Wall clock time and date at job start Mon Mar 30 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47090 * 2 1 4 4 C 1.46898 * 111.00022 * 199.92181 * 3 2 1 5 5 C 1.50700 * 109.46957 * 68.87353 * 4 3 2 6 6 H 1.07999 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99738 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99750 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00214 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47012 * 90.00205 * 9 7 5 11 11 H 1.48495 * 109.47326 * 210.00558 * 9 7 5 12 12 H 1.48503 * 109.47071 * 330.00506 * 9 7 5 13 13 C 1.46905 * 110.99850 * 75.97168 * 3 2 1 14 14 H 1.09001 * 109.46651 * 315.79965 * 13 3 2 15 15 C 1.52994 * 109.47418 * 75.80064 * 13 3 2 16 16 C 1.50702 * 109.46974 * 195.80161 * 13 3 2 17 17 C 1.38388 * 119.99781 * 156.59224 * 16 13 3 18 18 N 1.32135 * 119.99527 * 179.73671 * 17 16 13 19 19 C 1.32150 * 119.99747 * 0.53615 * 18 17 16 20 20 C 1.50700 * 120.00192 * 179.71226 * 19 18 17 21 21 C 1.38353 * 120.00348 * 359.74114 * 19 18 17 22 22 N 1.32124 * 120.00072 * 336.87037 * 16 13 3 23 23 H 1.09007 * 109.47276 * 54.71829 * 1 2 3 24 24 H 1.08995 * 109.47102 * 174.72033 * 1 2 3 25 25 H 1.09006 * 109.46889 * 294.71994 * 1 2 3 26 26 H 1.08998 * 109.47130 * 119.99998 * 2 1 3 27 27 H 1.08998 * 109.47253 * 240.00539 * 2 1 3 28 28 H 1.08999 * 109.47191 * 188.87316 * 4 3 2 29 29 H 1.09001 * 109.47397 * 308.87338 * 4 3 2 30 30 H 0.96994 * 120.00066 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47265 * 300.00638 * 15 13 3 32 32 H 1.09005 * 109.47291 * 59.99792 * 15 13 3 33 33 H 1.08997 * 109.47508 * 179.97438 * 15 13 3 34 34 H 1.07996 * 120.00294 * 0.02562 * 17 16 13 35 35 H 1.09003 * 109.47486 * 270.03087 * 20 19 18 36 36 H 1.09006 * 109.46457 * 30.02450 * 20 19 18 37 37 H 1.09000 * 109.47726 * 150.02118 * 20 19 18 38 38 H 1.08001 * 119.99837 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4107 1.4516 -0.4673 5 6 3.4639 1.1166 -1.9356 6 1 2.5553 0.8777 -2.4683 7 6 4.6728 1.1141 -2.5988 8 7 4.7193 0.8212 -3.8801 9 14 6.2445 1.5265 -1.6773 10 1 6.8312 0.2824 -1.1177 11 1 7.2143 2.1555 -2.6095 12 1 5.9373 2.4696 -0.5721 13 6 1.8817 1.9921 1.3306 14 1 0.9026 1.7468 1.7421 15 6 2.9737 1.4496 2.2545 16 6 2.0180 3.4886 1.2165 17 6 1.4658 4.3095 2.1841 18 7 1.5899 5.6214 2.0868 19 6 2.2321 6.1499 1.0598 20 6 2.3680 7.6464 0.9453 21 6 2.7791 5.3294 0.0894 22 7 2.6599 4.0171 0.1897 23 1 -0.3634 0.5936 -0.8389 24 1 -0.3633 -1.0233 -0.0946 25 1 -0.3633 0.4298 0.9336 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 3.7991 2.4578 -0.3099 29 1 4.0160 0.7370 0.0905 30 1 5.5697 0.8198 -4.3467 31 1 2.8752 0.3671 2.3370 32 1 3.9529 1.6948 1.8430 33 1 2.8717 1.9003 3.2416 34 1 0.9376 3.8777 3.0213 35 1 1.5208 8.0467 0.3883 36 1 2.3880 8.0867 1.9423 37 1 3.2934 7.8883 0.4227 38 1 3.3035 5.7615 -0.7501 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331198996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:37 Heat of formation + Delta-G solvation = 34.291384 kcal Electronic energy + Delta-G solvation = -18734.828813 eV Core-core repulsion = 15997.898541 eV Total energy + Delta-G solvation = -2736.930272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.14059 -39.26538 -35.41217 -34.76889 -34.03303 -32.29452 -31.33978 -28.49436 -28.16376 -25.58021 -24.88938 -23.79951 -22.97099 -20.51645 -19.07015 -18.50263 -17.50883 -16.76958 -16.52493 -16.02943 -15.76885 -15.56313 -15.02535 -14.68957 -14.48839 -14.16452 -14.05986 -13.57708 -13.26564 -13.21513 -13.10285 -12.87246 -12.70735 -12.50103 -12.38124 -12.16839 -12.01321 -11.91271 -11.73249 -11.41479 -11.26293 -10.72371 -9.90197 -9.73210 -8.86228 -8.22887 -6.20124 -0.12580 0.28090 1.29791 1.32453 1.44372 2.36364 2.76270 3.10955 3.15391 3.20436 3.35449 3.66780 3.83488 4.10759 4.18876 4.30921 4.33399 4.41486 4.51039 4.59895 4.70962 4.73199 4.79238 4.83732 4.88914 4.99437 5.08553 5.13698 5.21254 5.25603 5.39918 5.47675 5.53413 5.79234 6.08042 6.40718 6.58530 6.75201 6.84708 7.02214 7.40674 8.94832 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017097 B = 0.008771 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.278994 B = 3191.499323 C = 4164.863535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.049 3.951 3 N -0.528 5.528 4 C 0.172 3.828 5 C -0.494 4.494 6 H 0.031 0.969 7 C 0.007 3.993 8 N -0.954 5.954 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.257 1.257 13 C 0.125 3.875 14 H 0.123 0.877 15 C -0.174 4.174 16 C 0.074 3.926 17 C 0.060 3.940 18 N -0.454 5.454 19 C 0.064 3.936 20 C -0.093 4.093 21 C 0.033 3.967 22 N -0.439 5.439 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.062 0.938 29 H -0.029 1.029 30 H 0.263 0.737 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.088 0.912 34 H 0.200 0.800 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 8.408 15.689 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.078 4.078 3 N -0.251 5.251 4 C 0.045 3.955 5 C -0.533 4.533 6 H 0.049 0.951 7 C -0.189 4.189 8 N -0.597 5.597 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.181 1.181 13 C 0.015 3.985 14 H 0.141 0.859 15 C -0.233 4.233 16 C -0.067 4.067 17 C -0.100 4.100 18 N -0.169 5.169 19 C -0.076 4.076 20 C -0.151 4.151 21 C -0.127 4.127 22 N -0.153 5.153 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.079 0.921 29 H -0.012 1.012 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.217 0.783 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.975 8.666 15.207 18.495 hybrid contribution 1.430 -0.654 -0.089 1.575 sum -4.545 8.013 15.117 17.703 Atomic orbital electron populations 1.21691 0.93729 1.01724 1.01815 1.22062 0.96681 0.89006 1.00088 1.61974 1.22643 1.18081 1.22428 1.20135 0.85729 0.96896 0.92718 1.21308 0.93213 1.44040 0.94701 0.95108 1.25705 1.02319 0.95419 0.95472 1.70057 1.26754 1.52334 1.10521 0.85801 0.79418 0.79163 0.79023 1.19598 1.20777 1.18081 1.20730 1.00678 0.87351 0.89717 0.85925 1.22380 0.98368 1.02188 1.00321 1.22481 0.94718 0.98220 0.91267 1.23855 0.97582 0.89201 0.99399 1.68374 1.13424 1.13061 1.22080 1.22775 0.93899 1.00047 0.90853 1.20738 1.04318 0.85583 1.04417 1.24078 0.98923 0.89595 1.00115 1.68505 1.12080 1.13385 1.21319 0.94189 0.91206 0.91207 0.93986 0.93453 0.92074 1.01182 0.92814 0.90997 0.94710 0.89363 0.78317 0.88988 0.89745 0.88693 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.95 71.98 0.72 -3.18 16 2 C 0.05 1.84 5.43 86.30 0.47 2.31 16 3 N -0.53 -21.91 4.16 -879.93 -3.66 -25.57 16 4 C 0.17 8.55 2.15 85.56 0.18 8.73 16 5 C -0.49 -29.74 8.83 25.60 0.23 -29.51 16 6 H 0.03 2.08 7.75 -2.91 -0.02 2.05 16 7 C 0.01 0.40 5.47 84.66 0.46 0.86 16 8 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 9 Si 0.94 46.64 27.47 68.60 1.88 48.53 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 13 C 0.13 3.95 2.46 44.17 0.11 4.05 16 14 H 0.12 3.04 6.61 -2.39 -0.02 3.02 16 15 C -0.17 -4.92 8.36 71.98 0.60 -4.31 16 16 C 0.07 2.43 5.82 42.55 0.25 2.67 16 17 C 0.06 1.57 10.91 84.68 0.92 2.50 16 18 N -0.45 -12.42 10.42 -183.29 -1.91 -14.33 16 19 C 0.06 1.70 6.79 42.54 0.29 1.98 16 20 C -0.09 -1.59 10.19 71.24 0.73 -0.86 16 21 C 0.03 1.05 10.88 84.67 0.92 1.97 16 22 N -0.44 -17.09 7.22 -183.29 -1.32 -18.41 16 23 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.66 6.92 -2.38 -0.02 1.65 16 26 H 0.04 1.38 6.54 -2.39 -0.02 1.36 16 27 H 0.05 2.15 6.80 -2.39 -0.02 2.13 16 28 H 0.06 3.13 4.43 -2.39 -0.01 3.12 16 29 H -0.03 -1.46 6.43 -2.39 -0.02 -1.48 16 30 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 31 H 0.07 1.91 6.76 -2.39 -0.02 1.90 16 32 H 0.03 1.19 6.58 -2.38 -0.02 1.17 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.20 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 38 H 0.17 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -75.60 303.26 2.15 -73.46 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.99 Total: 10.62 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 5.88 Total: -12.78 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -6.60 Total: -119.82 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.53 kcal Total: -75.60 2.15 -73.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331198996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.746 kcal (2) G-P(sol) polarization free energy of solvation -75.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds