Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 C 1.53002 * 109.47438 * 120.00486 * 2 1 3 5 5 C 1.50706 * 109.46925 * 64.99636 * 4 2 1 6 6 N 1.30840 * 126.46481 * 90.03024 * 5 4 2 7 7 N 1.28905 * 109.74166 * 180.02562 * 6 5 4 8 8 C 1.29843 * 109.47748 * 0.02562 * 7 6 5 9 9 N 1.34693 * 126.46556 * 269.70824 * 5 4 2 10 10 C 1.46258 * 128.84158 * 359.88422 * 9 5 4 11 11 C 1.53320 * 108.71955 * 197.13017 * 10 9 5 12 12 C 1.53136 * 109.57739 * 309.68835 * 11 10 9 13 13 C 1.50798 * 128.52521 * 179.87097 * 8 7 6 14 14 H 1.08999 * 109.73177 * 76.23073 * 13 8 7 15 15 C 1.50704 * 109.72900 * 315.55795 * 13 8 7 16 16 H 1.07997 * 119.99700 * 239.99799 * 15 13 8 17 17 C 1.37873 * 120.00178 * 60.00142 * 15 13 8 18 18 N 1.31515 * 119.99973 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00294 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47326 * 89.99463 * 19 17 15 21 21 H 1.48497 * 109.47526 * 209.99994 * 19 17 15 22 22 H 1.48506 * 109.46865 * 329.99616 * 19 17 15 23 23 H 1.09001 * 109.47049 * 299.99375 * 1 2 3 24 24 H 1.09001 * 109.47593 * 59.99409 * 1 2 3 25 25 H 1.09007 * 109.47359 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46833 * 240.00166 * 2 1 3 27 27 H 1.09008 * 109.47032 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46896 * 300.00144 * 3 2 1 29 29 H 1.08993 * 109.46808 * 60.00656 * 3 2 1 30 30 H 1.09000 * 109.46497 * 304.99899 * 4 2 1 31 31 H 1.09000 * 109.47312 * 184.99678 * 4 2 1 32 32 H 1.08999 * 109.59514 * 316.90075 * 10 9 5 33 33 H 1.08998 * 109.59651 * 77.36273 * 10 9 5 34 34 H 1.08997 * 109.45032 * 69.72659 * 11 10 9 35 35 H 1.09006 * 109.45122 * 189.65021 * 11 10 9 36 36 H 1.09005 * 109.49538 * 189.38547 * 12 11 10 37 37 H 1.08998 * 109.49917 * 309.45416 * 12 11 10 38 38 H 0.97006 * 120.00330 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 -2.1734 1.1887 6 7 2.3349 -3.1490 0.6603 7 7 1.6910 -4.2586 0.7855 8 6 0.5656 -4.0397 1.3951 9 7 0.5064 -2.7128 1.6738 10 6 -0.6000 -2.0528 2.3663 11 6 -1.4347 -3.1179 3.0870 12 6 -1.7824 -4.2450 2.1103 13 6 -0.5131 -5.0285 1.7594 14 1 -0.2009 -5.6109 2.6263 15 6 -0.7743 -5.9486 0.5948 16 1 -1.7572 -5.9898 0.1492 17 6 0.2415 -6.7376 0.0982 18 7 1.4385 -6.6869 0.6406 19 14 -0.0821 -7.8775 -1.3459 20 1 0.1920 -7.1579 -2.6157 21 1 0.8049 -9.0644 -1.2481 22 1 -1.5006 -8.3164 -1.3219 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1264 -0.6445 1.2950 32 1 -0.2049 -1.3439 3.0938 33 1 -1.2233 -1.5281 1.6423 34 1 -0.8629 -3.5240 3.9214 35 1 -2.3532 -2.6666 3.4625 36 1 -2.5093 -4.9141 2.5709 37 1 -2.2048 -3.8200 1.1998 38 1 2.1533 -7.2418 0.2910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = 44.817369 kcal Electronic energy + Delta-G solvation = -19183.146314 eV Core-core repulsion = 16446.672483 eV Total energy + Delta-G solvation = -2736.473831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.75460 -37.96540 -37.52207 -35.37792 -33.27517 -31.45103 -30.70468 -28.07182 -27.41885 -26.99591 -24.19272 -23.31765 -22.20107 -20.67173 -20.08725 -18.52297 -17.37950 -17.14327 -16.50150 -15.93840 -15.68831 -15.11509 -14.92127 -14.56090 -14.53812 -14.39358 -13.60536 -13.35231 -13.26055 -13.00124 -12.80710 -12.72069 -12.36590 -12.15079 -11.98689 -11.93219 -11.77848 -11.62567 -11.58180 -11.48337 -11.16607 -10.64897 -10.52368 -10.27975 -9.40991 -7.97635 -6.15498 1.35182 1.41029 1.41807 1.50679 2.01387 2.42259 2.56878 3.31619 3.57709 3.72330 3.90194 3.96461 4.00513 4.13996 4.24426 4.34840 4.46091 4.48345 4.63528 4.70213 4.75750 4.80521 4.90195 5.01994 5.02025 5.04982 5.05775 5.21470 5.26785 5.34215 5.43473 5.48535 5.56363 5.60899 5.74059 5.92092 6.23086 6.53596 6.89150 7.52109 8.48626 9.03129 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.025067 B = 0.007726 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.742084 B = 3623.036931 C = 4136.574838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.135 4.135 4 C -0.014 4.014 5 C 0.153 3.847 6 N -0.384 5.384 7 N -0.284 5.284 8 C 0.201 3.799 9 N -0.481 5.481 10 C 0.098 3.902 11 C -0.127 4.127 12 C -0.108 4.108 13 C 0.120 3.880 14 H 0.017 0.983 15 C -0.560 4.560 16 H 0.060 0.940 17 C 0.026 3.974 18 N -0.848 5.848 19 Si 0.946 3.054 20 H -0.292 1.292 21 H -0.284 1.284 22 H -0.258 1.258 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 17.060 4.881 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.192 4.192 4 C -0.054 4.054 5 C -0.116 4.116 6 N -0.225 5.225 7 N -0.119 5.119 8 C -0.068 4.068 9 N -0.174 5.174 10 C -0.024 4.024 11 C -0.164 4.164 12 C -0.146 4.146 13 C 0.099 3.901 14 H 0.034 0.966 15 C -0.598 4.598 16 H 0.079 0.921 17 C -0.180 4.180 18 N -0.481 5.481 19 Si 0.772 3.228 20 H -0.219 1.219 21 H -0.209 1.209 22 H -0.182 1.182 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.454 16.247 4.202 17.362 hybrid contribution -0.539 -0.708 -0.509 1.025 sum -4.994 15.538 3.693 16.734 Atomic orbital electron populations 1.21976 0.94811 1.00419 1.03288 1.21070 0.96418 0.97278 0.96139 1.21750 1.01261 0.93139 1.03082 1.20190 1.02450 0.82344 1.00368 1.25096 0.86358 0.99335 1.00769 1.74452 1.28317 0.96725 1.22958 1.74638 1.04990 1.15309 1.16987 1.26258 0.97947 0.83881 0.98740 1.46459 1.17718 1.08307 1.44896 1.22354 0.86597 0.96366 0.97042 1.21945 1.01319 0.95403 0.97740 1.21613 0.96973 0.97226 0.98792 1.17423 0.87401 0.89396 0.95892 0.96556 1.21064 0.96912 1.23834 1.17959 0.92133 1.25718 0.94896 0.98302 0.99094 1.70210 1.01213 1.36210 1.40487 0.85766 0.78539 0.78624 0.79869 1.21879 1.20916 1.18248 0.89868 0.91842 0.95614 0.93950 0.92274 0.91835 0.90564 0.87586 0.89083 0.86615 0.88350 0.91977 0.85688 0.90182 0.92807 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 7.90 71.98 0.57 -2.70 16 2 C -0.09 -2.14 2.91 -10.79 -0.03 -2.17 16 3 C -0.14 -2.19 9.19 71.98 0.66 -1.52 16 4 C -0.01 -0.38 5.10 29.85 0.15 -0.22 16 5 C 0.15 6.21 6.51 138.14 0.90 7.11 16 6 N -0.38 -20.42 12.23 -50.46 -0.62 -21.04 16 7 N -0.28 -16.96 9.26 -50.28 -0.47 -17.42 16 8 C 0.20 10.44 6.88 138.14 0.95 11.39 16 9 N -0.48 -19.15 2.72 -504.65 -1.37 -20.52 16 10 C 0.10 2.56 5.94 86.53 0.51 3.08 16 11 C -0.13 -3.32 5.94 30.75 0.18 -3.13 16 12 C -0.11 -3.92 5.25 30.72 0.16 -3.75 16 13 C 0.12 6.07 2.48 -12.18 -0.03 6.04 16 14 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 15 C -0.56 -31.70 8.57 25.60 0.22 -31.48 16 16 H 0.06 3.31 7.76 -2.91 -0.02 3.28 16 17 C 0.03 1.54 5.13 84.65 0.43 1.98 16 18 N -0.85 -53.43 10.56 21.45 0.23 -53.20 16 19 Si 0.95 46.71 29.54 68.60 2.03 48.73 16 20 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 21 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 H 0.08 1.32 8.11 -2.39 -0.02 1.30 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.02 0.73 5.49 -2.38 -0.01 0.72 16 26 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 2.08 7.75 -2.39 -0.02 2.06 16 31 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.12 2.17 7.84 -2.39 -0.02 2.15 16 33 H 0.10 2.23 6.21 -2.39 -0.01 2.22 16 34 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 35 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.08 2.65 8.14 -2.38 -0.02 2.64 16 37 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 38 H 0.25 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -79.03 298.38 5.51 -73.52 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.03 Total: 5.33 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 4.68 Total: -15.40 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -2.23 Total: -112.19 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -79.03 5.51 -73.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.340 kcal (2) G-P(sol) polarization free energy of solvation -79.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds