Wall clock time and date at job start Mon Mar 30 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47090 * 2 1 4 4 C 1.46898 * 111.00022 * 199.92181 * 3 2 1 5 5 C 1.50700 * 109.46957 * 68.87353 * 4 3 2 6 6 H 1.07999 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99738 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99750 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00214 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47012 * 90.00205 * 9 7 5 11 11 H 1.48495 * 109.47326 * 210.00558 * 9 7 5 12 12 H 1.48503 * 109.47071 * 330.00506 * 9 7 5 13 13 C 1.46905 * 110.99850 * 75.97168 * 3 2 1 14 14 H 1.09001 * 109.46651 * 315.79965 * 13 3 2 15 15 C 1.52994 * 109.47418 * 75.80064 * 13 3 2 16 16 C 1.50702 * 109.46974 * 195.80161 * 13 3 2 17 17 C 1.38388 * 119.99781 * 156.59224 * 16 13 3 18 18 N 1.32135 * 119.99527 * 179.73671 * 17 16 13 19 19 C 1.32150 * 119.99747 * 0.53615 * 18 17 16 20 20 C 1.50700 * 120.00192 * 179.71226 * 19 18 17 21 21 C 1.38353 * 120.00348 * 359.74114 * 19 18 17 22 22 N 1.32124 * 120.00072 * 336.87037 * 16 13 3 23 23 H 1.09007 * 109.47276 * 54.71829 * 1 2 3 24 24 H 1.08995 * 109.47102 * 174.72033 * 1 2 3 25 25 H 1.09006 * 109.46889 * 294.71994 * 1 2 3 26 26 H 1.08998 * 109.47130 * 119.99998 * 2 1 3 27 27 H 1.08998 * 109.47253 * 240.00539 * 2 1 3 28 28 H 1.08999 * 109.47191 * 188.87316 * 4 3 2 29 29 H 1.09001 * 109.47397 * 308.87338 * 4 3 2 30 30 H 0.96994 * 120.00066 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47265 * 300.00638 * 15 13 3 32 32 H 1.09005 * 109.47291 * 59.99792 * 15 13 3 33 33 H 1.08997 * 109.47508 * 179.97438 * 15 13 3 34 34 H 1.07996 * 120.00294 * 0.02562 * 17 16 13 35 35 H 1.09003 * 109.47486 * 270.03087 * 20 19 18 36 36 H 1.09006 * 109.46457 * 30.02450 * 20 19 18 37 37 H 1.09000 * 109.47726 * 150.02118 * 20 19 18 38 38 H 1.08001 * 119.99837 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4107 1.4516 -0.4673 5 6 3.4639 1.1166 -1.9356 6 1 2.5553 0.8777 -2.4683 7 6 4.6728 1.1141 -2.5988 8 7 4.7193 0.8212 -3.8801 9 14 6.2445 1.5265 -1.6773 10 1 6.8312 0.2824 -1.1177 11 1 7.2143 2.1555 -2.6095 12 1 5.9373 2.4696 -0.5721 13 6 1.8817 1.9921 1.3306 14 1 0.9026 1.7468 1.7421 15 6 2.9737 1.4496 2.2545 16 6 2.0180 3.4886 1.2165 17 6 1.4658 4.3095 2.1841 18 7 1.5899 5.6214 2.0868 19 6 2.2321 6.1499 1.0598 20 6 2.3680 7.6464 0.9453 21 6 2.7791 5.3294 0.0894 22 7 2.6599 4.0171 0.1897 23 1 -0.3634 0.5936 -0.8389 24 1 -0.3633 -1.0233 -0.0946 25 1 -0.3633 0.4298 0.9336 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 3.7991 2.4578 -0.3099 29 1 4.0160 0.7370 0.0905 30 1 5.5697 0.8198 -4.3467 31 1 2.8752 0.3671 2.3370 32 1 3.9529 1.6948 1.8430 33 1 2.8717 1.9003 3.2416 34 1 0.9376 3.8777 3.0213 35 1 1.5208 8.0467 0.3883 36 1 2.3880 8.0867 1.9423 37 1 3.2934 7.8883 0.4227 38 1 3.3035 5.7615 -0.7501 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331198996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:37 Heat of formation + Delta-G solvation = 58.060418 kcal Electronic energy + Delta-G solvation = -18733.798110 eV Core-core repulsion = 15997.898541 eV Total energy + Delta-G solvation = -2735.899569 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95706 -37.80210 -34.16330 -33.05772 -32.39160 -31.09290 -29.61469 -27.39826 -26.42626 -24.38766 -23.62085 -22.02988 -21.62907 -19.01535 -17.48312 -16.72364 -16.16832 -15.66570 -14.91084 -14.73043 -14.35788 -13.82822 -13.51548 -13.29293 -12.96707 -12.82840 -12.55246 -12.41792 -12.40485 -12.00201 -11.71427 -11.28106 -11.20119 -11.03224 -10.93608 -10.72495 -10.57500 -10.26576 -9.88230 -9.71468 -9.20142 -8.77945 -8.57206 -8.32440 -7.28076 -5.93699 -3.86632 1.01694 1.46643 3.33310 3.40940 3.45482 3.93155 4.19453 4.47583 4.52044 4.56114 4.79499 5.01422 5.25479 5.30114 5.39979 5.46668 5.51509 5.54280 5.66766 5.72865 5.77103 5.79714 5.93137 5.96242 6.02153 6.13518 6.34645 6.40535 6.62175 6.71625 6.80155 7.06316 7.23739 7.57813 7.85164 8.01063 8.13442 8.25258 8.80283 9.16269 9.70027 11.20226 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017097 B = 0.008771 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.278994 B = 3191.499323 C = 4164.863535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 N -0.508 5.508 4 C 0.153 3.847 5 C -0.492 4.492 6 H 0.077 0.923 7 C 0.066 3.934 8 N -0.907 5.907 9 Si 0.871 3.129 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.126 3.874 14 H 0.092 0.908 15 C -0.180 4.180 16 C 0.098 3.902 17 C 0.047 3.953 18 N -0.443 5.443 19 C 0.055 3.945 20 C -0.095 4.095 21 C 0.054 3.946 22 N -0.386 5.386 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.021 0.979 27 H 0.090 0.910 28 H 0.065 0.935 29 H -0.025 1.025 30 H 0.260 0.740 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.163 0.837 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 7.229 12.623 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 N -0.231 5.231 4 C 0.028 3.972 5 C -0.531 4.531 6 H 0.095 0.905 7 C -0.134 4.134 8 N -0.547 5.547 9 Si 0.699 3.301 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.191 1.191 13 C 0.015 3.985 14 H 0.110 0.890 15 C -0.239 4.239 16 C -0.043 4.043 17 C -0.114 4.114 18 N -0.159 5.159 19 C -0.085 4.085 20 C -0.153 4.153 21 C -0.106 4.106 22 N -0.100 5.100 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.109 0.891 28 H 0.083 0.917 29 H -0.007 1.007 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.180 0.820 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.602 7.482 12.121 15.306 hybrid contribution 1.442 -0.313 0.884 1.720 sum -4.160 7.169 13.005 15.421 Atomic orbital electron populations 1.21783 0.96487 1.00501 1.01288 1.22079 0.94470 0.90000 1.01262 1.62149 1.25138 1.16811 1.19005 1.20505 0.83205 0.97644 0.95888 1.21040 0.94854 1.44878 0.92298 0.90514 1.24834 0.98507 0.95378 0.94659 1.69899 1.25677 1.50534 1.08621 0.86925 0.84085 0.78913 0.80191 1.20717 1.21414 1.19144 1.20542 0.98662 0.87561 0.91747 0.89033 1.22442 1.00701 1.01616 0.99163 1.22326 0.93509 0.97858 0.90611 1.23383 0.98985 0.89541 0.99487 1.68216 1.12976 1.12873 1.21822 1.22238 0.95823 0.98307 0.92122 1.20609 1.02807 0.88576 1.03350 1.23830 0.97786 0.90147 0.98826 1.68721 1.10352 1.11447 1.19435 0.92032 0.93248 0.94035 0.96037 0.89135 0.91745 1.00728 0.92972 0.91625 0.91642 0.92743 0.82015 0.90375 0.90694 0.90461 0.81788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.95 37.16 0.37 -1.84 16 2 C 0.05 0.93 5.43 -3.82 -0.02 0.91 16 3 N -0.51 -10.54 4.16 -229.48 -0.96 -11.49 16 4 C 0.15 3.74 2.15 -4.98 -0.01 3.73 16 5 C -0.49 -14.16 8.83 -34.44 -0.30 -14.46 16 6 H 0.08 2.42 7.75 -52.49 -0.41 2.01 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.91 -28.27 13.96 55.43 0.77 -27.50 16 9 Si 0.87 22.13 27.47 -169.99 -4.67 17.46 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 13 C 0.13 2.12 2.46 -68.86 -0.17 1.95 16 14 H 0.09 1.31 6.61 -51.93 -0.34 0.97 16 15 C -0.18 -2.78 8.36 37.15 0.31 -2.47 16 16 C 0.10 1.69 5.82 -82.41 -0.48 1.21 16 17 C 0.05 0.69 10.91 -17.37 -0.19 0.50 16 18 N -0.44 -6.68 10.42 -9.28 -0.10 -6.78 16 19 C 0.06 0.79 6.79 -82.41 -0.56 0.23 16 20 C -0.10 -0.95 10.19 36.01 0.37 -0.58 16 21 C 0.05 0.89 10.88 -17.37 -0.19 0.70 16 22 N -0.39 -7.57 7.22 -9.28 -0.07 -7.64 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.56 6.92 -51.93 -0.36 0.20 16 26 H 0.02 0.37 6.54 -51.93 -0.34 0.03 16 27 H 0.09 1.96 6.80 -51.93 -0.35 1.60 16 28 H 0.06 1.63 4.43 -51.93 -0.23 1.40 16 29 H -0.02 -0.61 6.43 -51.93 -0.33 -0.95 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.06 0.96 6.76 -51.93 -0.35 0.61 16 32 H 0.06 1.18 6.58 -51.93 -0.34 0.84 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -33.15 303.26 -7.02 -40.17 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.60 Total: -0.52 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -0.97 Total: -8.28 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.35 Total: -53.40 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.15 -7.02 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331198996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.235 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds