Wall clock time and date at job start Mon Mar 30 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.46892 * 2 1 4 4 C 1.35899 * 117.00101 * 180.02562 * 3 2 1 5 5 C 1.38728 * 120.05425 * 179.97438 * 4 3 2 6 6 C 1.38142 * 119.94416 * 180.02562 * 5 4 3 7 7 C 1.38272 * 120.05405 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.94228 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.47120 * 90.00176 * 8 7 6 10 10 C 1.46904 * 111.00107 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.46566 * 324.99944 * 10 9 8 12 12 C 1.52998 * 109.47027 * 84.99918 * 10 9 8 13 13 C 1.50701 * 109.47195 * 205.00268 * 10 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27796 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.38268 * 120.11137 * 0.25210 * 7 6 5 22 22 C 1.38143 * 120.05140 * 359.45259 * 21 7 6 23 23 H 1.08997 * 109.47344 * 299.99447 * 1 2 3 24 24 H 1.08993 * 109.47495 * 59.99833 * 1 2 3 25 25 H 1.09003 * 109.46645 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47344 * 240.00553 * 2 1 3 27 27 H 1.08993 * 109.47495 * 120.00166 * 2 1 3 28 28 H 1.07999 * 120.03449 * 0.02562 * 5 4 3 29 29 H 1.08004 * 119.97559 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47417 * 329.99926 * 8 7 6 31 31 H 1.09001 * 109.46800 * 209.99799 * 8 7 6 32 32 H 1.00900 * 110.99885 * 56.04421 * 9 8 7 33 33 H 1.09004 * 109.46783 * 180.02562 * 12 10 9 34 34 H 1.09005 * 109.46870 * 300.00063 * 12 10 9 35 35 H 1.08998 * 109.47156 * 60.00002 * 12 10 9 36 36 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 37 37 H 1.08002 * 119.96838 * 179.70254 * 21 7 6 38 38 H 1.08003 * 120.02152 * 180.24785 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5255 -0.0005 5 6 3.8849 2.8070 -0.0011 6 6 5.2548 2.9854 -0.0022 7 6 6.0961 1.8881 -0.0032 8 6 7.5901 2.0857 -0.0050 9 7 8.0772 2.1498 1.3794 10 6 9.5331 2.3417 1.4169 11 1 9.9915 1.8076 0.5845 12 6 9.8539 3.8334 1.3043 13 6 10.0769 1.8075 2.7169 14 1 9.4078 1.3697 3.4428 15 6 11.4277 1.8835 2.9821 16 7 12.2425 2.4170 2.0983 17 14 12.1008 1.2285 4.5968 18 1 12.4652 -0.2023 4.4373 19 1 13.3057 2.0060 4.9827 20 1 11.0666 1.3609 5.6543 21 6 5.5689 0.6099 -0.0085 22 6 4.1997 0.4262 -0.0012 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.2283 3.6644 -0.0007 29 1 5.6690 3.9829 -0.0022 30 1 7.8330 3.0156 -0.5191 31 1 8.0663 1.2510 -0.5194 32 1 7.8079 1.3259 1.8959 33 1 10.9343 3.9757 1.3317 34 1 9.4606 4.2197 0.3639 35 1 9.3955 4.3675 2.1366 36 1 13.1928 2.4708 2.2850 37 1 6.2281 -0.2456 -0.0142 38 1 3.7885 -0.5725 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309949994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:42 Heat of formation + Delta-G solvation = -23.667977 kcal Electronic energy + Delta-G solvation = -17422.996665 eV Core-core repulsion = 14651.260336 eV Total energy + Delta-G solvation = -2771.736330 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.06793 -37.83350 -35.62795 -32.86583 -31.94339 -30.78400 -30.20436 -27.71541 -25.31120 -24.32602 -23.78080 -21.90480 -20.76432 -19.73125 -18.23622 -16.65575 -16.20783 -15.89242 -15.16313 -14.75431 -14.32004 -14.07946 -13.72079 -13.39693 -13.32845 -13.11280 -12.91488 -12.57736 -11.95587 -11.82392 -11.65661 -11.56879 -11.07240 -10.86634 -10.74641 -10.66374 -10.62423 -10.24061 -10.10875 -9.91018 -8.84056 -8.81194 -8.47349 -7.94246 -7.23769 -6.02146 -4.08604 1.52407 1.60297 3.15255 3.29672 3.36416 3.40748 3.93395 4.41321 4.69262 4.72367 4.94204 5.00895 5.04509 5.22010 5.26971 5.29061 5.51137 5.53052 5.57897 5.68686 5.76030 5.84611 6.01324 6.23913 6.30764 6.43910 6.52744 6.86882 6.93277 6.98345 7.15262 7.24445 7.47067 7.51789 7.78914 7.90775 8.28551 8.40390 8.68029 9.02246 9.57382 11.04136 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.039080 B = 0.003785 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.303196 B = 7396.612803 C = 7815.221378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.116 3.884 5 C -0.154 4.154 6 C -0.061 4.061 7 C -0.101 4.101 8 C 0.099 3.901 9 N -0.683 5.683 10 C 0.210 3.790 11 H 0.001 0.999 12 C -0.125 4.125 13 C -0.518 4.518 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.077 4.077 22 C -0.209 4.209 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.331 0.669 33 H 0.081 0.919 34 H 0.004 0.996 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.122 0.878 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.334 -3.946 -5.869 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.072 3.928 5 C -0.172 4.172 6 C -0.079 4.079 7 C -0.101 4.101 8 C -0.031 4.031 9 N -0.314 5.314 10 C 0.103 3.897 11 H 0.018 0.982 12 C -0.183 4.183 13 C -0.557 4.557 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.096 4.096 22 C -0.228 4.228 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.148 0.852 33 H 0.099 0.901 34 H 0.023 0.977 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.140 0.860 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.408 -3.085 -5.826 19.553 hybrid contribution 0.855 -1.492 0.621 1.829 sum -17.553 -4.577 -5.205 18.872 Atomic orbital electron populations 1.21768 0.92983 1.02678 1.03424 1.22724 0.95617 0.82382 1.01337 1.86035 1.19476 1.28886 1.89103 1.18937 0.81835 0.94281 0.97795 1.20394 0.95247 0.94518 1.07069 1.20889 0.91600 0.99171 0.96290 1.19992 0.96465 0.92662 1.01018 1.20852 0.88856 1.00368 0.92975 1.60799 1.16840 1.44259 1.09491 1.19131 0.80839 0.93565 0.96145 0.98158 1.21719 1.02880 0.97329 0.96384 1.21273 0.92552 1.39126 1.02712 0.92220 1.24918 0.96940 0.95213 0.96942 1.69895 1.03728 1.44617 1.34689 0.86523 0.78509 0.78714 0.83808 1.20775 1.21192 1.19827 1.20883 0.94081 0.97065 0.97568 1.21127 0.94323 0.97635 1.09676 0.91556 0.91632 0.90535 0.92232 0.92121 0.85603 0.85212 0.91015 0.95525 0.85204 0.90088 0.97688 0.94934 0.92926 0.86032 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.07 10.14 -19.42 -0.20 -4.27 16 4 C 0.12 1.62 6.69 -39.22 -0.26 1.35 16 5 C -0.15 -2.15 9.99 -39.44 -0.39 -2.55 16 6 C -0.06 -0.91 9.69 -39.60 -0.38 -1.30 16 7 C -0.10 -1.62 5.39 -104.60 -0.56 -2.18 16 8 C 0.10 1.82 5.61 -4.98 -0.03 1.79 16 9 N -0.68 -14.86 6.29 -109.22 -0.69 -15.54 16 10 C 0.21 5.39 2.60 -68.86 -0.18 5.21 16 11 H 0.00 0.02 7.80 -51.93 -0.40 -0.38 16 12 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 13 C -0.52 -14.35 8.59 -34.44 -0.30 -14.65 16 14 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -25.58 11.31 55.43 0.63 -24.96 16 17 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.08 -1.13 9.69 -39.61 -0.38 -1.51 16 22 C -0.21 -2.78 9.04 -39.44 -0.36 -3.14 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 30 H 0.07 1.32 7.38 -51.93 -0.38 0.94 16 31 H 0.03 0.49 7.99 -51.93 -0.42 0.08 16 32 H 0.33 7.12 8.21 -39.29 -0.32 6.80 16 33 H 0.08 2.21 6.06 -51.93 -0.31 1.89 16 34 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.12 1.33 6.30 -52.48 -0.33 1.00 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -29.63 315.32 -8.39 -38.02 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.85 Total: 3.76 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.02 Total: -18.12 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: -0.06 Total: -40.50 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.20 Total: -4.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.63 -8.39 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309949994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.353 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds