Wall clock time and date at job start Mon Mar 30 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38616 * 120.02011 * 0.02562 * 4 3 2 6 6 C 1.38789 * 119.87125 * 179.97438 * 5 4 3 7 7 N 1.39664 * 120.04347 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99952 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46882 * 35.00080 * 8 7 6 10 10 C 1.52993 * 109.47298 * 275.00099 * 8 7 6 11 11 C 1.50706 * 109.47168 * 154.99803 * 8 7 6 12 12 H 1.08004 * 119.99707 * 359.97438 * 11 8 7 13 13 C 1.37873 * 119.99652 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00539 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99692 * 180.02562 * 13 11 8 16 16 H 1.48509 * 109.46876 * 59.99909 * 15 13 11 17 17 H 1.48496 * 109.47025 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47071 * 299.99919 * 15 13 11 19 19 C 1.38970 * 119.90894 * 0.02562 * 6 5 4 20 20 C 1.38119 * 120.03538 * 359.97438 * 19 6 5 21 21 C 1.38222 * 120.12533 * 359.74684 * 20 19 6 22 22 C 1.50697 * 119.94915 * 180.27459 * 21 20 19 23 23 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 28 28 H 1.08000 * 120.05957 * 359.95659 * 5 4 3 29 29 H 0.97001 * 120.00406 * 359.97438 * 7 6 5 30 30 H 1.09004 * 109.47443 * 59.99740 * 10 8 7 31 31 H 1.08999 * 109.47463 * 179.97438 * 10 8 7 32 32 H 1.09001 * 109.47139 * 299.99824 * 10 8 7 33 33 H 0.96998 * 120.00237 * 179.97438 * 14 13 11 34 34 H 1.07996 * 119.98176 * 180.02562 * 19 6 5 35 35 H 1.07998 * 119.93421 * 179.97438 * 20 19 6 36 36 H 1.08995 * 109.47181 * 270.23091 * 22 21 20 37 37 H 1.09001 * 109.47459 * 30.23671 * 22 21 20 38 38 H 1.09003 * 109.46995 * 150.23437 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1984 0.4264 -0.0016 6 6 5.5738 0.6118 -0.0027 7 7 6.4283 -0.4929 -0.0032 8 6 7.8800 -0.2960 -0.0049 9 1 8.1276 0.5872 0.5839 10 6 8.3669 -0.1035 -1.4425 11 6 8.5516 -1.5044 0.5953 12 1 7.9564 -2.3356 0.9436 13 6 9.9256 -1.5481 0.7007 14 7 10.6502 -0.5353 0.2779 15 14 10.7580 -3.0462 1.4441 16 1 10.4211 -4.2491 0.6410 17 1 12.2294 -2.8460 1.4436 18 1 10.2849 -3.2340 2.8392 19 6 6.0996 1.8982 -0.0022 20 6 5.2543 2.9906 -0.0011 21 6 3.8843 2.8076 -0.0059 22 6 2.9657 4.0022 -0.0109 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7870 -0.5722 -0.0013 29 1 6.0606 -1.3905 -0.0024 30 1 7.8812 0.7705 -1.8767 31 1 9.4470 0.0434 -1.4437 32 1 8.1194 -0.9867 -2.0313 33 1 11.6168 -0.5660 0.3525 34 1 7.1697 2.0439 -0.0034 35 1 5.6647 3.9896 -0.0003 36 1 2.7438 4.2943 1.0154 37 1 3.4499 4.8307 -0.5279 38 1 2.0389 3.7457 -0.5242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309943479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:34 Heat of formation + Delta-G solvation = -43.531536 kcal Electronic energy + Delta-G solvation = -17955.184870 eV Core-core repulsion = 15182.587192 eV Total energy + Delta-G solvation = -2772.597678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13262 -39.05249 -37.09856 -34.87551 -32.77090 -32.42865 -30.68590 -29.94693 -27.39953 -26.29906 -24.87813 -23.35639 -22.15199 -21.48879 -19.16089 -18.53798 -17.27232 -16.99104 -16.72497 -16.57515 -15.79320 -15.38497 -14.75814 -14.50275 -14.43961 -14.26237 -13.96728 -13.50187 -13.34084 -13.31771 -13.06406 -12.84702 -12.76769 -12.60536 -12.47487 -12.28842 -12.18546 -11.87273 -11.73139 -11.65110 -11.09004 -10.64296 -10.36493 -9.24647 -8.21384 -8.00125 -6.34962 0.61061 0.81772 1.42261 1.43206 1.51206 2.33219 2.37855 2.90078 3.00291 3.11244 3.99938 4.08779 4.17197 4.25046 4.39043 4.43252 4.50492 4.66322 4.71412 4.82371 4.92314 4.95377 4.97682 4.98782 5.00091 5.10313 5.21601 5.28013 5.43268 5.44049 5.60381 5.63813 5.76758 5.84035 5.98456 6.09047 6.52266 6.57133 6.82862 7.18263 7.37550 8.85985 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.004907 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.002921 B = 5704.775631 C = 6380.357617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 O -0.320 6.320 4 C 0.167 3.833 5 C -0.301 4.301 6 C 0.244 3.756 7 N -0.728 5.728 8 C 0.276 3.724 9 H 0.011 0.989 10 C -0.138 4.138 11 C -0.550 4.550 12 H 0.060 0.940 13 C 0.020 3.980 14 N -0.913 5.913 15 Si 0.966 3.034 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.253 4.253 20 C -0.035 4.035 21 C -0.204 4.204 22 C -0.083 4.083 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.393 0.607 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.266 0.734 34 H 0.105 0.895 35 H 0.145 0.855 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 3.197 -0.949 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 O -0.234 6.234 4 C 0.121 3.879 5 C -0.325 4.325 6 C 0.136 3.864 7 N -0.352 5.352 8 C 0.173 3.827 9 H 0.029 0.971 10 C -0.197 4.197 11 C -0.588 4.588 12 H 0.078 0.922 13 C -0.180 4.180 14 N -0.551 5.551 15 Si 0.791 3.209 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.277 4.277 20 C -0.053 4.053 21 C -0.207 4.207 22 C -0.140 4.140 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.227 0.773 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.162 0.838 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.823 3.418 -0.967 16.217 hybrid contribution 0.981 -1.419 0.320 1.755 sum -14.842 1.999 -0.647 14.990 Atomic orbital electron populations 1.21774 0.90856 1.04061 1.03383 1.22996 0.97133 0.81297 1.01618 1.86012 1.18467 1.30517 1.88442 1.18558 0.82006 0.93259 0.94115 1.20602 0.91688 0.98901 1.21306 1.17932 0.89677 0.88370 0.90404 1.45281 1.05770 1.05392 1.78738 1.18372 0.75704 0.95888 0.92780 0.97090 1.21987 1.02414 0.97503 0.97756 1.21498 0.92386 1.03448 1.41486 0.92154 1.25668 0.97718 0.99195 0.95461 1.69989 1.06334 1.31990 1.46780 0.85496 0.77190 0.79356 0.78880 1.19438 1.20706 1.19839 1.20731 0.99770 0.91823 1.15331 1.20789 0.91591 0.98468 0.94499 1.19212 0.94205 0.93035 1.14235 1.20397 0.97639 0.94063 1.01914 0.91571 0.91506 0.88460 0.92115 0.92022 0.85038 0.77318 0.95825 0.91396 0.95341 0.92456 0.87674 0.83754 0.91833 0.90915 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.04 0.96 5.46 71.98 0.39 1.36 16 3 O -0.32 -9.05 9.17 -92.47 -0.85 -9.90 16 4 C 0.17 5.45 6.66 22.49 0.15 5.60 16 5 C -0.30 -10.51 8.88 22.49 0.20 -10.31 16 6 C 0.24 9.87 6.63 38.20 0.25 10.12 16 7 N -0.73 -31.66 5.24 -322.56 -1.69 -33.35 16 8 C 0.28 13.98 2.25 44.24 0.10 14.08 16 9 H 0.01 0.64 6.48 -2.39 -0.02 0.62 16 10 C -0.14 -6.78 9.20 71.98 0.66 -6.12 16 11 C -0.55 -29.52 8.73 25.60 0.22 -29.30 16 12 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 13 C 0.02 1.07 5.30 84.65 0.45 1.52 16 14 N -0.91 -51.10 11.32 21.45 0.24 -50.85 16 15 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 C -0.25 -10.13 8.85 22.42 0.20 -9.93 16 20 C -0.03 -1.15 9.69 22.24 0.22 -0.94 16 21 C -0.20 -6.40 5.90 -19.74 -0.12 -6.52 16 22 C -0.08 -2.02 9.79 71.24 0.70 -1.32 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.30 7.66 -2.39 -0.02 1.29 16 27 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 28 H 0.13 4.07 6.30 -2.91 -0.02 4.05 16 29 H 0.39 15.86 8.55 -92.71 -0.79 15.06 16 30 H 0.02 1.07 7.71 -2.39 -0.02 1.05 16 31 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.11 4.60 6.11 -2.91 -0.02 4.58 16 35 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 38 H 0.06 1.46 7.53 -2.39 -0.02 1.44 16 Total: -1.00 -59.71 311.18 4.15 -55.55 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.26 Total: 27.44 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 4.16 Total: -33.20 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -1.45 Total: -84.21 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.85 Total: -9.90 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -59.71 4.15 -55.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309943479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.022 kcal (2) G-P(sol) polarization free energy of solvation -59.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds