Wall clock time and date at job start Mon Mar 30 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.46892 * 2 1 4 4 C 1.35899 * 117.00101 * 180.02562 * 3 2 1 5 5 C 1.38728 * 120.05425 * 179.97438 * 4 3 2 6 6 C 1.38142 * 119.94416 * 180.02562 * 5 4 3 7 7 C 1.38272 * 120.05405 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.94228 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.47120 * 90.00176 * 8 7 6 10 10 C 1.46904 * 111.00107 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.46566 * 324.99944 * 10 9 8 12 12 C 1.52998 * 109.47027 * 84.99918 * 10 9 8 13 13 C 1.50701 * 109.47195 * 205.00268 * 10 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27796 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.38268 * 120.11137 * 0.25210 * 7 6 5 22 22 C 1.38143 * 120.05140 * 359.45259 * 21 7 6 23 23 H 1.08997 * 109.47344 * 299.99447 * 1 2 3 24 24 H 1.08993 * 109.47495 * 59.99833 * 1 2 3 25 25 H 1.09003 * 109.46645 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47344 * 240.00553 * 2 1 3 27 27 H 1.08993 * 109.47495 * 120.00166 * 2 1 3 28 28 H 1.07999 * 120.03449 * 0.02562 * 5 4 3 29 29 H 1.08004 * 119.97559 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47417 * 329.99926 * 8 7 6 31 31 H 1.09001 * 109.46800 * 209.99799 * 8 7 6 32 32 H 1.00900 * 110.99885 * 56.04421 * 9 8 7 33 33 H 1.09004 * 109.46783 * 180.02562 * 12 10 9 34 34 H 1.09005 * 109.46870 * 300.00063 * 12 10 9 35 35 H 1.08998 * 109.47156 * 60.00002 * 12 10 9 36 36 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 37 37 H 1.08002 * 119.96838 * 179.70254 * 21 7 6 38 38 H 1.08003 * 120.02152 * 180.24785 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5255 -0.0005 5 6 3.8849 2.8070 -0.0011 6 6 5.2548 2.9854 -0.0022 7 6 6.0961 1.8881 -0.0032 8 6 7.5901 2.0857 -0.0050 9 7 8.0772 2.1498 1.3794 10 6 9.5331 2.3417 1.4169 11 1 9.9915 1.8076 0.5845 12 6 9.8539 3.8334 1.3043 13 6 10.0769 1.8075 2.7169 14 1 9.4078 1.3697 3.4428 15 6 11.4277 1.8835 2.9821 16 7 12.2425 2.4170 2.0983 17 14 12.1008 1.2285 4.5968 18 1 12.4652 -0.2023 4.4373 19 1 13.3057 2.0060 4.9827 20 1 11.0666 1.3609 5.6543 21 6 5.5689 0.6099 -0.0085 22 6 4.1997 0.4262 -0.0012 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.2283 3.6644 -0.0007 29 1 5.6690 3.9829 -0.0022 30 1 7.8330 3.0156 -0.5191 31 1 8.0663 1.2510 -0.5194 32 1 7.8079 1.3259 1.8959 33 1 10.9343 3.9757 1.3317 34 1 9.4606 4.2197 0.3639 35 1 9.3955 4.3675 2.1366 36 1 13.1928 2.4708 2.2850 37 1 6.2281 -0.2456 -0.0142 38 1 3.7885 -0.5725 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309949994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:41 Heat of formation + Delta-G solvation = -41.283264 kcal Electronic energy + Delta-G solvation = -17423.760522 eV Core-core repulsion = 14651.260336 eV Total energy + Delta-G solvation = -2772.500186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09302 -38.97970 -37.35448 -34.65113 -32.93570 -31.90681 -31.58612 -29.34048 -27.36128 -25.62752 -24.83184 -22.91493 -22.00305 -21.62108 -19.21398 -18.60717 -17.12281 -17.00660 -16.80322 -16.29937 -15.68023 -15.48214 -15.32824 -14.57502 -14.39993 -14.33250 -14.18735 -13.49988 -13.46389 -13.16967 -13.01749 -12.82400 -12.63177 -12.57679 -12.40520 -12.19125 -12.14284 -11.74936 -11.63843 -11.54981 -10.89625 -10.57567 -9.92014 -9.16605 -8.94409 -8.13374 -6.27894 0.42846 0.45930 1.41937 1.43422 1.54232 2.28869 2.41549 2.79579 3.15059 3.76390 3.87204 3.95586 4.06549 4.07769 4.18464 4.36208 4.40195 4.47644 4.57040 4.75982 4.77207 4.86152 4.94206 4.96158 5.08669 5.13306 5.21516 5.21701 5.33844 5.40804 5.47883 5.66340 5.77269 5.84584 5.86375 6.22592 6.46313 6.50032 6.76407 6.98939 7.42615 8.92189 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.039080 B = 0.003785 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.303196 B = 7396.612803 C = 7815.221378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.116 3.884 5 C -0.160 4.160 6 C -0.067 4.067 7 C -0.120 4.120 8 C 0.105 3.895 9 N -0.681 5.681 10 C 0.215 3.785 11 H -0.029 1.029 12 C -0.114 4.114 13 C -0.539 4.539 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.963 3.037 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.082 4.082 22 C -0.207 4.207 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.023 0.977 32 H 0.331 0.669 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.129 0.871 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.924 -4.906 -5.410 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.246 6.246 4 C 0.071 3.929 5 C -0.179 4.179 6 C -0.085 4.085 7 C -0.121 4.121 8 C -0.024 4.024 9 N -0.311 5.311 10 C 0.106 3.894 11 H -0.012 1.012 12 C -0.173 4.173 13 C -0.577 4.577 14 H 0.076 0.924 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.789 3.211 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.100 4.100 22 C -0.225 4.225 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.151 0.849 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.147 0.853 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.025 -4.051 -5.377 21.127 hybrid contribution 1.229 -1.222 0.421 1.784 sum -18.797 -5.274 -4.956 20.142 Atomic orbital electron populations 1.21799 0.91338 1.04162 1.03209 1.23064 0.96989 0.80894 1.02180 1.86042 1.18600 1.31212 1.88741 1.19101 0.82651 0.94359 0.96814 1.20578 0.95007 0.95477 1.06821 1.20961 0.92109 0.99086 0.96367 1.19805 0.94853 0.93864 1.03563 1.20784 0.90710 1.00043 0.90856 1.60719 1.14293 1.44368 1.11757 1.18943 0.82868 0.93200 0.94350 1.01157 1.21551 1.01301 0.97231 0.97169 1.21593 0.93089 1.39548 1.03502 0.92361 1.25736 0.97218 0.95356 1.00293 1.70020 1.03995 1.45306 1.36401 0.85479 0.77778 0.78253 0.79640 1.20005 1.20793 1.19321 1.21012 0.94978 0.96696 0.97333 1.21355 0.93609 0.98857 1.08684 0.91912 0.91715 0.88198 0.91131 0.91454 0.84111 0.84877 0.91351 0.95872 0.85153 0.92379 0.95779 0.95367 0.92783 0.85304 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.04 0.68 5.46 71.98 0.39 1.07 16 3 O -0.33 -7.71 10.14 -92.41 -0.94 -8.65 16 4 C 0.12 3.01 6.69 22.50 0.15 3.16 16 5 C -0.16 -4.27 9.99 22.36 0.22 -4.05 16 6 C -0.07 -1.95 9.69 22.26 0.22 -1.73 16 7 C -0.12 -3.80 5.39 -19.85 -0.11 -3.91 16 8 C 0.10 3.89 5.61 85.56 0.48 4.37 16 9 N -0.68 -29.81 6.29 -499.45 -3.14 -32.96 16 10 C 0.21 11.17 2.60 44.17 0.12 11.29 16 11 H -0.03 -1.66 7.80 -2.38 -0.02 -1.68 16 12 C -0.11 -5.81 9.19 71.98 0.66 -5.15 16 13 C -0.54 -30.10 8.59 25.60 0.22 -29.88 16 14 H 0.06 3.19 7.62 -2.91 -0.02 3.17 16 15 C 0.01 0.73 5.30 84.65 0.45 1.18 16 16 N -0.92 -53.32 11.31 21.45 0.24 -53.08 16 17 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 C -0.08 -2.29 9.69 22.25 0.22 -2.07 16 22 C -0.21 -5.07 9.04 22.36 0.20 -4.87 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 27 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 28 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 29 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 30 H 0.07 2.54 7.38 -2.39 -0.02 2.52 16 31 H 0.02 0.87 7.99 -2.39 -0.02 0.85 16 32 H 0.33 14.33 8.21 -89.69 -0.74 13.59 16 33 H 0.06 3.22 6.06 -2.38 -0.01 3.21 16 34 H 0.02 1.08 7.45 -2.38 -0.02 1.06 16 35 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 37 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.15 2.78 6.30 -2.91 -0.02 2.76 16 Total: -1.00 -62.58 315.32 2.45 -60.13 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.30 Total: 20.32 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 3.96 Total: -31.53 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -2.90 Total: -86.04 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.94 Total: -8.65 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -62.58 2.45 -60.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309949994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.844 kcal (2) G-P(sol) polarization free energy of solvation -62.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds