Wall clock time and date at job start Mon Mar 30 2020 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47017 * 239.99727 * 3 2 1 5 5 H 1.48503 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47524 * 119.99962 * 3 2 1 7 7 C 1.37876 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.52996 * 115.55212 * 182.52169 * 9 7 2 11 11 N 1.46902 * 109.47088 * 27.21829 * 10 9 7 12 12 C 1.48678 * 111.00154 * 184.90371 * 11 10 9 13 13 C 1.54979 * 103.31754 * 200.94390 * 12 11 10 14 14 C 1.54745 * 102.94062 * 37.07992 * 13 12 11 15 15 C 1.47296 * 110.99712 * 67.69240 * 11 10 9 16 16 C 1.53703 * 110.41476 * 265.87555 * 15 11 10 17 17 C 1.55029 * 104.05308 * 97.31248 * 16 15 11 18 18 C 1.54939 * 102.82222 * 37.45610 * 17 16 15 19 19 C 1.53318 * 110.62070 * 24.36261 * 15 11 10 20 20 C 1.53002 * 117.51856 * 328.22126 * 9 7 2 21 21 C 1.52999 * 60.00068 * 107.47776 * 20 9 7 22 22 H 0.97003 * 120.00182 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47212 * 267.21811 * 10 9 7 24 24 H 1.09002 * 109.47546 * 147.21968 * 10 9 7 25 25 H 1.08999 * 110.64994 * 319.40159 * 12 11 10 26 26 H 1.09001 * 110.64813 * 82.48656 * 12 11 10 27 27 H 1.09003 * 110.72397 * 278.71926 * 13 12 11 28 28 H 1.08998 * 110.72618 * 155.44215 * 13 12 11 29 29 H 1.09003 * 110.35963 * 219.24013 * 14 13 12 30 30 H 1.09002 * 110.35535 * 96.94563 * 14 13 12 31 31 H 1.09001 * 110.51027 * 215.95112 * 16 15 11 32 32 H 1.08991 * 110.51582 * 338.66975 * 16 15 11 33 33 H 1.09003 * 110.73823 * 279.12180 * 17 16 15 34 34 H 1.08994 * 110.74293 * 155.79439 * 17 16 15 35 35 H 1.08997 * 110.48514 * 203.69889 * 18 17 16 36 36 H 1.08995 * 110.59208 * 81.11345 * 18 17 16 37 37 H 1.09000 * 110.07447 * 358.65018 * 19 15 11 38 38 H 1.09000 * 110.07138 * 120.13374 * 19 15 11 39 39 H 1.09001 * 117.50441 * 214.97070 * 20 9 7 40 40 H 1.09002 * 117.49708 * 359.97438 * 20 9 7 41 41 H 1.08994 * 117.50437 * 252.51113 * 21 20 9 42 42 H 1.09001 * 117.51599 * 107.47966 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.1155 -3.7601 0.0629 11 7 3.3834 -3.4523 0.7379 12 6 4.2987 -4.6236 0.7124 13 6 5.2808 -4.3347 1.8759 14 6 4.3700 -3.6848 2.9449 15 6 3.1632 -3.1504 2.1627 16 6 3.0177 -1.6348 2.3734 17 6 1.4850 -1.4051 2.4089 18 6 0.9674 -2.6549 3.1643 19 6 1.8677 -3.8032 2.6590 20 6 -0.1010 -2.5342 0.7169 21 6 -0.0430 -2.5685 -0.8116 22 1 -0.4850 0.8401 0.0004 23 1 2.3183 -4.1110 -0.9488 24 1 1.5876 -4.5359 0.6175 25 1 3.7476 -5.5462 0.8947 26 1 4.8318 -4.6743 -0.2370 27 1 6.0599 -3.6409 1.5598 28 1 5.7167 -5.2603 2.2517 29 1 4.8922 -2.8671 3.4417 30 1 4.0499 -4.4295 3.6737 31 1 3.4708 -1.3354 3.3184 32 1 3.4666 -1.0890 1.5436 33 1 1.0767 -1.3678 1.3989 34 1 1.2437 -0.4948 2.9578 35 1 -0.0752 -2.8485 2.9120 36 1 1.0810 -2.5266 4.2407 37 1 1.3773 -4.3307 1.8408 38 1 2.0853 -4.4950 3.4727 39 1 -0.3748 -3.4555 1.2310 40 1 -0.4457 -1.6132 1.1871 41 1 -0.3495 -1.6701 -1.3473 42 1 -0.2783 -3.5123 -1.3035 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309435231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:07 Heat of formation + Delta-G solvation = 118.203464 kcal Electronic energy + Delta-G solvation = -20998.630337 eV Core-core repulsion = 18368.879109 eV Total energy + Delta-G solvation = -2629.751228 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.51766 -36.88581 -34.20132 -32.18541 -30.89236 -28.35455 -28.00603 -25.69541 -24.38344 -22.88324 -21.11933 -20.61345 -19.39250 -19.23048 -17.65044 -15.84698 -15.56360 -14.95526 -14.77574 -14.46129 -13.48030 -13.41057 -13.20552 -12.43364 -12.23893 -12.00040 -11.64831 -11.51525 -11.26214 -10.90091 -10.77517 -10.76232 -10.58364 -10.43159 -10.20319 -10.03958 -10.01443 -9.62643 -9.53434 -9.26698 -9.24661 -8.82554 -8.23107 -7.99820 -7.52229 -7.39295 -5.92710 -3.82122 3.35337 3.39804 3.43866 4.44540 4.68534 5.07924 5.13449 5.19376 5.37725 5.61470 5.73220 5.84052 5.84605 5.92763 6.06382 6.14554 6.22264 6.26437 6.28718 6.38762 6.52063 6.53861 6.62025 6.66699 6.76717 6.79389 6.87194 6.92256 7.06878 7.11326 7.18869 7.25430 7.28236 7.49965 7.55266 7.68032 7.94774 8.03189 8.10570 8.20023 8.50558 8.73248 9.02352 9.56160 11.00891 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.011211 C = 0.010212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.263394 B = 2496.846580 C = 2741.114584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.044 3.956 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.017 3.983 10 C 0.078 3.922 11 N -0.480 5.480 12 C 0.028 3.972 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.106 3.894 16 C -0.095 4.095 17 C -0.195 4.195 18 C -0.120 4.120 19 C -0.159 4.159 20 C -0.192 4.192 21 C -0.198 4.198 22 H 0.260 0.740 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.093 0.907 33 H 0.221 0.779 34 H 0.020 0.980 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -6.683 3.621 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.155 4.155 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.474 4.474 8 H 0.105 0.895 9 C 0.017 3.983 10 C -0.049 4.049 11 N -0.203 5.203 12 C -0.101 4.101 13 C -0.160 4.160 14 C -0.161 4.161 15 C 0.017 3.983 16 C -0.133 4.133 17 C -0.229 4.229 18 C -0.157 4.157 19 C -0.197 4.197 20 C -0.229 4.229 21 C -0.237 4.237 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.236 0.764 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.146 0.854 41 H 0.124 0.876 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.042 -6.085 3.354 8.585 hybrid contribution 0.002 0.037 0.745 0.746 sum 5.045 -6.048 4.098 8.878 Atomic orbital electron populations 1.69979 1.05468 1.26210 1.51149 1.24955 0.95065 0.98953 0.96512 0.86686 0.79695 0.83317 0.78838 1.20302 1.21531 1.19955 1.20540 0.94094 0.87668 1.45118 0.89497 1.19152 0.85573 0.92968 1.00636 1.22034 0.89661 0.96728 0.96495 1.64855 1.12463 1.31293 1.11695 1.23266 0.95159 0.93070 0.98558 1.22471 0.97897 0.99794 0.95818 1.22617 0.96469 0.99665 0.97373 1.21795 0.92251 0.97153 0.87112 1.22503 0.98656 0.93069 0.99022 1.25175 0.95184 0.92555 1.09983 1.22465 0.98832 0.97281 0.97156 1.23102 0.97706 0.98533 1.00332 1.23483 1.04830 1.00638 0.93945 1.22977 1.06316 0.99459 0.94928 0.92948 0.92475 0.94746 0.94951 0.90850 0.91145 0.92194 0.91528 0.92346 0.95775 0.88889 0.76379 0.96104 0.92231 0.95264 0.89454 0.94122 0.93752 0.85366 0.87576 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.19 8.50 55.43 0.47 -22.72 16 2 C 0.04 1.13 3.85 -17.82 -0.07 1.06 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.44 -10.88 4.73 -34.44 -0.16 -11.04 16 8 H 0.09 2.23 5.31 -52.49 -0.28 1.95 16 9 C 0.02 0.40 1.32 -155.66 -0.21 0.20 16 10 C 0.08 1.60 4.61 -3.82 -0.02 1.58 16 11 N -0.48 -9.32 3.88 -215.03 -0.83 -10.15 16 12 C 0.03 0.44 6.57 -1.79 -0.01 0.43 16 13 C -0.12 -1.75 7.07 -24.77 -0.18 -1.93 16 14 C -0.12 -1.97 6.21 -25.59 -0.16 -2.13 16 15 C 0.11 2.02 0.76 -130.63 -0.10 1.92 16 16 C -0.10 -2.03 5.21 -25.29 -0.13 -2.16 16 17 C -0.19 -4.42 4.20 -24.64 -0.10 -4.52 16 18 C -0.12 -2.42 5.80 -24.96 -0.14 -2.57 16 19 C -0.16 -3.00 5.36 -25.82 -0.14 -3.14 16 20 C -0.19 -4.44 5.03 -26.73 -0.13 -4.57 16 21 C -0.20 -4.70 9.39 -26.73 -0.25 -4.95 16 22 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 23 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 24 H 0.04 0.69 4.95 -51.93 -0.26 0.43 16 25 H 0.03 0.50 8.01 -51.93 -0.42 0.08 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.05 7.35 -51.93 -0.38 0.66 16 30 H 0.06 0.87 7.11 -51.93 -0.37 0.50 16 31 H 0.02 0.48 7.49 -51.93 -0.39 0.09 16 32 H 0.09 2.17 5.12 -51.93 -0.27 1.90 16 33 H 0.22 5.23 0.08 -78.46 -0.01 5.22 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.21 5.76 -51.93 -0.30 0.91 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.71 3.09 -51.93 -0.16 1.55 16 38 H 0.04 0.70 7.10 -51.93 -0.37 0.33 16 39 H 0.04 0.97 6.00 -51.93 -0.31 0.65 16 40 H 0.13 3.26 4.72 -51.93 -0.25 3.02 16 41 H 0.11 2.77 6.50 -51.93 -0.34 2.43 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 277.24 15.07 4.18 4.18 Total: -1.00 -25.14 277.24 -9.19 -34.33 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.18 Total: 10.55 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: -1.80 Total: -31.81 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: -0.36 Total: -32.87 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -25.14 -9.19 -34.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309435231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.537 kcal (2) G-P(sol) polarization free energy of solvation -25.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds