Wall clock time and date at job start Mon Mar 30 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 C 1.52995 * 109.47075 * 239.99628 * 2 1 3 5 5 C 1.50701 * 109.47127 * 119.99741 * 2 1 3 6 6 N 1.30841 * 126.46388 * 354.24687 * 5 2 1 7 7 N 1.28913 * 109.73785 * 179.97438 * 6 5 2 8 8 C 1.29843 * 109.47907 * 359.97205 * 7 6 5 9 9 N 1.34692 * 126.46669 * 174.24675 * 5 2 1 10 10 C 1.46260 * 128.84188 * 0.15987 * 9 5 2 11 11 C 1.53322 * 108.72903 * 162.88871 * 10 9 5 12 12 C 1.53143 * 109.57699 * 50.29339 * 11 10 9 13 13 C 1.50803 * 128.52270 * 180.11235 * 8 7 6 14 14 H 1.09000 * 109.72654 * 283.81906 * 13 8 7 15 15 C 1.50698 * 109.73012 * 44.45485 * 13 8 7 16 16 H 1.07997 * 120.00030 * 120.00204 * 15 13 8 17 17 C 1.37885 * 119.99969 * 299.99793 * 15 13 8 18 18 N 1.31516 * 119.99797 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 119.99965 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46986 * 269.99667 * 19 17 15 21 21 H 1.48502 * 109.47331 * 149.99851 * 19 17 15 22 22 H 1.48497 * 109.47365 * 29.99786 * 19 17 15 23 23 H 1.09004 * 109.46950 * 300.00060 * 1 2 3 24 24 H 1.08991 * 109.47091 * 59.99919 * 1 2 3 25 25 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46879 * 185.40076 * 3 2 1 27 27 H 1.09001 * 109.47212 * 305.39599 * 3 2 1 28 28 H 1.08995 * 109.47532 * 65.39672 * 3 2 1 29 29 H 1.09000 * 109.47241 * 300.00617 * 4 2 1 30 30 H 1.09008 * 109.46979 * 60.00239 * 4 2 1 31 31 H 1.08993 * 109.47230 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.59545 * 282.65757 * 10 9 5 33 33 H 1.09001 * 109.59639 * 42.96066 * 10 9 5 34 34 H 1.08998 * 109.45167 * 170.32937 * 11 10 9 35 35 H 1.09002 * 109.44588 * 290.25948 * 11 10 9 36 36 H 1.09002 * 109.50013 * 170.61642 * 12 11 10 37 37 H 1.09006 * 109.50433 * 50.51650 * 12 11 10 38 38 H 0.96993 * 119.99892 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.3045 -1.1600 2.2204 7 7 2.0640 -1.7131 3.1031 8 6 3.3013 -1.6409 2.7160 9 7 3.3153 -1.0021 1.5187 10 6 4.5191 -0.7127 0.7401 11 6 5.7418 -0.8476 1.6554 12 6 5.6826 -2.1864 2.3967 13 6 4.5357 -2.1509 3.4162 14 1 4.7936 -1.4845 4.2393 15 6 4.2835 -3.5391 3.9455 16 1 4.8938 -4.3643 3.6093 17 6 3.2737 -3.7558 4.8590 18 7 2.5303 -2.7509 5.2680 19 14 2.9615 -5.4764 5.5156 20 1 1.9814 -6.1696 4.6414 21 1 2.4191 -5.3890 6.8952 22 1 4.2358 -6.2387 5.5321 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1257 1.4440 -0.0967 27 1 1.5999 1.9835 -0.8377 28 1 1.7578 1.9277 0.9343 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7209 -1.2494 32 1 4.6001 -1.4209 -0.0847 33 1 4.4646 0.3022 0.3464 34 1 6.6508 -0.8046 1.0555 35 1 5.7455 -0.0320 2.3785 36 1 6.6257 -2.3567 2.9160 37 1 5.5100 -2.9910 1.6817 38 1 2.6927 -1.8574 4.9273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261051895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:17 Heat of formation + Delta-G solvation = 47.940213 kcal Electronic energy + Delta-G solvation = -19456.021142 eV Core-core repulsion = 16719.682727 eV Total energy + Delta-G solvation = -2736.338414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.05456 -38.23363 -37.98694 -35.70714 -33.12384 -31.13451 -29.96740 -28.26194 -28.17435 -26.68755 -24.35777 -23.86934 -23.19080 -20.60100 -20.23596 -18.72843 -17.50650 -17.16981 -16.14945 -15.75716 -15.62536 -15.35979 -15.25309 -14.96678 -14.59913 -14.26551 -13.71407 -13.16836 -13.15129 -12.95519 -12.71715 -12.65816 -12.54314 -12.34629 -12.15200 -12.04367 -12.00469 -11.89042 -11.70788 -11.58702 -10.89340 -10.72257 -10.65505 -10.34484 -9.66483 -8.39929 -6.22642 1.17019 1.50883 1.61267 1.76854 1.81277 2.21957 2.64972 3.29378 3.35885 3.55936 3.74443 3.79517 3.94929 4.00124 4.03261 4.23670 4.28191 4.44599 4.53294 4.65119 4.70436 4.78202 4.81712 4.89215 4.92340 4.94406 4.96968 5.01039 5.11834 5.22661 5.28414 5.33875 5.42044 5.45063 5.56363 6.02779 6.22024 6.42054 6.78554 7.62828 8.18263 8.98820 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.008344 C = 0.006982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.280678 B = 3354.939359 C = 4009.070540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.022 3.978 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.167 3.833 6 N -0.367 5.367 7 N -0.318 5.318 8 C 0.187 3.813 9 N -0.475 5.475 10 C 0.097 3.903 11 C -0.127 4.127 12 C -0.101 4.101 13 C 0.103 3.897 14 H 0.012 0.988 15 C -0.633 4.633 16 H 0.052 0.948 17 C -0.023 4.023 18 N -0.888 5.888 19 Si 1.112 2.888 20 H -0.292 1.292 21 H -0.283 1.283 22 H -0.263 1.263 23 H 0.043 0.957 24 H 0.098 0.902 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 8.379 -16.378 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.020 3.980 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.102 4.102 6 N -0.206 5.206 7 N -0.154 5.154 8 C -0.082 4.082 9 N -0.167 5.167 10 C -0.024 4.024 11 C -0.165 4.165 12 C -0.139 4.139 13 C 0.082 3.918 14 H 0.030 0.970 15 C -0.671 4.671 16 H 0.070 0.930 17 C -0.230 4.230 18 N -0.523 5.523 19 Si 0.936 3.064 20 H -0.219 1.219 21 H -0.209 1.209 22 H -0.188 1.188 23 H 0.062 0.938 24 H 0.117 0.883 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.185 7.242 -14.500 16.518 hybrid contribution 1.543 0.819 -1.020 2.023 sum 4.729 8.060 -15.520 18.116 Atomic orbital electron populations 1.21657 0.92112 1.01708 1.02644 1.19249 0.97007 0.94944 0.86849 1.21925 1.01822 0.92593 1.02979 1.21982 1.01833 0.99794 0.96168 1.25284 0.81513 1.02993 1.00381 1.74367 1.28668 1.15851 1.01710 1.74532 1.00685 1.18676 1.21541 1.26548 0.98470 0.96431 0.86790 1.46311 1.08498 1.43736 1.18150 1.22454 0.81416 1.04151 0.94406 1.21979 0.98064 0.97423 0.99011 1.21562 0.97907 0.97223 0.97205 1.17681 0.85865 0.95686 0.92534 0.97004 1.22000 1.21508 0.93495 1.30097 0.92977 1.27009 0.92872 1.07644 0.95426 1.70631 1.37861 1.02624 1.41148 0.83020 0.76466 0.71056 0.75879 1.21937 1.20913 1.18759 0.93820 0.88299 0.94252 0.91386 0.87880 0.94263 0.94249 0.87807 0.91411 0.88289 0.86188 0.85289 0.91823 0.90150 0.92746 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 7.99 71.98 0.58 -2.74 16 2 C 0.02 0.60 0.83 -52.93 -0.04 0.55 16 3 C -0.14 -2.75 8.39 71.98 0.60 -2.15 16 4 C -0.14 -2.88 8.33 71.98 0.60 -2.28 16 5 C 0.17 6.78 6.32 138.14 0.87 7.66 16 6 N -0.37 -19.41 11.58 -50.46 -0.58 -20.00 16 7 N -0.32 -19.05 8.56 -50.28 -0.43 -19.48 16 8 C 0.19 9.76 6.56 138.14 0.91 10.67 16 9 N -0.48 -18.96 3.11 -504.63 -1.57 -20.53 16 10 C 0.10 2.53 5.30 86.53 0.46 2.99 16 11 C -0.13 -3.33 5.94 30.75 0.18 -3.14 16 12 C -0.10 -3.72 5.23 30.81 0.16 -3.56 16 13 C 0.10 5.30 2.21 -12.09 -0.03 5.27 16 14 H 0.01 0.68 8.03 -2.39 -0.02 0.66 16 15 C -0.63 -36.90 8.55 25.60 0.22 -36.69 16 16 H 0.05 2.95 7.75 -2.91 -0.02 2.93 16 17 C -0.02 -1.41 5.13 84.66 0.43 -0.98 16 18 N -0.89 -58.90 12.33 21.45 0.26 -58.63 16 19 Si 1.11 54.66 29.90 68.60 2.05 56.71 16 20 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 21 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 23 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.18 5.94 -2.39 -0.01 1.16 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.22 5.70 -2.39 -0.01 1.21 16 32 H 0.10 2.21 7.31 -2.38 -0.02 2.19 16 33 H 0.12 2.26 5.94 -2.39 -0.01 2.25 16 34 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 1.76 8.12 -2.39 -0.02 1.74 16 36 H 0.08 2.73 8.14 -2.39 -0.02 2.72 16 37 H 0.05 2.05 8.08 -2.38 -0.02 2.03 16 38 H 0.28 18.75 5.03 -92.71 -0.47 18.29 16 Total: -1.00 -83.66 292.77 6.01 -77.64 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.34 Total: 8.68 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 4.94 Total: -24.40 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -2.32 Total: -118.64 kcal Atomic # 14 Polarization: 54.66 SS G_CDS: 2.05 Total: 56.71 kcal Total: -83.66 6.01 -77.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.585 kcal (2) G-P(sol) polarization free energy of solvation -83.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds