Wall clock time and date at job start Mon Mar 30 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47240 * 2 1 4 4 C 1.52997 * 109.47335 * 120.00162 * 2 1 3 5 5 C 1.50694 * 109.47358 * 174.99808 * 4 2 1 6 6 N 1.31032 * 126.47799 * 269.81407 * 5 4 2 7 7 N 1.28916 * 109.72073 * 180.02562 * 6 5 4 8 8 C 1.29833 * 109.47894 * 0.07175 * 7 6 5 9 9 N 1.34698 * 126.46620 * 89.99927 * 5 4 2 10 10 C 1.46256 * 128.84398 * 0.05959 * 9 5 4 11 11 C 1.53320 * 108.72847 * 162.91849 * 10 9 5 12 12 C 1.53132 * 109.58711 * 50.28360 * 11 10 9 13 13 C 1.50798 * 128.52089 * 180.09172 * 8 7 6 14 14 H 1.08999 * 109.73277 * 283.77208 * 13 8 7 15 15 C 1.50701 * 109.73537 * 44.41014 * 13 8 7 16 16 H 1.08002 * 119.99761 * 119.35554 * 15 13 8 17 17 C 1.37871 * 119.99694 * 299.64117 * 15 13 8 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 H 1.09001 * 109.47163 * 300.00274 * 1 2 3 24 24 H 1.09004 * 109.47328 * 59.99422 * 1 2 3 25 25 H 1.08990 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47343 * 240.00249 * 2 1 3 27 27 H 1.09005 * 109.47324 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47513 * 299.99828 * 3 2 1 29 29 H 1.09005 * 109.46846 * 60.00415 * 3 2 1 30 30 H 1.09009 * 109.46806 * 54.99922 * 4 2 1 31 31 H 1.08999 * 109.47218 * 294.99846 * 4 2 1 32 32 H 1.08998 * 109.59667 * 43.14559 * 10 9 5 33 33 H 1.08996 * 109.71679 * 282.76466 * 10 9 5 34 34 H 1.09004 * 109.45101 * 290.24492 * 11 10 9 35 35 H 1.09000 * 109.44921 * 170.32280 * 11 10 9 36 36 H 1.08997 * 109.49959 * 170.62173 * 12 11 10 37 37 H 1.09003 * 109.52746 * 50.54461 * 12 11 10 38 38 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.8294 1.1888 6 7 4.2316 -1.8113 0.6623 7 7 5.4924 -1.5735 0.7881 8 6 5.6604 -0.4392 1.3969 9 7 4.4287 0.0634 1.6690 10 6 4.1754 1.3305 2.3540 11 6 5.4580 1.7672 3.0717 12 6 6.6364 1.7131 2.0954 13 6 6.9519 0.2485 1.7620 14 1 7.3961 -0.2394 2.6297 15 6 7.9079 0.1866 0.5988 16 1 8.2671 1.0989 0.1459 17 6 8.3194 -1.0347 0.1090 18 7 7.8821 -2.1457 0.6605 19 14 9.4984 -1.1115 -1.3379 20 1 10.8965 -1.1206 -0.8373 21 1 9.2443 -2.3491 -2.1184 22 1 9.2920 0.0738 -2.2082 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6053 -1.7199 1.2950 31 1 1.7517 -0.1584 2.1369 32 1 3.3756 1.1987 3.0827 33 1 3.8864 2.0899 1.6275 34 1 5.6504 1.0980 3.9104 35 1 5.3386 2.7859 3.4407 36 1 7.5095 2.1782 2.5529 37 1 6.3769 2.2471 1.1812 38 1 8.1714 -3.0049 0.3157 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:25 Heat of formation + Delta-G solvation = 43.952998 kcal Electronic energy + Delta-G solvation = -19180.523466 eV Core-core repulsion = 16444.012153 eV Total energy + Delta-G solvation = -2736.511313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.73661 -37.95396 -37.52442 -35.37499 -33.27440 -31.44179 -30.70188 -28.07377 -27.41775 -26.98857 -24.18957 -23.31513 -22.20194 -20.67164 -20.09153 -18.52189 -17.37732 -17.13705 -16.50163 -15.93916 -15.68613 -15.11302 -14.92027 -14.55651 -14.53502 -14.39208 -13.60611 -13.35638 -13.26379 -12.99225 -12.76647 -12.72022 -12.40931 -12.14825 -11.98647 -11.93019 -11.77925 -11.62998 -11.58563 -11.48888 -11.15704 -10.64936 -10.52385 -10.27995 -9.40829 -7.98186 -6.15650 1.34398 1.40859 1.42387 1.50334 2.01060 2.42042 2.56449 3.31574 3.57647 3.72346 3.90227 3.96741 4.00506 4.13846 4.24488 4.34925 4.46131 4.48393 4.63760 4.70060 4.75533 4.80561 4.90241 5.01997 5.02065 5.04762 5.05964 5.21433 5.26876 5.34277 5.43319 5.48617 5.56048 5.60955 5.74275 5.91650 6.23019 6.53327 6.89128 7.52177 8.47889 9.03056 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.007715 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.374258 B = 3628.315980 C = 4138.686532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.014 4.014 5 C 0.153 3.847 6 N -0.384 5.384 7 N -0.285 5.285 8 C 0.201 3.799 9 N -0.480 5.480 10 C 0.098 3.902 11 C -0.127 4.127 12 C -0.107 4.107 13 C 0.119 3.881 14 H 0.018 0.982 15 C -0.560 4.560 16 H 0.060 0.940 17 C 0.027 3.973 18 N -0.850 5.850 19 Si 0.945 3.055 20 H -0.267 1.267 21 H -0.295 1.295 22 H -0.271 1.271 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.214 11.192 4.796 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.054 4.054 5 C -0.116 4.116 6 N -0.224 5.224 7 N -0.120 5.120 8 C -0.068 4.068 9 N -0.173 5.173 10 C -0.024 4.024 11 C -0.164 4.164 12 C -0.145 4.145 13 C 0.098 3.902 14 H 0.036 0.964 15 C -0.598 4.598 16 H 0.078 0.922 17 C -0.179 4.179 18 N -0.483 5.483 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.222 1.222 22 H -0.196 1.196 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.900 9.657 4.111 17.418 hybrid contribution 0.867 0.273 -0.496 1.035 sum -13.033 9.930 3.615 16.779 Atomic orbital electron populations 1.21748 0.91892 1.02516 1.03083 1.21068 0.97634 0.96056 0.96137 1.21983 0.99455 0.95792 1.03292 1.20189 0.81551 1.03243 1.00373 1.25149 0.96587 0.88982 1.00849 1.74524 1.00059 1.24881 1.22979 1.74610 1.06036 1.14468 1.16924 1.26269 0.88922 0.92831 0.98788 1.46460 1.05971 1.19745 1.45145 1.22349 1.00470 0.82345 0.97204 1.21951 0.92601 1.04124 0.97773 1.21653 0.98757 0.95309 0.98808 1.17479 0.85376 0.91359 0.95962 0.96386 1.21079 1.28274 0.92458 1.17963 0.92173 1.25715 0.97350 0.95803 0.99079 1.70197 1.40166 0.97309 1.40585 0.85770 0.79913 0.76984 0.80173 1.19206 1.22191 1.19613 0.90573 0.91833 0.92276 0.93927 0.95582 0.91836 0.89870 0.89077 0.87586 0.86640 0.88312 0.91963 0.85718 0.90194 0.92789 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 2 C -0.09 -2.13 2.91 -10.80 -0.03 -2.16 16 3 C -0.15 -3.26 7.87 71.98 0.57 -2.69 16 4 C -0.01 -0.38 5.09 29.85 0.15 -0.22 16 5 C 0.15 6.19 6.52 138.08 0.90 7.09 16 6 N -0.38 -20.38 12.24 -50.37 -0.62 -21.00 16 7 N -0.29 -17.01 9.32 -50.24 -0.47 -17.47 16 8 C 0.20 10.44 6.88 138.12 0.95 11.39 16 9 N -0.48 -19.10 2.72 -504.47 -1.37 -20.47 16 10 C 0.10 2.55 5.92 86.53 0.51 3.07 16 11 C -0.13 -3.32 5.94 30.75 0.18 -3.14 16 12 C -0.11 -3.89 5.23 30.80 0.16 -3.73 16 13 C 0.12 6.03 2.50 -12.09 -0.03 6.00 16 14 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 15 C -0.56 -31.69 8.54 25.60 0.22 -31.47 16 16 H 0.06 3.29 7.75 -2.91 -0.02 3.26 16 17 C 0.03 1.57 5.13 84.65 0.43 2.01 16 18 N -0.85 -53.50 10.62 21.45 0.23 -53.28 16 19 Si 0.95 46.70 29.54 68.60 2.03 48.73 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 22 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 23 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.03 0.74 5.46 -2.38 -0.01 0.73 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.32 8.10 -2.38 -0.02 1.30 16 30 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.11 2.08 7.76 -2.39 -0.02 2.06 16 32 H 0.12 2.16 7.85 -2.39 -0.02 2.14 16 33 H 0.10 2.24 6.17 -2.39 -0.01 2.22 16 34 H 0.06 1.74 8.12 -2.38 -0.02 1.72 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.05 1.98 8.08 -2.39 -0.02 1.97 16 38 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -78.97 298.37 5.51 -73.47 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.03 Total: 5.41 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 4.68 Total: -15.38 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -2.23 Total: -112.22 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -78.97 5.51 -73.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.420 kcal (2) G-P(sol) polarization free energy of solvation -78.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds