Wall clock time and date at job start Mon Mar 30 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47104 * 2 1 4 4 C 1.36006 * 116.99734 * 180.02562 * 3 2 1 5 5 C 1.38719 * 119.98184 * 0.02562 * 4 3 2 6 6 C 1.38084 * 120.01817 * 179.75373 * 5 4 3 7 7 C 1.38886 * 119.98045 * 0.50585 * 6 5 4 8 8 N 1.39936 * 120.01900 * 179.74982 * 7 6 5 9 9 C 1.46500 * 120.00192 * 359.72254 * 8 7 6 10 10 H 1.09001 * 109.46968 * 325.00340 * 9 8 7 11 11 C 1.52999 * 109.47058 * 85.00423 * 9 8 7 12 12 C 1.50693 * 109.47311 * 205.00168 * 9 8 7 13 13 H 1.07996 * 120.00701 * 264.78135 * 12 9 8 14 14 C 1.37881 * 119.99724 * 84.78103 * 12 9 8 15 15 N 1.31515 * 120.00304 * 353.57035 * 14 12 9 16 16 Si 1.86800 * 120.00030 * 173.29626 * 14 12 9 17 17 H 1.48495 * 109.47644 * 89.99631 * 16 14 12 18 18 H 1.48497 * 109.47281 * 210.00062 * 16 14 12 19 19 H 1.48511 * 109.47119 * 329.99572 * 16 14 12 20 20 C 1.38838 * 119.96114 * 359.46965 * 7 6 5 21 21 C 1.38130 * 119.97789 * 0.27939 * 20 7 6 22 22 C 1.50703 * 119.99040 * 180.02562 * 21 20 7 23 23 H 1.08997 * 109.47402 * 59.99915 * 1 2 3 24 24 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46948 * 299.99849 * 1 2 3 26 26 H 1.09006 * 109.46923 * 239.99781 * 2 1 3 27 27 H 1.09005 * 109.47101 * 119.99999 * 2 1 3 28 28 H 1.08005 * 119.98880 * 0.02562 * 5 4 3 29 29 H 1.08005 * 120.01294 * 180.25998 * 6 5 4 30 30 H 0.97002 * 120.00011 * 179.72532 * 8 7 6 31 31 H 1.09005 * 109.46964 * 295.59037 * 11 9 8 32 32 H 1.08996 * 109.47145 * 55.58982 * 11 9 8 33 33 H 1.09001 * 109.47011 * 175.59380 * 11 9 8 34 34 H 0.96995 * 119.99630 * 359.77224 * 15 14 12 35 35 H 1.07998 * 120.01324 * 180.25511 * 20 7 6 36 36 H 1.09002 * 109.47537 * 89.99698 * 22 21 20 37 37 H 1.09003 * 109.47476 * 210.00572 * 22 21 20 38 38 H 1.08998 * 109.46891 * 329.99899 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.1993 0.4250 -0.0016 6 6 5.5683 0.6050 -0.0073 7 6 6.0997 1.8882 -0.0013 8 7 7.4870 2.0715 -0.0018 9 6 8.3794 0.9097 -0.0024 10 1 7.9333 0.1086 0.5869 11 6 8.5899 0.4291 -1.4396 12 6 9.7068 1.2955 0.5976 13 1 10.5228 1.5945 -0.0434 14 6 9.8794 1.2667 1.9653 15 7 8.8539 1.0262 2.7527 16 14 11.5716 1.5619 2.6995 17 1 11.7534 3.0131 2.9565 18 1 11.6945 0.8138 3.9764 19 1 12.6121 1.0933 1.7491 20 6 5.2536 2.9890 -0.0008 21 6 3.8843 2.8070 -0.0003 22 6 2.9657 4.0017 -0.0003 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7859 -0.5728 -0.0024 29 1 6.2259 -0.2518 -0.0124 30 1 7.8577 2.9678 -0.0017 31 1 7.6424 0.0765 -1.8473 32 1 8.9627 1.2535 -2.0475 33 1 9.3144 -0.3852 -1.4480 34 1 7.9754 0.8722 2.3715 35 1 5.6658 3.9872 -0.0003 36 1 2.7439 4.2896 -1.0280 37 1 2.0388 3.7474 0.5139 38 1 3.4499 4.8323 0.5132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309660338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:32 Heat of formation + Delta-G solvation = -50.161026 kcal Electronic energy + Delta-G solvation = -18083.810759 eV Core-core repulsion = 15310.925604 eV Total energy + Delta-G solvation = -2772.885154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08112 -39.09956 -37.07260 -34.49363 -33.23701 -32.45192 -31.55117 -28.53292 -27.50579 -26.61571 -24.81914 -23.33461 -22.35643 -21.29721 -19.25600 -18.84792 -17.60449 -16.92817 -16.86232 -15.89019 -15.64116 -15.46538 -15.03874 -14.76312 -14.52534 -14.08007 -13.84782 -13.53632 -13.47550 -13.26652 -13.21448 -12.93699 -12.86354 -12.66761 -12.44390 -12.44125 -12.05516 -11.91899 -11.60919 -11.46458 -10.71345 -10.70128 -10.16515 -9.62000 -8.70208 -7.76689 -6.49182 0.44317 0.83853 1.53986 1.60540 1.79472 2.45735 2.53267 2.79081 2.97118 3.40237 3.91214 3.94951 4.10065 4.22997 4.39565 4.40262 4.43917 4.47969 4.63959 4.68835 4.75966 4.77824 4.86698 4.89818 4.98505 4.98618 5.06878 5.23493 5.27889 5.33750 5.44424 5.48714 5.62028 5.83942 5.92961 6.15151 6.49180 6.63127 6.86785 7.24696 7.39399 8.68959 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032387 B = 0.004896 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.324599 B = 5717.664284 C = 5831.135004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 O -0.327 6.327 4 C 0.040 3.960 5 C -0.150 4.150 6 C -0.194 4.194 7 C 0.186 3.814 8 N -0.730 5.730 9 C 0.246 3.754 10 H 0.013 0.987 11 C -0.135 4.135 12 C -0.618 4.618 13 H 0.053 0.947 14 C -0.016 4.016 15 N -0.921 5.921 16 Si 1.118 2.882 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.269 1.269 20 C -0.187 4.187 21 C -0.074 4.074 22 C -0.096 4.096 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.138 0.862 29 H 0.106 0.894 30 H 0.386 0.614 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.263 0.737 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 0.420 -5.927 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 O -0.243 6.243 4 C -0.006 4.006 5 C -0.170 4.170 6 C -0.217 4.217 7 C 0.080 3.920 8 N -0.357 5.357 9 C 0.144 3.856 10 H 0.030 0.970 11 C -0.194 4.194 12 C -0.657 4.657 13 H 0.071 0.929 14 C -0.218 4.218 15 N -0.555 5.555 16 Si 0.940 3.060 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.193 1.193 20 C -0.211 4.211 21 C -0.075 4.075 22 C -0.152 4.152 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.156 0.844 29 H 0.124 0.876 30 H 0.219 0.781 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.970 0.440 -4.520 12.803 hybrid contribution -0.382 -0.232 -1.308 1.383 sum -12.352 0.208 -5.828 13.660 Atomic orbital electron populations 1.21761 0.91075 1.03974 1.03224 1.22931 0.97045 0.81726 1.01289 1.85976 1.18186 1.29932 1.90166 1.18473 0.82601 0.93399 1.06109 1.21070 0.92885 0.98553 1.04456 1.20471 0.95078 0.95506 1.10655 1.18344 0.85541 0.93974 0.94161 1.46195 1.01106 1.09128 1.79224 1.18642 0.88600 0.85571 0.92786 0.96965 1.21989 0.99666 1.00232 0.97509 1.22407 0.97633 1.51053 0.94590 0.92893 1.27324 1.07164 0.92297 0.95009 1.70851 1.01460 1.44279 1.38955 0.82919 0.70515 0.77283 0.75308 1.20106 1.21140 1.19345 1.20448 0.92026 0.97542 1.11045 1.19248 0.93335 0.93523 1.01383 1.20589 0.97876 0.93974 1.02781 0.91561 0.88448 0.91848 0.92044 0.92554 0.84405 0.87576 0.78089 0.94143 0.93573 0.92790 0.92698 0.85222 0.90422 0.91184 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.28 71.98 0.74 -1.55 16 2 C 0.05 1.01 5.46 71.98 0.39 1.40 16 3 O -0.33 -9.72 9.17 -93.62 -0.86 -10.58 16 4 C 0.04 1.38 6.66 22.49 0.15 1.53 16 5 C -0.15 -5.34 9.03 22.35 0.20 -5.14 16 6 C -0.19 -8.00 8.87 22.39 0.20 -7.80 16 7 C 0.19 7.93 6.64 38.15 0.25 8.18 16 8 N -0.73 -33.40 5.23 -322.37 -1.68 -35.08 16 9 C 0.25 12.13 1.75 44.24 0.08 12.21 16 10 H 0.01 0.68 5.43 -2.39 -0.01 0.67 16 11 C -0.14 -5.72 9.40 71.98 0.68 -5.05 16 12 C -0.62 -33.18 8.50 25.60 0.22 -32.96 16 13 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 14 C -0.02 -0.87 5.45 84.66 0.46 -0.40 16 15 N -0.92 -55.04 13.61 21.45 0.29 -54.74 16 16 Si 1.12 48.46 29.91 68.60 2.05 50.51 16 17 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 20 C -0.19 -7.03 9.54 22.39 0.21 -6.81 16 21 C -0.07 -2.51 5.89 -19.78 -0.12 -2.63 16 22 C -0.10 -2.52 9.79 71.24 0.70 -1.83 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.29 7.66 -2.38 -0.02 1.27 16 27 H 0.06 1.25 7.66 -2.38 -0.02 1.23 16 28 H 0.14 4.11 6.29 -2.91 -0.02 4.10 16 29 H 0.11 4.59 6.03 -2.91 -0.02 4.57 16 30 H 0.39 17.38 8.61 -92.71 -0.80 16.59 16 31 H 0.04 1.59 7.64 -2.38 -0.02 1.57 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.26 16.14 6.85 -92.71 -0.64 15.50 16 35 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.79 7.52 -2.39 -0.02 1.77 16 38 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 Total: -1.00 -62.44 312.99 4.35 -58.09 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.38 Total: 32.65 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 4.16 Total: -40.84 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -1.39 Total: -89.83 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.86 Total: -10.58 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.05 Total: 50.51 kcal Total: -62.44 4.35 -58.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309660338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.928 kcal (2) G-P(sol) polarization free energy of solvation -62.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds