Wall clock time and date at job start Mon Mar 30 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38616 * 120.02011 * 0.02562 * 4 3 2 6 6 C 1.38789 * 119.87125 * 179.97438 * 5 4 3 7 7 N 1.39664 * 120.04347 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99952 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46882 * 35.00080 * 8 7 6 10 10 C 1.52993 * 109.47298 * 275.00099 * 8 7 6 11 11 C 1.50706 * 109.47168 * 154.99803 * 8 7 6 12 12 H 1.08004 * 119.99707 * 359.97438 * 11 8 7 13 13 C 1.37873 * 119.99652 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00539 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99692 * 180.02562 * 13 11 8 16 16 H 1.48509 * 109.46876 * 59.99909 * 15 13 11 17 17 H 1.48496 * 109.47025 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47071 * 299.99919 * 15 13 11 19 19 C 1.38970 * 119.90894 * 0.02562 * 6 5 4 20 20 C 1.38119 * 120.03538 * 359.97438 * 19 6 5 21 21 C 1.38222 * 120.12533 * 359.74684 * 20 19 6 22 22 C 1.50697 * 119.94915 * 180.27459 * 21 20 19 23 23 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 28 28 H 1.08000 * 120.05957 * 359.95659 * 5 4 3 29 29 H 0.97001 * 120.00406 * 359.97438 * 7 6 5 30 30 H 1.09004 * 109.47443 * 59.99740 * 10 8 7 31 31 H 1.08999 * 109.47463 * 179.97438 * 10 8 7 32 32 H 1.09001 * 109.47139 * 299.99824 * 10 8 7 33 33 H 0.96998 * 120.00237 * 179.97438 * 14 13 11 34 34 H 1.07996 * 119.98176 * 180.02562 * 19 6 5 35 35 H 1.07998 * 119.93421 * 179.97438 * 20 19 6 36 36 H 1.08995 * 109.47181 * 270.23091 * 22 21 20 37 37 H 1.09001 * 109.47459 * 30.23671 * 22 21 20 38 38 H 1.09003 * 109.46995 * 150.23437 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1984 0.4264 -0.0016 6 6 5.5738 0.6118 -0.0027 7 7 6.4283 -0.4929 -0.0032 8 6 7.8800 -0.2960 -0.0049 9 1 8.1276 0.5872 0.5839 10 6 8.3669 -0.1035 -1.4425 11 6 8.5516 -1.5044 0.5953 12 1 7.9564 -2.3356 0.9436 13 6 9.9256 -1.5481 0.7007 14 7 10.6502 -0.5353 0.2779 15 14 10.7580 -3.0462 1.4441 16 1 10.4211 -4.2491 0.6410 17 1 12.2294 -2.8460 1.4436 18 1 10.2849 -3.2340 2.8392 19 6 6.0996 1.8982 -0.0022 20 6 5.2543 2.9906 -0.0011 21 6 3.8843 2.8076 -0.0059 22 6 2.9657 4.0022 -0.0109 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7870 -0.5722 -0.0013 29 1 6.0606 -1.3905 -0.0024 30 1 7.8812 0.7705 -1.8767 31 1 9.4470 0.0434 -1.4437 32 1 8.1194 -0.9867 -2.0313 33 1 11.6168 -0.5660 0.3525 34 1 7.1697 2.0439 -0.0034 35 1 5.6647 3.9896 -0.0003 36 1 2.7438 4.2943 1.0154 37 1 3.4499 4.8307 -0.5279 38 1 2.0389 3.7457 -0.5242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309943479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:34 Heat of formation + Delta-G solvation = -28.456867 kcal Electronic energy + Delta-G solvation = -17954.531184 eV Core-core repulsion = 15182.587192 eV Total energy + Delta-G solvation = -2771.943991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82547 -37.66066 -35.50841 -33.11151 -31.63426 -30.98140 -29.34436 -28.30442 -25.48890 -24.84445 -23.78699 -21.81320 -20.82750 -19.91642 -17.59639 -16.93307 -15.94302 -15.63609 -15.15907 -14.87812 -14.42337 -13.73486 -13.56936 -13.15285 -13.11361 -12.58924 -12.54444 -12.46940 -12.38093 -11.74879 -11.59105 -11.50900 -11.12392 -11.02363 -10.94061 -10.70835 -10.55531 -10.42574 -10.25478 -10.11789 -9.16834 -8.93845 -8.50743 -7.86505 -6.47915 -6.17277 -4.25813 2.01154 2.23966 3.22964 3.28079 3.29843 3.46314 4.23728 4.42620 4.55116 4.93185 5.00635 5.15064 5.25387 5.34102 5.49830 5.53407 5.72782 5.74844 5.85924 5.93479 6.02385 6.08206 6.17435 6.20686 6.50572 6.70414 6.77209 6.93471 7.03464 7.05131 7.15259 7.26454 7.42524 7.63347 7.79815 7.88021 8.06197 8.35239 8.68721 8.89255 9.41351 10.88396 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.004907 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.002921 B = 5704.775631 C = 6380.357617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.171 3.829 5 C -0.303 4.303 6 C 0.268 3.732 7 N -0.722 5.722 8 C 0.267 3.733 9 H 0.042 0.958 10 C -0.152 4.152 11 C -0.532 4.532 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 C -0.230 4.230 20 C -0.037 4.037 21 C -0.204 4.204 22 C -0.086 4.086 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.388 0.612 30 H 0.014 0.986 31 H 0.089 0.911 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.269 3.328 -1.123 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.125 3.875 5 C -0.328 4.328 6 C 0.157 3.843 7 N -0.343 5.343 8 C 0.164 3.836 9 H 0.059 0.941 10 C -0.211 4.211 11 C -0.570 4.570 12 H 0.077 0.923 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.729 3.271 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.253 4.253 20 C -0.056 4.056 21 C -0.207 4.207 22 C -0.143 4.143 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.221 0.779 30 H 0.033 0.967 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.958 3.536 -1.139 14.443 hybrid contribution 0.568 -1.540 0.376 1.684 sum -13.390 1.996 -0.763 13.559 Atomic orbital electron populations 1.21759 0.93319 1.02455 1.03178 1.22673 0.95175 0.82766 1.01405 1.85995 1.19879 1.28425 1.88895 1.18379 0.81048 0.93237 0.94796 1.20459 0.92573 0.97647 1.22086 1.17733 0.88910 0.88709 0.88916 1.45618 1.07019 1.04685 1.76971 1.18740 0.73763 0.97714 0.93366 0.94058 1.22178 1.03936 0.97246 0.97732 1.21169 0.91791 1.02848 1.41186 0.92259 1.24864 0.97109 0.96517 0.95126 1.69862 1.06156 1.30342 1.46019 0.86508 0.78274 0.82639 0.79698 1.20186 1.21066 1.20171 1.20720 1.00365 0.90791 1.13460 1.20522 0.91453 0.98041 0.95544 1.18748 0.93905 0.91843 1.16241 1.20350 0.98131 0.94931 1.00875 0.91745 0.91761 0.90751 0.92255 0.92298 0.86525 0.77885 0.96669 0.89207 0.95338 0.92499 0.85516 0.86308 0.92931 0.92790 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.66 5.46 37.16 0.20 0.86 16 3 O -0.32 -4.83 9.17 -19.44 -0.18 -5.01 16 4 C 0.17 2.93 6.66 -39.25 -0.26 2.66 16 5 C -0.30 -5.40 8.88 -39.24 -0.35 -5.75 16 6 C 0.27 5.35 6.63 -83.81 -0.56 4.80 16 7 N -0.72 -15.36 5.24 -53.31 -0.28 -15.64 16 8 C 0.27 6.53 2.25 -69.08 -0.16 6.37 16 9 H 0.04 1.11 6.48 -51.93 -0.34 0.77 16 10 C -0.15 -3.64 9.20 37.15 0.34 -3.30 16 11 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 12 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 13 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 14 N -0.89 -24.31 11.32 55.43 0.63 -23.69 16 15 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.23 -4.52 8.85 -39.35 -0.35 -4.86 16 20 C -0.04 -0.62 9.69 -39.63 -0.38 -1.01 16 21 C -0.20 -3.40 5.90 -104.43 -0.62 -4.02 16 22 C -0.09 -1.17 9.79 36.00 0.35 -0.82 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.69 7.66 -51.93 -0.40 0.30 16 27 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16 28 H 0.12 1.87 6.30 -52.49 -0.33 1.53 16 29 H 0.39 7.72 8.55 -40.82 -0.35 7.37 16 30 H 0.01 0.32 7.71 -51.93 -0.40 -0.08 16 31 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.13 2.63 6.11 -52.49 -0.32 2.31 16 35 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.06 0.78 7.53 -51.93 -0.39 0.39 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -27.86 311.18 -7.68 -35.55 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.74 Total: 7.21 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.78 Total: -18.67 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.35 Total: -39.33 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.18 Total: -5.01 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.86 -7.68 -35.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309943479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.088 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds