Wall clock time and date at job start Mon Mar 30 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46877 * 2 1 4 4 C 1.53000 * 109.46843 * 119.99259 * 2 1 3 5 5 C 1.50699 * 109.46940 * 65.00909 * 4 2 1 6 6 N 1.33472 * 125.49208 * 269.99293 * 5 4 2 7 7 C 1.30335 * 109.72395 * 179.97438 * 6 5 4 8 8 N 1.34673 * 108.04544 * 0.06321 * 7 6 5 9 9 N 1.30978 * 125.50263 * 89.99773 * 5 4 2 10 10 C 1.46297 * 125.04711 * 179.88363 * 8 7 6 11 11 H 1.08995 * 109.70427 * 102.84578 * 10 8 7 12 12 C 1.50702 * 109.58963 * 223.20515 * 10 8 7 13 13 H 1.07994 * 120.00163 * 119.28636 * 12 10 8 14 14 C 1.37883 * 119.99692 * 299.28913 * 12 10 8 15 15 N 1.31514 * 119.99825 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00023 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47126 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47146 * 119.99431 * 16 14 12 19 19 H 1.48498 * 109.46978 * 239.99974 * 16 14 12 20 20 C 1.53308 * 108.77302 * 342.98803 * 10 8 7 21 21 C 1.53161 * 109.48050 * 50.13661 * 20 10 8 22 22 C 1.50934 * 127.90238 * 180.10816 * 7 6 5 23 23 H 1.09000 * 109.47506 * 300.00480 * 1 2 3 24 24 H 1.09005 * 109.46778 * 60.00690 * 1 2 3 25 25 H 1.09003 * 109.46954 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47594 * 239.99847 * 2 1 3 27 27 H 1.08998 * 109.46827 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46909 * 299.99311 * 3 2 1 29 29 H 1.09000 * 109.47444 * 59.99482 * 3 2 1 30 30 H 1.09000 * 109.47699 * 305.00518 * 4 2 1 31 31 H 1.09001 * 109.46986 * 184.99958 * 4 2 1 32 32 H 0.97001 * 119.99409 * 180.02562 * 15 14 12 33 33 H 1.09002 * 109.46911 * 170.13994 * 20 10 8 34 34 H 1.09001 * 109.47020 * 290.13770 * 20 10 8 35 35 H 1.08999 * 109.50667 * 50.75021 * 21 20 10 36 36 H 1.09002 * 109.50608 * 170.88101 * 21 20 10 37 37 H 1.08998 * 109.71710 * 283.70463 * 22 7 6 38 38 H 1.09002 * 109.71331 * 44.34886 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6413 -2.1732 1.1890 6 7 0.5078 -2.6864 1.6719 7 6 0.4785 -3.9710 1.4537 8 7 1.6147 -4.3119 0.8161 9 7 2.3514 -3.1352 0.6544 10 6 1.9670 -5.6677 0.3944 11 1 1.8050 -5.7726 -0.6784 12 6 3.4147 -5.9366 0.7154 13 1 3.6785 -6.7381 1.3893 14 6 4.4024 -5.1591 0.1486 15 7 4.0811 -4.1833 -0.6725 16 14 6.1968 -5.4928 0.5459 17 1 6.2908 -6.6368 1.4882 18 1 6.9282 -5.8195 -0.7045 19 1 6.7980 -4.2871 1.1705 20 6 1.0797 -6.6651 1.1481 21 6 -0.3864 -6.2395 1.0244 22 6 -0.6082 -4.9501 1.8258 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9565 0.8899 30 1 1.6052 -0.2616 2.1371 31 1 3.1262 -0.6442 1.2953 32 1 4.7760 -3.6367 -1.0714 33 1 1.2066 -7.6596 0.7204 34 1 1.3653 -6.6828 2.1999 35 1 -0.6268 -6.0624 -0.0239 36 1 -1.0286 -7.0275 1.4177 37 1 -0.5582 -5.1671 2.8928 38 1 -1.5830 -4.5280 1.5811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:34 Heat of formation + Delta-G solvation = 65.353652 kcal Electronic energy + Delta-G solvation = -18993.472084 eV Core-core repulsion = 16257.888773 eV Total energy + Delta-G solvation = -2735.583311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91318 -36.61990 -35.36588 -33.27115 -31.16745 -29.93308 -28.65915 -26.73698 -26.60274 -25.27530 -22.21924 -21.52847 -20.17275 -18.87598 -18.30650 -16.76059 -15.41436 -14.79820 -14.65834 -14.47049 -13.98608 -13.72510 -13.40464 -13.22043 -12.96710 -12.55565 -11.92402 -11.81356 -11.54942 -11.38923 -11.28925 -11.01987 -10.94905 -10.60211 -10.54613 -10.47321 -10.43130 -10.25587 -10.13033 -9.93329 -9.24037 -8.94388 -8.21105 -8.12796 -7.79946 -6.10325 -4.29774 3.14717 3.23425 3.31982 3.34265 3.94112 4.07805 4.32521 4.89313 5.20811 5.30758 5.34466 5.39168 5.39638 5.44429 5.64596 5.86313 5.94633 6.01715 6.03030 6.10947 6.16127 6.19477 6.24256 6.33932 6.35762 6.42061 6.47636 6.50789 6.67230 6.79025 6.80343 6.99790 7.21813 7.67444 7.70937 7.92816 8.04334 8.39876 8.76843 9.40323 9.60369 10.88911 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.009826 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.856841 B = 2848.900140 C = 4242.077933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.004 4.004 5 C 0.136 3.864 6 N -0.558 5.558 7 C 0.207 3.793 8 N -0.313 5.313 9 N -0.205 5.205 10 C 0.265 3.735 11 H 0.052 0.948 12 C -0.550 4.550 13 H 0.066 0.934 14 C 0.079 3.921 15 N -0.806 5.806 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.027 4.027 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 2.723 1.642 7.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.044 4.044 5 C -0.144 4.144 6 N -0.289 5.289 7 C -0.068 4.068 8 N -0.106 5.106 9 N -0.034 5.034 10 C 0.168 3.832 11 H 0.070 0.930 12 C -0.588 4.588 13 H 0.085 0.915 14 C -0.133 4.133 15 N -0.437 5.437 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.067 4.067 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.961 3.060 1.279 6.821 hybrid contribution 0.935 -0.290 0.231 1.005 sum -5.026 2.770 1.510 5.934 Atomic orbital electron populations 1.21762 0.95146 1.02438 1.00195 1.21040 0.96128 0.95202 0.98535 1.21816 1.00841 0.96173 1.01189 1.19650 1.00297 0.86544 0.97913 1.24305 0.91266 0.97375 1.01480 1.69798 1.23917 1.06688 1.28502 1.23983 0.92001 0.92049 0.98810 1.52269 1.11141 1.08761 1.38469 1.78959 1.16179 0.89632 1.18587 1.19291 0.95122 0.73843 0.94927 0.93048 1.21051 0.88921 1.18245 1.30584 0.91539 1.25026 0.99319 0.94285 0.94701 1.70072 1.32928 1.15172 1.25481 0.86502 0.84708 0.78328 0.78266 1.19696 1.20803 1.20823 1.21972 0.93058 0.99573 1.01572 1.21752 0.97956 0.96380 1.00392 1.20052 0.94522 0.91745 1.00397 0.93113 0.93976 0.91883 0.91027 0.92814 0.93054 0.92934 0.90983 0.90943 0.92647 0.90619 0.91810 0.91789 0.91286 0.90112 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.00 37.16 0.33 -1.90 16 2 C -0.09 -1.51 2.91 -90.62 -0.26 -1.77 16 3 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 4 C 0.00 -0.08 5.32 -27.88 -0.15 -0.23 16 5 C 0.14 3.22 6.61 -156.43 -1.03 2.19 16 6 N -0.56 -12.90 10.47 -8.02 -0.08 -12.98 16 7 C 0.21 4.64 7.72 -155.77 -1.20 3.44 16 8 N -0.31 -7.88 3.76 -52.95 -0.20 -8.08 16 9 N -0.20 -5.46 9.31 32.50 0.30 -5.15 16 10 C 0.27 6.43 3.05 -69.03 -0.21 6.22 16 11 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 12 C -0.55 -14.61 8.72 -34.44 -0.30 -14.91 16 13 H 0.07 1.73 7.75 -52.49 -0.41 1.33 16 14 C 0.08 2.13 5.08 -17.82 -0.09 2.04 16 15 N -0.81 -22.64 10.48 55.43 0.58 -22.06 16 16 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C -0.12 -2.31 5.20 -26.49 -0.14 -2.45 16 21 C -0.13 -1.98 5.96 -26.43 -0.16 -2.14 16 22 C -0.03 -0.46 6.33 -27.55 -0.17 -0.64 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 1.20 6.81 -51.93 -0.35 0.84 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 35 H 0.06 1.02 8.12 -51.93 -0.42 0.59 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -30.51 304.90 -9.10 -39.61 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.23 Total: -0.22 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.04 Total: -11.71 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.60 Total: -48.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.51 -9.10 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.968 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds