Wall clock time and date at job start Mon Mar 30 2020 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47017 * 239.99727 * 3 2 1 5 5 H 1.48503 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47524 * 119.99962 * 3 2 1 7 7 C 1.37876 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.52996 * 115.55212 * 182.52169 * 9 7 2 11 11 N 1.46902 * 109.47088 * 27.21829 * 10 9 7 12 12 C 1.48678 * 111.00154 * 184.90371 * 11 10 9 13 13 C 1.54979 * 103.31754 * 200.94390 * 12 11 10 14 14 C 1.54745 * 102.94062 * 37.07992 * 13 12 11 15 15 C 1.47296 * 110.99712 * 67.69240 * 11 10 9 16 16 C 1.53703 * 110.41476 * 265.87555 * 15 11 10 17 17 C 1.55029 * 104.05308 * 97.31248 * 16 15 11 18 18 C 1.54939 * 102.82222 * 37.45610 * 17 16 15 19 19 C 1.53318 * 110.62070 * 24.36261 * 15 11 10 20 20 C 1.53002 * 117.51856 * 328.22126 * 9 7 2 21 21 C 1.52999 * 60.00068 * 107.47776 * 20 9 7 22 22 H 0.97003 * 120.00182 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47212 * 267.21811 * 10 9 7 24 24 H 1.09002 * 109.47546 * 147.21968 * 10 9 7 25 25 H 1.08999 * 110.64994 * 319.40159 * 12 11 10 26 26 H 1.09001 * 110.64813 * 82.48656 * 12 11 10 27 27 H 1.09003 * 110.72397 * 278.71926 * 13 12 11 28 28 H 1.08998 * 110.72618 * 155.44215 * 13 12 11 29 29 H 1.09003 * 110.35963 * 219.24013 * 14 13 12 30 30 H 1.09002 * 110.35535 * 96.94563 * 14 13 12 31 31 H 1.09001 * 110.51027 * 215.95112 * 16 15 11 32 32 H 1.08991 * 110.51582 * 338.66975 * 16 15 11 33 33 H 1.09003 * 110.73823 * 279.12180 * 17 16 15 34 34 H 1.08994 * 110.74293 * 155.79439 * 17 16 15 35 35 H 1.08997 * 110.48514 * 203.69889 * 18 17 16 36 36 H 1.08995 * 110.59208 * 81.11345 * 18 17 16 37 37 H 1.09000 * 110.07447 * 358.65018 * 19 15 11 38 38 H 1.09000 * 110.07138 * 120.13374 * 19 15 11 39 39 H 1.09001 * 117.50441 * 214.97070 * 20 9 7 40 40 H 1.09002 * 117.49708 * 359.97438 * 20 9 7 41 41 H 1.08994 * 117.50437 * 252.51113 * 21 20 9 42 42 H 1.09001 * 117.51599 * 107.47966 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.1155 -3.7601 0.0629 11 7 3.3834 -3.4523 0.7379 12 6 4.2987 -4.6236 0.7124 13 6 5.2808 -4.3347 1.8759 14 6 4.3700 -3.6848 2.9449 15 6 3.1632 -3.1504 2.1627 16 6 3.0177 -1.6348 2.3734 17 6 1.4850 -1.4051 2.4089 18 6 0.9674 -2.6549 3.1643 19 6 1.8677 -3.8032 2.6590 20 6 -0.1010 -2.5342 0.7169 21 6 -0.0430 -2.5685 -0.8116 22 1 -0.4850 0.8401 0.0004 23 1 2.3183 -4.1110 -0.9488 24 1 1.5876 -4.5359 0.6175 25 1 3.7476 -5.5462 0.8947 26 1 4.8318 -4.6743 -0.2370 27 1 6.0599 -3.6409 1.5598 28 1 5.7167 -5.2603 2.2517 29 1 4.8922 -2.8671 3.4417 30 1 4.0499 -4.4295 3.6737 31 1 3.4708 -1.3354 3.3184 32 1 3.4666 -1.0890 1.5436 33 1 1.0767 -1.3678 1.3989 34 1 1.2437 -0.4948 2.9578 35 1 -0.0752 -2.8485 2.9120 36 1 1.0810 -2.5266 4.2407 37 1 1.3773 -4.3307 1.8408 38 1 2.0853 -4.4950 3.4727 39 1 -0.3748 -3.4555 1.2310 40 1 -0.4457 -1.6132 1.1871 41 1 -0.3495 -1.6701 -1.3473 42 1 -0.2783 -3.5123 -1.3035 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309435231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:07 Heat of formation + Delta-G solvation = 106.026040 kcal Electronic energy + Delta-G solvation = -20999.158390 eV Core-core repulsion = 18368.879109 eV Total energy + Delta-G solvation = -2630.279280 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.09724 -38.51461 -35.78678 -33.95919 -32.43050 -30.00422 -29.48766 -27.44150 -26.04355 -24.37484 -22.86773 -21.90583 -21.09718 -21.00770 -19.24112 -17.65555 -17.18652 -16.56943 -16.26578 -15.92728 -15.32057 -15.08297 -14.70071 -14.16021 -13.61706 -13.48641 -13.31156 -13.13087 -12.81981 -12.63581 -12.55307 -12.37580 -12.16523 -11.97704 -11.89824 -11.64372 -11.52038 -11.27268 -11.10839 -10.99910 -10.82833 -10.63982 -10.07464 -9.91421 -9.33088 -8.86058 -7.89471 -5.80678 1.44667 1.47428 1.51861 2.50980 3.12157 3.32068 3.83201 3.85615 4.00010 4.04003 4.25901 4.32117 4.44099 4.56968 4.62595 4.74056 4.74814 4.82620 4.86359 5.01303 5.01869 5.02964 5.10226 5.17330 5.21448 5.22915 5.32630 5.35026 5.38773 5.41637 5.46474 5.51556 5.60604 5.73281 5.80904 5.87254 6.09440 6.28245 6.45669 6.50198 6.67543 6.90631 7.04463 7.58902 9.02053 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.011211 C = 0.010212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.263394 B = 2496.846580 C = 2741.114584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.011 3.989 3 Si 0.923 3.077 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.431 4.431 8 H 0.079 0.921 9 C 0.014 3.986 10 C 0.083 3.917 11 N -0.501 5.501 12 C 0.026 3.974 13 C -0.113 4.113 14 C -0.122 4.122 15 C 0.106 3.894 16 C -0.095 4.095 17 C -0.206 4.206 18 C -0.116 4.116 19 C -0.153 4.153 20 C -0.179 4.179 21 C -0.206 4.206 22 H 0.254 0.746 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.212 0.788 34 H -0.006 1.006 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.377 -8.819 4.338 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.186 4.186 3 Si 0.751 3.249 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.097 0.903 9 C 0.014 3.986 10 C -0.044 4.044 11 N -0.224 5.224 12 C -0.101 4.101 13 C -0.151 4.151 14 C -0.160 4.160 15 C 0.016 3.984 16 C -0.133 4.133 17 C -0.241 4.241 18 C -0.154 4.154 19 C -0.191 4.191 20 C -0.216 4.216 21 C -0.244 4.244 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.227 0.773 34 H 0.013 0.987 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.485 -8.225 4.066 11.236 hybrid contribution -0.449 0.744 0.519 1.012 sum 6.037 -7.481 4.585 10.650 Atomic orbital electron populations 1.70096 1.06123 1.26007 1.52331 1.25355 0.95469 1.00737 0.97009 0.86105 0.78805 0.81374 0.78582 1.20138 1.21940 1.20130 1.20634 0.93749 0.88591 1.43945 0.90326 1.19260 0.85734 0.93694 0.99937 1.21919 0.90017 0.95291 0.97182 1.64735 1.12240 1.33606 1.11864 1.23359 0.94821 0.92119 0.99801 1.22462 0.97150 1.01027 0.94468 1.22593 0.95428 1.00194 0.97777 1.21754 0.93815 0.95226 0.87612 1.22429 0.97304 0.95234 0.98310 1.25169 0.96615 0.92756 1.09574 1.22391 0.98781 0.96716 0.97494 1.23049 0.97118 0.98078 1.00851 1.23269 1.04848 1.00131 0.93379 1.22907 1.07180 0.99163 0.95187 0.93580 0.92162 0.93560 0.93743 0.90099 0.91273 0.89157 0.91542 0.90607 0.95181 0.91352 0.77265 0.98662 0.92829 0.94241 0.89906 0.91769 0.92165 0.87831 0.90395 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.57 8.50 21.45 0.18 -48.39 16 2 C 0.01 0.59 3.85 84.65 0.33 0.91 16 3 Si 0.92 43.11 29.54 68.60 2.03 45.13 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.43 -21.63 4.73 25.60 0.12 -21.51 16 8 H 0.08 4.06 5.31 -2.91 -0.02 4.04 16 9 C 0.01 0.66 1.32 -52.93 -0.07 0.59 16 10 C 0.08 3.24 4.61 86.30 0.40 3.64 16 11 N -0.50 -18.27 3.88 -834.22 -3.23 -21.51 16 12 C 0.03 0.75 6.57 86.64 0.57 1.32 16 13 C -0.11 -2.78 7.07 31.87 0.23 -2.55 16 14 C -0.12 -3.45 6.21 31.33 0.19 -3.26 16 15 C 0.11 3.75 0.76 3.94 0.00 3.75 16 16 C -0.10 -4.00 5.21 31.53 0.16 -3.84 16 17 C -0.21 -9.42 4.20 31.95 0.13 -9.28 16 18 C -0.12 -4.55 5.80 31.74 0.18 -4.37 16 19 C -0.15 -5.34 5.36 31.18 0.17 -5.17 16 20 C -0.18 -8.23 5.03 30.59 0.15 -8.07 16 21 C -0.21 -9.72 9.39 30.59 0.29 -9.43 16 22 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 23 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 24 H 0.05 1.71 4.95 -2.39 -0.01 1.70 16 25 H 0.04 1.16 8.01 -2.39 -0.02 1.15 16 26 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.88 7.35 -2.39 -0.02 1.86 16 30 H 0.08 1.90 7.11 -2.39 -0.02 1.88 16 31 H 0.03 1.18 7.49 -2.39 -0.02 1.17 16 32 H 0.07 3.20 5.12 -2.39 -0.01 3.18 16 33 H 0.21 10.12 0.08 -27.31 0.00 10.12 16 34 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.05 2.13 5.76 -2.39 -0.01 2.12 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 2.98 3.09 -2.39 -0.01 2.97 16 38 H 0.06 1.94 7.10 -2.39 -0.02 1.92 16 39 H 0.06 2.55 6.00 -2.39 -0.01 2.53 16 40 H 0.10 5.37 4.72 -2.39 -0.01 5.36 16 41 H 0.08 4.14 6.50 -2.39 -0.02 4.12 16 42 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -53.76 277.24 2.85 -50.91 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 1.02 Total: 31.12 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 2.86 Total: -57.26 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -3.05 Total: -69.90 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -53.76 2.85 -50.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309435231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.934 kcal (2) G-P(sol) polarization free energy of solvation -53.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds