 1.08999 * 109.62814 * 39.55725 * 14 13 12 29 29 H 1.09004 * 108.88222 * 333.38230 * 15 14 13 30 30 H 1.09001 * 108.88271 * 214.93362 * 15 14 13 31 31 H 1.08997 * 108.81221 * 197.42277 * 16 15 14 32 32 H 1.08999 * 108.72455 * 79.08297 * 16 15 14 33 33 H 1.09002 * 108.87563 * 197.50031 * 17 16 15 34 34 H 1.09008 * 108.79584 * 79.00744 * 17 16 15 35 35 H 1.09002 * 109.62896 * 334.44339 * 18 17 16 36 36 H 1.08998 * 109.62968 * 213.86646 * 18 17 16 37 37 H 1.09001 * 108.89460 * 303.44173 * 19 13 12 38 38 H 1.08997 * 108.89918 * 61.93166 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2433 -4.6251 0.8866 12 6 3.2675 -5.4245 0.5069 13 6 3.7208 -6.6922 1.1840 14 6 2.4810 -7.4646 1.6794 15 6 2.8639 -8.9062 1.8784 16 6 3.2793 -9.2108 3.3305 17 6 4.1635 -8.1077 3.9428 18 6 5.1970 -7.5956 2.9765 19 6 4.6298 -6.3488 2.2675 20 7 3.8014 -4.8651 -0.5846 21 7 3.1480 -3.7932 -0.8652 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 1.5887 -4.7678 1.7336 26 1 4.2525 -7.3084 0.4590 27 1 2.1401 -7.0425 2.6247 28 1 1.6861 -7.3962 0.9367 29 1 3.6962 -9.1447 1.2162 30 1 2.0144 -9.5364 1.6150 31 1 3.8284 -10.1522 3.3488 32 1 2.3797 -9.3173 3.9367 33 1 4.6696 -8.5084 4.8211 34 1 3.5271 -7.2781 4.2509 35 1 5.4220 -8.3658 2.2387 36 1 6.1041 -7.3278 3.5184 37 1 5.4571 -5.7659 1.8628 38 1 4.0955 -5.7404 2.9971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:42 Heat of formation + Delta-G solvation = 61.533685 kcal Electronic energy + Delta-G solvation = -18160.524529 eV Core-core repulsion = 15424.775572 eV Total energy + Delta-G solvation = -2735.748957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.39958 -38.91899 -34.51540 -33.27354 -32.18421 -32.12323 -29.32595 -27.80330 -24.94637 -24.55283 -23.82305 -21.75079 -20.49880 -19.78677 -19.19021 -16.86505 -16.43405 -15.68952 -15.17610 -14.68573 -14.67197 -14.50747 -13.87294 -13.59195 -13.18251 -12.99622 -12.49410 -12.15452 -12.12617 -12.10295 -11.31567 -11.07034 -10.94151 -10.84005 -10.67723 -10.60168 -10.43648 -10.36003 -10.28846 -10.16470 -10.06598 -9.82600 -9.01299 -8.69234 -8.37384 -6.38287 -4.44600 2.55740 3.18922 3.24852 3.27844 3.30070 3.58332 4.23823 4.52842 4.69362 4.79753 4.98078 5.01631 5.12377 5.21754 5.28518 5.39616 5.49142 5.50688 5.70638 5.74224 5.83859 5.89740 6.02543 6.04791 6.12167 6.13503 6.19133 6.22947 6.32768 6.40108 6.53892 6.59731 6.78366 6.84011 7.07822 7.53986 7.65722 7.71173 8.61170 9.22518 9.45213 10.71399 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.038759 B = 0.004478 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.248144 B = 6250.808219 C = 6326.375948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.241 3.759 10 N -0.250 5.250 11 C -0.061 4.061 12 C -0.039 4.039 13 C 0.013 3.987 14 C -0.110 4.110 15 C -0.118 4.118 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.110 4.110 20 N -0.301 5.301 21 N -0.077 5.077 22 H 0.270 0.730 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.175 0.825 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -15.341 7.809 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.090 0.910 9 C 0.123 3.877 10 N -0.043 5.043 11 C -0.214 4.214 12 C -0.179 4.179 13 C -0.008 4.008 14 C -0.148 4.148 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.148 4.148 20 N -0.166 5.166 21 N -0.057 5.057 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.192 0.808 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.483 -14.600 6.511 16.603 hybrid contribution -0.422 0.731 1.000 1.309 sum 4.061 -13.869 7.512 16.288 Atomic orbital electron populations 1.69913 1.06108 1.27997 1.48879 1.24928 0.95022 0.99695 0.94067 0.86253 0.79634 0.81639 0.78622 1.20062 1.20832 1.19563 1.21165 0.94030 0.88954 1.53430 0.91041 1.20096 0.86138 0.81086 1.00378 1.48076 1.21773 1.18331 1.16164 1.23215 1.04819 0.92725 1.00620 1.21845 0.97959 1.00425 0.97684 1.18282 0.95687 0.90815 0.95998 1.21407 0.97160 0.94737 1.01473 1.21330 1.01029 0.96644 0.96537 1.21914 0.99128 0.98200 0.96086 1.21365 0.97519 0.98706 0.98147 1.21311 0.97807 0.97620 0.98492 1.20524 0.99114 0.97518 0.97667 1.74975 1.23381 1.03857 1.14367 1.78239 0.99279 1.12683 1.15486 0.92060 0.92079 0.92474 0.80784 0.90349 0.91371 0.91569 0.91953 0.92403 0.92616 0.92520 0.92708 0.91892 0.91608 0.92074 0.91935 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.61 9.17 -34.44 -0.32 -14.92 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.24 5.91 6.21 -5.20 -0.03 5.88 16 10 N -0.25 -5.72 3.43 -62.45 -0.21 -5.93 16 11 C -0.06 -1.15 10.80 -17.04 -0.18 -1.33 16 12 C -0.04 -0.71 5.90 -82.78 -0.49 -1.20 16 13 C 0.01 0.17 2.14 -94.64 -0.20 -0.03 16 14 C -0.11 -1.25 4.44 -27.34 -0.12 -1.37 16 15 C -0.12 -1.12 5.31 -27.43 -0.15 -1.26 16 16 C -0.12 -0.98 5.85 -25.61 -0.15 -1.13 16 17 C -0.12 -1.08 5.32 -27.44 -0.15 -1.22 16 18 C -0.11 -1.14 5.61 -27.35 -0.15 -1.29 16 19 C -0.11 -1.39 4.43 -29.60 -0.13 -1.52 16 20 N -0.30 -6.68 12.41 33.29 0.41 -6.26 16 21 N -0.08 -1.88 12.92 60.35 0.78 -1.10 16 22 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 23 H 0.06 1.45 8.07 -51.93 -0.42 1.04 16 24 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.17 2.69 8.04 -52.49 -0.42 2.27 16 26 H 0.08 1.09 7.47 -51.93 -0.39 0.70 16 27 H 0.07 0.74 6.97 -51.93 -0.36 0.37 16 28 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 29 H 0.06 0.60 6.63 -51.93 -0.34 0.26 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.60 6.63 -51.92 -0.34 0.25 16 35 H 0.07 0.63 6.98 -51.93 -0.36 0.27 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.06 0.80 7.47 -51.93 -0.39 0.41 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -29.04 302.83 -6.85 -35.90 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.94 Total: -1.62 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.17 Total: -17.71 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 1.71 Total: -37.07 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.04 -6.85 -35.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.429 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds