Wall clock time and date at job start Mon Mar 30 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.35314 * 125.87042 * 124.71364 * 10 9 7 12 12 C 1.35353 * 106.17550 * 179.89976 * 11 10 9 13 13 C 1.50703 * 126.75078 * 180.12440 * 12 11 10 14 14 C 1.54241 * 108.89400 * 38.13002 * 13 12 11 15 15 C 1.50473 * 108.52324 * 159.26118 * 14 13 12 16 16 C 1.54078 * 112.49803 * 94.15316 * 15 14 13 17 17 C 1.54065 * 112.81352 * 318.28388 * 16 15 14 18 18 C 1.50469 * 112.50028 * 318.28433 * 17 16 15 19 19 C 1.45543 * 108.89540 * 275.25233 * 13 12 11 20 20 N 1.33765 * 106.49827 * 0.35501 * 12 11 10 21 21 N 1.28634 * 108.88552 * 359.77180 * 20 12 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.07997 * 126.90816 * 0.02562 * 11 10 9 26 26 H 1.08998 * 108.87026 * 156.64863 * 13 12 11 27 27 H 1.08995 * 109.63519 * 278.97387 * 14 13 12 28 28 H 1.08999 * 109.62814 * 39.55725 * 14 13 12 29 29 H 1.09004 * 108.88222 * 333.38230 * 15 14 13 30 30 H 1.09001 * 108.88271 * 214.93362 * 15 14 13 31 31 H 1.08997 * 108.81221 * 197.42277 * 16 15 14 32 32 H 1.08999 * 108.72455 * 79.08297 * 16 15 14 33 33 H 1.09002 * 108.87563 * 197.50031 * 17 16 15 34 34 H 1.09008 * 108.79584 * 79.00744 * 17 16 15 35 35 H 1.09002 * 109.62896 * 334.44339 * 18 17 16 36 36 H 1.08998 * 109.62968 * 213.86646 * 18 17 16 37 37 H 1.09001 * 108.89460 * 303.44173 * 19 13 12 38 38 H 1.08997 * 108.89918 * 61.93166 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2433 -4.6251 0.8866 12 6 3.2675 -5.4245 0.5069 13 6 3.7208 -6.6922 1.1840 14 6 2.4810 -7.4646 1.6794 15 6 2.8639 -8.9062 1.8784 16 6 3.2793 -9.2108 3.3305 17 6 4.1635 -8.1077 3.9428 18 6 5.1970 -7.5956 2.9765 19 6 4.6298 -6.3488 2.2675 20 7 3.8014 -4.8651 -0.5846 21 7 3.1480 -3.7932 -0.8652 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 1.5887 -4.7678 1.7336 26 1 4.2525 -7.3084 0.4590 27 1 2.1401 -7.0425 2.6247 28 1 1.6861 -7.3962 0.9367 29 1 3.6962 -9.1447 1.2162 30 1 2.0144 -9.5364 1.6150 31 1 3.8284 -10.1522 3.3488 32 1 2.3797 -9.3173 3.9367 33 1 4.6696 -8.5084 4.8211 34 1 3.5271 -7.2781 4.2509 35 1 5.4220 -8.3658 2.2387 36 1 6.1041 -7.3278 3.5184 37 1 5.4571 -5.7659 1.8628 38 1 4.0955 -5.7404 2.9971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260311658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:42 Heat of formation + Delta-G solvation = 45.481919 kcal Electronic energy + Delta-G solvation = -18161.220586 eV Core-core repulsion = 15424.775572 eV Total energy + Delta-G solvation = -2736.445014 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.06316 -39.86413 -36.28837 -34.66231 -33.88607 -32.96405 -30.76096 -29.69919 -25.96958 -25.77654 -25.40711 -23.12852 -22.11066 -20.99652 -19.96415 -18.85084 -18.10341 -16.94916 -16.71354 -16.34671 -15.91941 -15.41377 -15.00588 -14.91412 -14.40327 -14.38095 -13.88333 -13.79640 -13.18327 -12.95928 -12.93672 -12.82076 -12.59926 -12.40232 -12.01566 -11.85706 -11.62026 -11.59565 -11.39201 -11.24938 -11.11391 -10.98148 -10.89191 -10.66369 -9.94954 -8.43863 -6.57692 0.89839 1.36450 1.38307 1.48598 1.68611 1.85072 2.31702 2.91230 3.38269 3.71567 3.94030 4.05859 4.16741 4.24273 4.33715 4.37588 4.44046 4.51335 4.58275 4.58989 4.75625 4.77970 5.01889 5.04935 5.10493 5.16704 5.22356 5.35140 5.41882 5.42701 5.45241 5.46907 5.51071 5.54626 5.61319 5.68553 5.71567 5.86074 6.50464 7.13274 7.75636 8.65983 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.038759 B = 0.004478 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.248144 B = 6250.808219 C = 6326.375948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.559 4.559 8 H 0.052 0.948 9 C 0.253 3.747 10 N -0.263 5.263 11 C -0.055 4.055 12 C -0.031 4.031 13 C 0.018 3.982 14 C -0.103 4.103 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.107 4.107 19 C -0.108 4.108 20 N -0.320 5.320 21 N -0.126 5.126 22 H 0.276 0.724 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.211 0.789 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 -16.415 9.474 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.597 4.597 8 H 0.071 0.929 9 C 0.134 3.866 10 N -0.056 5.056 11 C -0.208 4.208 12 C -0.172 4.172 13 C -0.002 4.002 14 C -0.141 4.141 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.157 4.157 18 C -0.145 4.145 19 C -0.146 4.146 20 N -0.184 5.184 21 N -0.105 5.105 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.228 0.772 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.555 -15.686 8.166 18.262 hybrid contribution -0.428 0.981 0.497 1.180 sum 4.127 -14.705 8.663 17.559 Atomic orbital electron populations 1.69969 1.07119 1.29155 1.48922 1.25670 0.95847 1.02596 0.93337 0.85339 0.78384 0.78006 0.78701 1.19767 1.19268 1.19797 1.21287 0.93344 0.90657 1.54383 0.92950 1.19773 0.86071 0.81022 0.99722 1.47951 1.21663 1.18879 1.17154 1.23881 1.05106 0.91277 1.00550 1.22636 0.96904 1.01354 0.96283 1.18482 0.97059 0.88719 0.95982 1.21371 0.95493 0.95803 1.01480 1.21306 1.01433 0.95185 0.97475 1.21901 0.99523 0.98428 0.95197 1.21362 0.97283 0.98799 0.98298 1.21262 0.98345 0.96215 0.98642 1.20496 0.98070 0.98764 0.97261 1.74925 1.23698 1.03762 1.15989 1.78224 1.00785 1.14250 1.17192 0.91479 0.91274 0.94290 0.77247 0.90537 0.90381 0.92432 0.92111 0.91398 0.91506 0.91724 0.91348 0.92327 0.91134 0.91307 0.94202 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.12 13.29 21.45 0.28 -49.83 16 2 C 0.03 1.47 5.46 84.66 0.46 1.93 16 3 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.56 -30.91 9.17 25.60 0.23 -30.68 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.25 12.66 6.21 85.64 0.53 13.20 16 10 N -0.26 -12.23 3.43 -351.49 -1.21 -13.44 16 11 C -0.06 -2.07 10.80 83.49 0.90 -1.16 16 12 C -0.03 -1.13 5.90 41.60 0.25 -0.88 16 13 C 0.02 0.47 2.14 -13.40 -0.03 0.44 16 14 C -0.10 -2.12 4.44 30.20 0.13 -1.99 16 15 C -0.12 -1.89 5.31 30.14 0.16 -1.73 16 16 C -0.11 -1.53 5.85 31.32 0.18 -1.35 16 17 C -0.12 -1.78 5.32 30.14 0.16 -1.62 16 18 C -0.11 -1.87 5.61 30.20 0.17 -1.71 16 19 C -0.11 -2.58 4.43 28.74 0.13 -2.45 16 20 N -0.32 -14.43 12.41 -48.60 -0.60 -15.03 16 21 N -0.13 -6.30 12.92 37.02 0.48 -5.82 16 22 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 23 H 0.07 3.31 8.07 -2.38 -0.02 3.29 16 24 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.21 6.03 8.04 -2.91 -0.02 6.01 16 26 H 0.08 2.05 7.47 -2.39 -0.02 2.03 16 27 H 0.08 1.46 6.97 -2.39 -0.02 1.44 16 28 H 0.06 1.29 7.94 -2.39 -0.02 1.27 16 29 H 0.06 1.02 6.63 -2.39 -0.02 1.00 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.94 6.63 -2.38 -0.02 0.92 16 35 H 0.07 1.18 6.98 -2.39 -0.02 1.17 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 38 H 0.06 1.46 7.47 -2.39 -0.02 1.45 16 Total: -1.00 -62.84 302.83 5.29 -57.55 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.03 Total: 9.71 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.28 Total: -28.00 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -1.05 Total: -84.12 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -62.84 5.29 -57.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.033 kcal (2) G-P(sol) polarization free energy of solvation -62.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds