Wall clock time and date at job start Mon Mar 30 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 C 1.53002 * 109.47438 * 120.00486 * 2 1 3 5 5 C 1.50706 * 109.46925 * 64.99636 * 4 2 1 6 6 N 1.30840 * 126.46481 * 90.03024 * 5 4 2 7 7 N 1.28905 * 109.74166 * 180.02562 * 6 5 4 8 8 C 1.29843 * 109.47748 * 0.02562 * 7 6 5 9 9 N 1.34693 * 126.46556 * 269.70824 * 5 4 2 10 10 C 1.46258 * 128.84158 * 359.88422 * 9 5 4 11 11 C 1.53320 * 108.71955 * 197.13017 * 10 9 5 12 12 C 1.53136 * 109.57739 * 309.68835 * 11 10 9 13 13 C 1.50798 * 128.52521 * 179.87097 * 8 7 6 14 14 H 1.08999 * 109.73177 * 76.23073 * 13 8 7 15 15 C 1.50704 * 109.72900 * 315.55795 * 13 8 7 16 16 H 1.07997 * 119.99700 * 239.99799 * 15 13 8 17 17 C 1.37873 * 120.00178 * 60.00142 * 15 13 8 18 18 N 1.31515 * 119.99973 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00294 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47326 * 89.99463 * 19 17 15 21 21 H 1.48497 * 109.47526 * 209.99994 * 19 17 15 22 22 H 1.48506 * 109.46865 * 329.99616 * 19 17 15 23 23 H 1.09001 * 109.47049 * 299.99375 * 1 2 3 24 24 H 1.09001 * 109.47593 * 59.99409 * 1 2 3 25 25 H 1.09007 * 109.47359 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46833 * 240.00166 * 2 1 3 27 27 H 1.09008 * 109.47032 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46896 * 300.00144 * 3 2 1 29 29 H 1.08993 * 109.46808 * 60.00656 * 3 2 1 30 30 H 1.09000 * 109.46497 * 304.99899 * 4 2 1 31 31 H 1.09000 * 109.47312 * 184.99678 * 4 2 1 32 32 H 1.08999 * 109.59514 * 316.90075 * 10 9 5 33 33 H 1.08998 * 109.59651 * 77.36273 * 10 9 5 34 34 H 1.08997 * 109.45032 * 69.72659 * 11 10 9 35 35 H 1.09006 * 109.45122 * 189.65021 * 11 10 9 36 36 H 1.09005 * 109.49538 * 189.38547 * 12 11 10 37 37 H 1.08998 * 109.49917 * 309.45416 * 12 11 10 38 38 H 0.97006 * 120.00330 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 -2.1734 1.1887 6 7 2.3349 -3.1490 0.6603 7 7 1.6910 -4.2586 0.7855 8 6 0.5656 -4.0397 1.3951 9 7 0.5064 -2.7128 1.6738 10 6 -0.6000 -2.0528 2.3663 11 6 -1.4347 -3.1179 3.0870 12 6 -1.7824 -4.2450 2.1103 13 6 -0.5131 -5.0285 1.7594 14 1 -0.2009 -5.6109 2.6263 15 6 -0.7743 -5.9486 0.5948 16 1 -1.7572 -5.9898 0.1492 17 6 0.2415 -6.7376 0.0982 18 7 1.4385 -6.6869 0.6406 19 14 -0.0821 -7.8775 -1.3459 20 1 0.1920 -7.1579 -2.6157 21 1 0.8049 -9.0644 -1.2481 22 1 -1.5006 -8.3164 -1.3219 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1264 -0.6445 1.2950 32 1 -0.2049 -1.3439 3.0938 33 1 -1.2233 -1.5281 1.6423 34 1 -0.8629 -3.5240 3.9214 35 1 -2.3532 -2.6666 3.4625 36 1 -2.5093 -4.9141 2.5709 37 1 -2.2048 -3.8200 1.1998 38 1 2.1533 -7.2418 0.2910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261078122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:23 Heat of formation + Delta-G solvation = 64.502417 kcal Electronic energy + Delta-G solvation = -19182.292706 eV Core-core repulsion = 16446.672483 eV Total energy + Delta-G solvation = -2735.620223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.03812 -36.43044 -36.37316 -33.54703 -31.46254 -29.88876 -29.13607 -27.15395 -25.97917 -25.19155 -22.45680 -21.69699 -20.85247 -19.33695 -18.53116 -16.56827 -15.86905 -15.59564 -14.78529 -14.49219 -14.24263 -13.74394 -13.46205 -13.31136 -13.12510 -12.70607 -12.42711 -12.21034 -11.80257 -11.59693 -11.55798 -10.87194 -10.86179 -10.83642 -10.60095 -10.53535 -10.47017 -10.22390 -9.92820 -9.63297 -9.31982 -8.97274 -8.74153 -8.21221 -7.55362 -5.82821 -3.96098 3.01018 3.40151 3.47436 3.47826 3.51661 4.35299 4.56267 4.85962 4.92844 4.99460 5.03161 5.13747 5.30595 5.42842 5.45697 5.52667 5.62518 5.70964 5.73813 5.83131 5.88871 5.95115 5.96572 6.03751 6.15891 6.18282 6.35144 6.41766 6.43229 6.52360 6.72091 7.07761 7.18944 7.49619 7.55542 7.97981 8.13525 8.33354 9.00108 9.68948 10.28955 11.19454 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.025067 B = 0.007726 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.742084 B = 3623.036931 C = 4136.574838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.015 4.015 5 C 0.126 3.874 6 N -0.324 5.324 7 N -0.226 5.226 8 C 0.223 3.777 9 N -0.487 5.487 10 C 0.110 3.890 11 C -0.135 4.135 12 C -0.115 4.115 13 C 0.128 3.872 14 H 0.049 0.951 15 C -0.547 4.547 16 H 0.060 0.940 17 C 0.077 3.923 18 N -0.817 5.817 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 13.857 3.854 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.055 4.055 5 C -0.140 4.140 6 N -0.165 5.165 7 N -0.061 5.061 8 C -0.043 4.043 9 N -0.182 5.182 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.153 4.153 13 C 0.107 3.893 14 H 0.067 0.933 15 C -0.585 4.585 16 H 0.078 0.922 17 C -0.133 4.133 18 N -0.449 5.449 19 Si 0.716 3.284 20 H -0.209 1.209 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.554 13.034 3.161 13.653 hybrid contribution -1.104 0.189 -0.215 1.141 sum -3.658 13.223 2.946 14.032 Atomic orbital electron populations 1.21989 0.95538 1.02078 1.01193 1.21113 0.95826 0.95656 0.98601 1.21816 1.01072 0.95693 1.01508 1.19853 1.01742 0.85986 0.97872 1.24103 0.87535 0.97861 1.04535 1.74606 1.26327 0.95945 1.19627 1.74805 1.03141 1.13127 1.15062 1.26531 0.98313 0.81629 0.97854 1.46320 1.16644 1.09797 1.45429 1.21807 0.87714 0.95886 0.95980 1.21950 0.99228 0.96804 0.99315 1.21725 0.99887 0.96102 0.97635 1.17448 0.84670 0.88988 0.98158 0.93349 1.20640 0.97139 1.23429 1.17293 0.92209 1.24955 0.94971 0.96689 0.96648 1.70020 1.00554 1.35271 1.39016 0.86670 0.77859 0.80469 0.83380 1.20862 1.21211 1.20077 0.92962 0.92833 0.92258 0.90487 0.92512 0.92718 0.92847 0.91404 0.89497 0.90636 0.90463 0.91321 0.90713 0.91403 0.92427 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 7.90 37.16 0.29 -1.63 16 2 C -0.09 -1.22 2.91 -90.62 -0.26 -1.49 16 3 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 4 C -0.01 -0.22 5.10 -27.88 -0.14 -0.36 16 5 C 0.13 2.59 6.51 -155.45 -1.01 1.58 16 6 N -0.32 -8.29 12.23 32.70 0.40 -7.89 16 7 N -0.23 -6.43 9.26 32.76 0.30 -6.12 16 8 C 0.22 5.65 6.88 -155.30 -1.07 4.58 16 9 N -0.49 -9.96 2.72 -110.86 -0.30 -10.26 16 10 C 0.11 1.66 5.94 -4.01 -0.02 1.64 16 11 C -0.14 -2.01 5.94 -26.50 -0.16 -2.17 16 12 C -0.12 -2.17 5.25 -26.54 -0.14 -2.31 16 13 C 0.13 3.16 2.48 -92.75 -0.23 2.93 16 14 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.55 -15.03 8.57 -34.44 -0.30 -15.32 16 16 H 0.06 1.60 7.76 -52.49 -0.41 1.20 16 17 C 0.08 2.19 5.13 -17.82 -0.09 2.10 16 18 N -0.82 -24.39 10.56 55.43 0.59 -23.81 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.93 5.49 -51.92 -0.29 0.64 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 0.94 7.84 -51.93 -0.41 0.53 16 33 H 0.08 1.06 6.21 -51.93 -0.32 0.74 16 34 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -33.01 298.38 -8.35 -41.36 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -6.03 Total: -3.18 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.79 Total: -11.55 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.99 Total: -48.09 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.01 -8.35 -41.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.860 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds