Wall clock time and date at job start Mon Mar 30 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46877 * 2 1 4 4 C 1.53000 * 109.46843 * 119.99259 * 2 1 3 5 5 C 1.50699 * 109.46940 * 65.00909 * 4 2 1 6 6 N 1.33472 * 125.49208 * 269.99293 * 5 4 2 7 7 C 1.30335 * 109.72395 * 179.97438 * 6 5 4 8 8 N 1.34673 * 108.04544 * 0.06321 * 7 6 5 9 9 N 1.30978 * 125.50263 * 89.99773 * 5 4 2 10 10 C 1.46297 * 125.04711 * 179.88363 * 8 7 6 11 11 H 1.08995 * 109.70427 * 102.84578 * 10 8 7 12 12 C 1.50702 * 109.58963 * 223.20515 * 10 8 7 13 13 H 1.07994 * 120.00163 * 119.28636 * 12 10 8 14 14 C 1.37883 * 119.99692 * 299.28913 * 12 10 8 15 15 N 1.31514 * 119.99825 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00023 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47126 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47146 * 119.99431 * 16 14 12 19 19 H 1.48498 * 109.46978 * 239.99974 * 16 14 12 20 20 C 1.53308 * 108.77302 * 342.98803 * 10 8 7 21 21 C 1.53161 * 109.48050 * 50.13661 * 20 10 8 22 22 C 1.50934 * 127.90238 * 180.10816 * 7 6 5 23 23 H 1.09000 * 109.47506 * 300.00480 * 1 2 3 24 24 H 1.09005 * 109.46778 * 60.00690 * 1 2 3 25 25 H 1.09003 * 109.46954 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47594 * 239.99847 * 2 1 3 27 27 H 1.08998 * 109.46827 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46909 * 299.99311 * 3 2 1 29 29 H 1.09000 * 109.47444 * 59.99482 * 3 2 1 30 30 H 1.09000 * 109.47699 * 305.00518 * 4 2 1 31 31 H 1.09001 * 109.46986 * 184.99958 * 4 2 1 32 32 H 0.97001 * 119.99409 * 180.02562 * 15 14 12 33 33 H 1.09002 * 109.46911 * 170.13994 * 20 10 8 34 34 H 1.09001 * 109.47020 * 290.13770 * 20 10 8 35 35 H 1.08999 * 109.50667 * 50.75021 * 21 20 10 36 36 H 1.09002 * 109.50608 * 170.88101 * 21 20 10 37 37 H 1.08998 * 109.71710 * 283.70463 * 22 7 6 38 38 H 1.09002 * 109.71331 * 44.34886 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6413 -2.1732 1.1890 6 7 0.5078 -2.6864 1.6719 7 6 0.4785 -3.9710 1.4537 8 7 1.6147 -4.3119 0.8161 9 7 2.3514 -3.1352 0.6544 10 6 1.9670 -5.6677 0.3944 11 1 1.8050 -5.7726 -0.6784 12 6 3.4147 -5.9366 0.7154 13 1 3.6785 -6.7381 1.3893 14 6 4.4024 -5.1591 0.1486 15 7 4.0811 -4.1833 -0.6725 16 14 6.1968 -5.4928 0.5459 17 1 6.2908 -6.6368 1.4882 18 1 6.9282 -5.8195 -0.7045 19 1 6.7980 -4.2871 1.1705 20 6 1.0797 -6.6651 1.1481 21 6 -0.3864 -6.2395 1.0244 22 6 -0.6082 -4.9501 1.8258 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9565 0.8899 30 1 1.6052 -0.2616 2.1371 31 1 3.1262 -0.6442 1.2953 32 1 4.7760 -3.6367 -1.0714 33 1 1.2066 -7.6596 0.7204 34 1 1.3653 -6.6828 2.1999 35 1 -0.6268 -6.0624 -0.0239 36 1 -1.0286 -7.0275 1.4177 37 1 -0.5582 -5.1671 2.8928 38 1 -1.5830 -4.5280 1.5811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261064464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:33 Heat of formation + Delta-G solvation = 48.594158 kcal Electronic energy + Delta-G solvation = -18994.198830 eV Core-core repulsion = 16257.888773 eV Total energy + Delta-G solvation = -2736.310057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.69484 -38.16992 -36.80814 -35.09883 -33.01965 -31.54893 -30.42139 -28.13323 -27.93499 -27.14064 -23.88086 -23.17672 -21.71238 -20.48723 -19.89958 -18.75904 -17.13038 -16.63003 -16.37613 -15.99034 -15.48420 -15.11729 -14.90207 -14.84887 -14.49378 -14.15438 -13.28307 -13.20635 -13.03721 -13.02298 -12.88672 -12.71028 -12.62621 -12.28315 -12.16061 -11.86539 -11.81336 -11.74061 -11.65750 -11.54249 -11.00019 -10.90026 -10.12603 -9.98281 -9.64585 -8.13425 -6.38620 1.31456 1.36157 1.39954 1.47067 2.18246 2.32358 2.36544 3.20691 3.35803 3.87052 3.94656 4.00684 4.08923 4.10132 4.20396 4.42767 4.51775 4.68312 4.70315 4.73413 4.85166 4.91795 4.93239 4.99646 5.05343 5.07943 5.12476 5.18380 5.25208 5.31608 5.44940 5.49538 5.51851 5.64305 5.86992 6.09607 6.17000 6.51248 6.82696 7.34656 7.78295 8.84745 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.009826 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.856841 B = 2848.900140 C = 4242.077933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.134 4.134 4 C -0.004 4.004 5 C 0.135 3.865 6 N -0.568 5.568 7 C 0.207 3.793 8 N -0.334 5.334 9 N -0.262 5.262 10 C 0.259 3.741 11 H 0.018 0.982 12 C -0.570 4.570 13 H 0.066 0.934 14 C 0.032 3.968 15 N -0.835 5.835 16 Si 0.953 3.047 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.290 1.290 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.027 4.027 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.259 0.741 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.934 2.790 2.789 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.104 4.104 3 C -0.191 4.191 4 C -0.044 4.044 5 C -0.146 4.146 6 N -0.299 5.299 7 C -0.069 4.069 8 N -0.127 5.127 9 N -0.090 5.090 10 C 0.161 3.839 11 H 0.036 0.964 12 C -0.608 4.608 13 H 0.084 0.916 14 C -0.177 4.177 15 N -0.467 5.467 16 Si 0.779 3.221 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.217 1.217 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.067 4.067 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.379 3.109 2.424 8.366 hybrid contribution 1.304 -0.294 -0.117 1.342 sum -6.075 2.815 2.307 7.082 Atomic orbital electron populations 1.21680 0.94366 1.00742 1.01932 1.20984 0.96703 0.96913 0.95824 1.21747 1.00891 0.93579 1.02931 1.19843 1.00105 0.84593 0.99890 1.25072 0.90968 0.98682 0.99900 1.69884 1.23740 1.07150 1.29108 1.25153 0.92143 0.92814 0.96778 1.51971 1.12234 1.08607 1.39864 1.78850 1.18415 0.90857 1.20913 1.19280 0.95581 0.74926 0.94067 0.96390 1.21381 0.90602 1.18302 1.30500 0.91568 1.25762 1.03009 0.94183 0.94696 1.70227 1.33539 1.16135 1.26754 0.85593 0.80385 0.77840 0.78282 1.18830 1.19987 1.21676 1.21909 0.94257 0.98743 1.00439 1.21732 0.96223 0.97096 1.00308 1.20389 0.93568 0.90910 1.01816 0.91545 0.92009 0.95193 0.94302 0.92768 0.91412 0.91044 0.89128 0.91613 0.93216 0.88825 0.92091 0.92357 0.86441 0.87957 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.00 71.98 0.65 -3.41 16 2 C -0.08 -2.82 2.91 -10.79 -0.03 -2.85 16 3 C -0.13 -3.33 9.19 71.98 0.66 -2.66 16 4 C 0.00 -0.17 5.32 29.85 0.16 -0.01 16 5 C 0.14 6.51 6.61 138.48 0.92 7.42 16 6 N -0.57 -26.14 10.47 -179.30 -1.88 -28.02 16 7 C 0.21 9.17 7.72 138.37 1.07 10.24 16 8 N -0.33 -17.18 3.76 -321.42 -1.21 -18.39 16 9 N -0.26 -14.49 9.31 -51.07 -0.48 -14.96 16 10 C 0.26 12.85 3.05 44.39 0.14 12.99 16 11 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 12 C -0.57 -31.01 8.72 25.60 0.22 -30.78 16 13 H 0.07 3.49 7.75 -2.91 -0.02 3.47 16 14 C 0.03 1.80 5.08 84.66 0.43 2.23 16 15 N -0.83 -49.02 10.48 21.45 0.22 -48.80 16 16 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 C -0.11 -4.16 5.20 30.75 0.16 -4.00 16 21 C -0.12 -3.26 5.96 30.79 0.18 -3.07 16 22 C -0.03 -0.85 6.33 30.06 0.19 -0.66 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.03 1.12 6.81 -2.39 -0.02 1.10 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.06 2.23 8.09 -2.39 -0.02 2.22 16 35 H 0.06 1.72 8.12 -2.39 -0.02 1.70 16 36 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -69.55 304.90 4.45 -65.09 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.02 Total: 13.40 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 4.74 Total: -14.56 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -3.34 Total: -110.17 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.55 4.45 -65.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.688 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds