Wall clock time and date at job start Mon Mar 30 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47240 * 2 1 4 4 C 1.52997 * 109.47335 * 120.00162 * 2 1 3 5 5 C 1.50694 * 109.47358 * 174.99808 * 4 2 1 6 6 N 1.31032 * 126.47799 * 269.81407 * 5 4 2 7 7 N 1.28916 * 109.72073 * 180.02562 * 6 5 4 8 8 C 1.29833 * 109.47894 * 0.07175 * 7 6 5 9 9 N 1.34698 * 126.46620 * 89.99927 * 5 4 2 10 10 C 1.46256 * 128.84398 * 0.05959 * 9 5 4 11 11 C 1.53320 * 108.72847 * 162.91849 * 10 9 5 12 12 C 1.53132 * 109.58711 * 50.28360 * 11 10 9 13 13 C 1.50798 * 128.52089 * 180.09172 * 8 7 6 14 14 H 1.08999 * 109.73277 * 283.77208 * 13 8 7 15 15 C 1.50701 * 109.73537 * 44.41014 * 13 8 7 16 16 H 1.08002 * 119.99761 * 119.35554 * 15 13 8 17 17 C 1.37871 * 119.99694 * 299.64117 * 15 13 8 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 H 1.09001 * 109.47163 * 300.00274 * 1 2 3 24 24 H 1.09004 * 109.47328 * 59.99422 * 1 2 3 25 25 H 1.08990 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47343 * 240.00249 * 2 1 3 27 27 H 1.09005 * 109.47324 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47513 * 299.99828 * 3 2 1 29 29 H 1.09005 * 109.46846 * 60.00415 * 3 2 1 30 30 H 1.09009 * 109.46806 * 54.99922 * 4 2 1 31 31 H 1.08999 * 109.47218 * 294.99846 * 4 2 1 32 32 H 1.08998 * 109.59667 * 43.14559 * 10 9 5 33 33 H 1.08996 * 109.71679 * 282.76466 * 10 9 5 34 34 H 1.09004 * 109.45101 * 290.24492 * 11 10 9 35 35 H 1.09000 * 109.44921 * 170.32280 * 11 10 9 36 36 H 1.08997 * 109.49959 * 170.62173 * 12 11 10 37 37 H 1.09003 * 109.52746 * 50.54461 * 12 11 10 38 38 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.8294 1.1888 6 7 4.2316 -1.8113 0.6623 7 7 5.4924 -1.5735 0.7881 8 6 5.6604 -0.4392 1.3969 9 7 4.4287 0.0634 1.6690 10 6 4.1754 1.3305 2.3540 11 6 5.4580 1.7672 3.0717 12 6 6.6364 1.7131 2.0954 13 6 6.9519 0.2485 1.7620 14 1 7.3961 -0.2394 2.6297 15 6 7.9079 0.1866 0.5988 16 1 8.2671 1.0989 0.1459 17 6 8.3194 -1.0347 0.1090 18 7 7.8821 -2.1457 0.6605 19 14 9.4984 -1.1115 -1.3379 20 1 10.8965 -1.1206 -0.8373 21 1 9.2443 -2.3491 -2.1184 22 1 9.2920 0.0738 -2.2082 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6053 -1.7199 1.2950 31 1 1.7517 -0.1584 2.1369 32 1 3.3756 1.1987 3.0827 33 1 3.8864 2.0899 1.6275 34 1 5.6504 1.0980 3.9104 35 1 5.3386 2.7859 3.4407 36 1 7.5095 2.1782 2.5529 37 1 6.3769 2.2471 1.1812 38 1 8.1714 -3.0049 0.3157 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261078123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:25 Heat of formation + Delta-G solvation = 63.632508 kcal Electronic energy + Delta-G solvation = -19179.670098 eV Core-core repulsion = 16444.012153 eV Total energy + Delta-G solvation = -2735.657945 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.02230 -36.42068 -36.37759 -33.54492 -31.46338 -29.88114 -29.13511 -27.15824 -25.97905 -25.18733 -22.45045 -21.69858 -20.85628 -19.33875 -18.53723 -16.56861 -15.86804 -15.59435 -14.78617 -14.49420 -14.24200 -13.74410 -13.46353 -13.30826 -13.12041 -12.70641 -12.43054 -12.21173 -11.80461 -11.60084 -11.55454 -10.87383 -10.86739 -10.82843 -10.60645 -10.53746 -10.46312 -10.22715 -9.93227 -9.63857 -9.31153 -8.97796 -8.74794 -8.21693 -7.55410 -5.83373 -3.96238 3.00062 3.38941 3.47498 3.49020 3.51197 4.34599 4.56272 4.85683 4.92659 4.99334 5.02844 5.13709 5.30468 5.42833 5.45399 5.52504 5.62269 5.70867 5.73694 5.82953 5.88913 5.95151 5.96721 6.03559 6.15739 6.18172 6.34920 6.41306 6.42475 6.52631 6.71830 7.07218 7.18126 7.49570 7.55404 7.97930 8.13094 8.33175 9.00117 9.68982 10.27993 11.19393 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.007715 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.374258 B = 3628.315980 C = 4138.686532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.015 4.015 5 C 0.125 3.875 6 N -0.323 5.323 7 N -0.227 5.227 8 C 0.223 3.777 9 N -0.487 5.487 10 C 0.110 3.890 11 C -0.136 4.136 12 C -0.114 4.114 13 C 0.127 3.873 14 H 0.051 0.949 15 C -0.547 4.547 16 H 0.060 0.940 17 C 0.078 3.922 18 N -0.818 5.818 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.277 1.277 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.795 8.357 3.804 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.055 4.055 5 C -0.141 4.141 6 N -0.165 5.165 7 N -0.063 5.063 8 C -0.043 4.043 9 N -0.181 5.181 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.153 4.153 13 C 0.107 3.893 14 H 0.068 0.932 15 C -0.585 4.585 16 H 0.078 0.922 17 C -0.132 4.132 18 N -0.450 5.450 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.484 6.783 3.105 13.694 hybrid contribution 0.201 1.107 -0.214 1.145 sum -11.283 7.890 2.891 14.068 Atomic orbital electron populations 1.21815 0.94998 1.01766 1.01512 1.21112 0.95218 0.96266 0.98598 1.21996 1.01706 0.95920 1.01200 1.19851 0.85867 1.01860 0.97873 1.24158 0.94412 0.90856 1.04640 1.74677 1.00334 1.21839 1.19639 1.74776 1.04223 1.12253 1.14999 1.26545 0.87112 0.92759 0.97899 1.46319 1.07768 1.18354 1.45690 1.21803 0.99074 0.84402 0.96107 1.21958 0.94722 1.01300 0.99358 1.21768 0.96142 0.99726 0.97645 1.17507 0.85791 0.87781 0.98255 0.93173 1.20660 1.27862 0.92712 1.17288 0.92216 1.24954 0.95776 0.95857 0.96632 1.70008 1.38600 0.97246 1.39124 0.86675 0.81131 0.77545 0.83048 1.20766 1.21184 1.20197 0.92846 0.92719 0.92509 0.90487 0.92245 0.92830 0.92955 0.89486 0.91395 0.90662 0.90437 0.91314 0.90735 0.91413 0.92388 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.19 37.15 0.34 -1.10 16 2 C -0.09 -1.22 2.91 -90.62 -0.26 -1.48 16 3 C -0.15 -1.92 7.87 37.16 0.29 -1.63 16 4 C -0.01 -0.22 5.09 -27.89 -0.14 -0.36 16 5 C 0.13 2.58 6.52 -155.29 -1.01 1.57 16 6 N -0.32 -8.28 12.24 32.73 0.40 -7.88 16 7 N -0.23 -6.45 9.32 32.77 0.31 -6.15 16 8 C 0.22 5.65 6.88 -155.25 -1.07 4.58 16 9 N -0.49 -9.94 2.72 -110.80 -0.30 -10.24 16 10 C 0.11 1.66 5.92 -4.01 -0.02 1.64 16 11 C -0.14 -2.02 5.94 -26.50 -0.16 -2.17 16 12 C -0.11 -2.15 5.23 -26.41 -0.14 -2.29 16 13 C 0.13 3.14 2.50 -92.62 -0.23 2.91 16 14 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.55 -15.02 8.54 -34.44 -0.29 -15.32 16 16 H 0.06 1.60 7.75 -52.49 -0.41 1.20 16 17 C 0.08 2.20 5.13 -17.82 -0.09 2.11 16 18 N -0.82 -24.42 10.62 55.43 0.59 -23.83 16 19 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 0.93 5.46 -51.93 -0.28 0.65 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.07 0.85 7.76 -51.93 -0.40 0.45 16 32 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 33 H 0.08 1.06 6.17 -51.93 -0.32 0.74 16 34 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 298.37 15.07 4.50 4.50 Total: -1.00 -32.99 298.37 -8.34 -41.34 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -6.02 Total: -3.15 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.79 Total: -11.56 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.99 Total: -48.10 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.99 -8.34 -41.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.968 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds