Wall clock time and date at job start Mon Mar 30 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 C 1.52995 * 109.47075 * 239.99628 * 2 1 3 5 5 C 1.50701 * 109.47127 * 119.99741 * 2 1 3 6 6 N 1.30841 * 126.46388 * 354.24687 * 5 2 1 7 7 N 1.28913 * 109.73785 * 179.97438 * 6 5 2 8 8 C 1.29843 * 109.47907 * 359.97205 * 7 6 5 9 9 N 1.34692 * 126.46669 * 174.24675 * 5 2 1 10 10 C 1.46260 * 128.84188 * 0.15987 * 9 5 2 11 11 C 1.53322 * 108.72903 * 162.88871 * 10 9 5 12 12 C 1.53143 * 109.57699 * 50.29339 * 11 10 9 13 13 C 1.50803 * 128.52270 * 180.11235 * 8 7 6 14 14 H 1.09000 * 109.72654 * 283.81906 * 13 8 7 15 15 C 1.50698 * 109.73012 * 44.45485 * 13 8 7 16 16 H 1.07997 * 120.00030 * 120.00204 * 15 13 8 17 17 C 1.37885 * 119.99969 * 299.99793 * 15 13 8 18 18 N 1.31516 * 119.99797 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 119.99965 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46986 * 269.99667 * 19 17 15 21 21 H 1.48502 * 109.47331 * 149.99851 * 19 17 15 22 22 H 1.48497 * 109.47365 * 29.99786 * 19 17 15 23 23 H 1.09004 * 109.46950 * 300.00060 * 1 2 3 24 24 H 1.08991 * 109.47091 * 59.99919 * 1 2 3 25 25 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46879 * 185.40076 * 3 2 1 27 27 H 1.09001 * 109.47212 * 305.39599 * 3 2 1 28 28 H 1.08995 * 109.47532 * 65.39672 * 3 2 1 29 29 H 1.09000 * 109.47241 * 300.00617 * 4 2 1 30 30 H 1.09008 * 109.46979 * 60.00239 * 4 2 1 31 31 H 1.08993 * 109.47230 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.59545 * 282.65757 * 10 9 5 33 33 H 1.09001 * 109.59639 * 42.96066 * 10 9 5 34 34 H 1.08998 * 109.45167 * 170.32937 * 11 10 9 35 35 H 1.09002 * 109.44588 * 290.25948 * 11 10 9 36 36 H 1.09002 * 109.50013 * 170.61642 * 12 11 10 37 37 H 1.09006 * 109.50433 * 50.51650 * 12 11 10 38 38 H 0.96993 * 119.99892 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.3045 -1.1600 2.2204 7 7 2.0640 -1.7131 3.1031 8 6 3.3013 -1.6409 2.7160 9 7 3.3153 -1.0021 1.5187 10 6 4.5191 -0.7127 0.7401 11 6 5.7418 -0.8476 1.6554 12 6 5.6826 -2.1864 2.3967 13 6 4.5357 -2.1509 3.4162 14 1 4.7936 -1.4845 4.2393 15 6 4.2835 -3.5391 3.9455 16 1 4.8938 -4.3643 3.6093 17 6 3.2737 -3.7558 4.8590 18 7 2.5303 -2.7509 5.2680 19 14 2.9615 -5.4764 5.5156 20 1 1.9814 -6.1696 4.6414 21 1 2.4191 -5.3890 6.8952 22 1 4.2358 -6.2387 5.5321 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1257 1.4440 -0.0967 27 1 1.5999 1.9835 -0.8377 28 1 1.7578 1.9277 0.9343 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7209 -1.2494 32 1 4.6001 -1.4209 -0.0847 33 1 4.4646 0.3022 0.3464 34 1 6.6508 -0.8046 1.0555 35 1 5.7455 -0.0320 2.3785 36 1 6.6257 -2.3567 2.9160 37 1 5.5100 -2.9910 1.6817 38 1 2.6927 -1.8574 4.9273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261051895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:18 Heat of formation + Delta-G solvation = 69.629910 kcal Electronic energy + Delta-G solvation = -19455.080606 eV Core-core repulsion = 16719.682727 eV Total energy + Delta-G solvation = -2735.397879 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.34098 -36.85207 -36.55705 -33.84049 -31.36390 -29.41010 -28.31378 -27.31702 -27.01868 -24.86615 -22.50838 -22.36641 -21.57059 -19.12098 -18.72299 -16.70046 -15.98714 -15.61122 -14.75889 -14.38592 -14.03644 -13.81176 -13.62971 -13.61191 -13.19294 -12.66954 -12.30140 -12.10939 -11.95716 -11.60875 -11.48302 -11.11245 -10.98991 -10.87922 -10.80098 -10.69391 -10.29744 -10.16924 -10.11681 -9.91615 -9.18624 -9.02672 -8.66807 -8.15065 -7.79421 -6.11573 -3.94790 2.82110 3.30751 3.53558 3.59189 3.72253 4.06946 4.57373 4.67743 4.80433 4.86598 4.98170 5.05280 5.19545 5.35581 5.44718 5.54478 5.56883 5.67244 5.70223 5.82210 5.83271 5.88215 5.97519 5.99415 6.04631 6.08532 6.27156 6.32249 6.34624 6.47201 6.60765 6.87812 6.95561 7.24308 7.32234 7.88080 8.15289 8.53284 9.06768 9.81513 9.98862 11.27531 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.008344 C = 0.006982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.280678 B = 3354.939359 C = 4009.070540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.027 3.973 3 C -0.141 4.141 4 C -0.145 4.145 5 C 0.142 3.858 6 N -0.309 5.309 7 N -0.260 5.260 8 C 0.209 3.791 9 N -0.481 5.481 10 C 0.110 3.890 11 C -0.137 4.137 12 C -0.108 4.108 13 C 0.112 3.888 14 H 0.041 0.959 15 C -0.622 4.622 16 H 0.053 0.947 17 C 0.029 3.971 18 N -0.852 5.852 19 Si 1.070 2.930 20 H -0.291 1.291 21 H -0.284 1.284 22 H -0.291 1.291 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 7.281 -12.841 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.025 3.975 3 C -0.199 4.199 4 C -0.203 4.203 5 C -0.125 4.125 6 N -0.149 5.149 7 N -0.097 5.097 8 C -0.058 4.058 9 N -0.174 5.174 10 C -0.014 4.014 11 C -0.175 4.175 12 C -0.146 4.146 13 C 0.091 3.909 14 H 0.059 0.941 15 C -0.660 4.660 16 H 0.072 0.928 17 C -0.184 4.184 18 N -0.485 5.485 19 Si 0.899 3.101 20 H -0.218 1.218 21 H -0.210 1.210 22 H -0.218 1.218 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.464 6.136 -10.941 12.629 hybrid contribution 2.065 1.082 -2.026 3.089 sum 3.529 7.217 -12.967 15.254 Atomic orbital electron populations 1.21647 0.92202 1.02859 1.01617 1.18807 0.96796 0.93459 0.88486 1.21936 1.00696 0.94852 1.02415 1.21982 1.01028 1.00905 0.96372 1.24137 0.81899 1.06076 1.00355 1.74505 1.27320 1.13152 0.99949 1.74698 0.98822 1.16876 1.19309 1.26951 0.99371 0.94775 0.84686 1.46147 1.06850 1.45108 1.19316 1.21887 0.83763 1.01257 0.94489 1.21987 0.95901 1.00673 0.98894 1.21660 1.00093 0.94475 0.98358 1.17711 0.83545 0.98107 0.91489 0.94144 1.21597 1.22244 0.91763 1.30377 0.92844 1.25657 0.92820 1.05088 0.94825 1.70548 1.36147 1.02512 1.39337 0.83544 0.75459 0.74499 0.76573 1.21761 1.21007 1.21780 0.91637 0.92622 0.91950 0.92865 0.91708 0.92128 0.92180 0.91721 0.92693 0.90591 0.90041 0.90451 0.91294 0.91258 0.92212 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 7.99 37.16 0.30 -1.48 16 2 C 0.03 0.40 0.83 -155.66 -0.13 0.27 16 3 C -0.14 -1.73 8.39 37.16 0.31 -1.42 16 4 C -0.14 -1.80 8.33 37.15 0.31 -1.50 16 5 C 0.14 2.91 6.32 -155.45 -0.98 1.92 16 6 N -0.31 -7.83 11.58 32.70 0.38 -7.45 16 7 N -0.26 -7.40 8.56 32.76 0.28 -7.12 16 8 C 0.21 5.29 6.56 -155.30 -1.02 4.27 16 9 N -0.48 -9.82 3.11 -110.85 -0.35 -10.17 16 10 C 0.11 1.65 5.30 -4.01 -0.02 1.63 16 11 C -0.14 -2.03 5.94 -26.49 -0.16 -2.19 16 12 C -0.11 -2.06 5.23 -26.40 -0.14 -2.19 16 13 C 0.11 2.80 2.21 -92.62 -0.20 2.59 16 14 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 15 C -0.62 -17.56 8.55 -34.44 -0.29 -17.86 16 16 H 0.05 1.49 7.75 -52.49 -0.41 1.08 16 17 C 0.03 0.85 5.13 -17.82 -0.09 0.76 16 18 N -0.85 -26.76 12.33 55.43 0.68 -26.08 16 19 Si 1.07 26.36 29.90 -169.99 -5.08 21.27 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.61 5.94 -51.93 -0.31 0.30 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.05 0.64 5.70 -51.93 -0.30 0.35 16 32 H 0.08 1.04 7.31 -51.93 -0.38 0.66 16 33 H 0.08 1.01 5.94 -51.93 -0.31 0.70 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.29 9.16 5.03 -40.82 -0.21 8.96 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -34.49 292.77 -7.56 -42.04 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.76 Total: -1.73 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.12 Total: -15.18 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 1.00 Total: -50.82 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.08 Total: 21.27 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.49 -7.56 -42.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.673 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds