Wall clock time and date at job start Mon Mar 30 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46825 * 239.99991 * 3 2 1 5 5 H 1.48499 * 109.47320 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46801 * 120.00085 * 3 2 1 7 7 C 1.37876 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99763 * 170.38442 * 7 2 1 9 9 C 1.50697 * 120.00183 * 350.37738 * 7 2 1 10 10 C 1.52997 * 115.55198 * 324.92058 * 9 7 2 11 11 N 1.46900 * 109.47003 * 301.40699 * 10 9 7 12 12 C 1.46903 * 111.00061 * 184.75477 * 11 10 9 13 13 H 1.09000 * 109.47340 * 328.27863 * 12 11 10 14 14 C 1.53009 * 109.47109 * 88.27483 * 12 11 10 15 15 C 1.52993 * 109.46886 * 120.00265 * 14 12 11 16 16 C 1.53005 * 109.47317 * 299.99683 * 15 14 12 17 17 C 1.52999 * 109.46858 * 60.00226 * 16 15 14 18 18 C 1.52995 * 109.47327 * 208.27369 * 12 11 10 19 19 C 1.53003 * 109.47021 * 180.02562 * 18 12 11 20 20 C 1.52997 * 109.47615 * 60.00331 * 15 14 12 21 21 C 1.52997 * 117.49933 * 110.59144 * 9 7 2 22 22 C 1.53008 * 117.49768 * 179.24998 * 9 7 2 23 23 H 0.96998 * 119.99566 * 5.00711 * 1 2 3 24 24 H 1.09002 * 109.47053 * 61.40068 * 10 9 7 25 25 H 1.08998 * 109.47447 * 181.40619 * 10 9 7 26 26 H 1.00904 * 111.00229 * 308.70836 * 11 10 9 27 27 H 1.08997 * 109.46799 * 240.00427 * 14 12 11 28 28 H 1.09003 * 109.46871 * 0.02562 * 14 12 11 29 29 H 1.09007 * 109.47003 * 180.02562 * 15 14 12 30 30 H 1.09003 * 109.47259 * 300.00686 * 16 15 14 31 31 H 1.08994 * 109.47337 * 180.02562 * 16 15 14 32 32 H 1.08994 * 109.47258 * 240.00002 * 17 16 15 33 33 H 1.09003 * 109.47074 * 119.99579 * 17 16 15 34 34 H 1.09005 * 109.47295 * 60.00510 * 18 12 11 35 35 H 1.09000 * 109.46854 * 180.02562 * 19 18 12 36 36 H 1.09003 * 109.47278 * 299.99839 * 19 18 12 37 37 H 1.08997 * 109.47175 * 59.99161 * 20 15 14 38 38 H 1.08994 * 109.47586 * 180.02562 * 20 15 14 39 39 H 1.08994 * 117.50358 * 215.00525 * 21 9 7 40 40 H 1.09005 * 117.49793 * 0.02562 * 21 9 7 41 41 H 1.08995 * 117.49971 * 359.97438 * 22 9 7 42 42 H 1.08997 * 117.49277 * 144.97598 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0732 -1.2006 -0.1568 9 6 1.2669 -2.4901 0.2170 10 6 0.0873 -2.4229 1.1891 11 7 0.5596 -1.9599 2.5008 12 6 -0.5246 -1.9902 3.4915 13 1 -1.4752 -1.7928 2.9960 14 6 -0.5716 -3.3685 4.1542 15 6 -0.3510 -3.2178 5.6607 16 6 1.0146 -2.5762 5.9145 17 6 1.0616 -1.1979 5.2518 18 6 -0.2727 -0.9208 4.5563 19 6 -1.4017 -0.9529 5.5884 20 6 -1.4490 -2.3307 6.2508 21 6 1.1476 -3.4435 -0.9735 22 6 2.0855 -3.7824 0.1878 23 1 -0.4849 0.8369 -0.0733 24 1 -0.6600 -1.7279 0.8061 25 1 -0.3561 -3.4133 1.2915 26 1 1.3501 -2.5037 2.8132 27 1 -1.5444 -3.8256 3.9734 28 1 0.2110 -4.0005 3.7342 29 1 -0.3840 -4.1998 6.1327 30 1 1.7969 -3.2083 5.4941 31 1 1.1720 -2.4692 6.9877 32 1 1.8660 -1.1754 4.5168 33 1 1.2410 -0.4360 6.0104 34 1 -0.2393 0.0612 4.0842 35 1 -1.2224 -0.1906 6.3467 36 1 -2.3525 -0.7556 5.0932 37 1 -2.4218 -2.7878 6.0699 38 1 -1.2916 -2.2229 7.3239 39 1 0.2288 -4.0229 -1.0644 40 1 1.6031 -3.1336 -1.9141 41 1 3.1574 -3.6952 0.0107 42 1 1.7838 -4.5845 0.8614 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381564547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:08 Heat of formation + Delta-G solvation = 7.385621 kcal Electronic energy + Delta-G solvation = -19568.073158 eV Core-core repulsion = 16933.516508 eV Total energy + Delta-G solvation = -2634.556650 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14373 -36.77495 -33.62578 -31.95466 -31.00930 -30.55809 -28.46605 -25.42323 -23.87752 -22.25161 -21.81916 -21.20870 -20.77567 -18.87786 -16.67823 -16.15071 -15.81751 -15.35773 -15.06691 -14.56549 -13.98141 -13.17623 -13.01938 -12.83300 -12.31594 -11.93585 -11.80792 -11.77397 -11.66265 -11.64817 -11.33064 -11.21357 -11.08337 -10.82807 -10.56649 -10.39700 -10.37271 -10.04268 -9.64338 -9.57442 -9.43827 -9.07504 -8.90391 -8.59823 -7.91939 -7.09226 -5.81253 -3.86983 3.40105 3.44453 3.48924 4.52146 4.80472 4.86824 4.94752 5.10352 5.36566 5.53840 5.57825 5.64191 5.67477 5.69119 5.71101 5.72973 5.76027 5.85530 5.98081 6.10569 6.18925 6.21634 6.33612 6.36857 6.45503 6.47497 6.56830 6.63402 6.71082 6.76064 6.76511 6.80757 6.90763 6.96386 7.01671 7.25488 7.39660 7.76347 8.17769 8.36104 8.49795 8.74065 9.06722 9.73299 11.17608 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021824 B = 0.008008 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.654571 B = 3495.760531 C = 4165.095013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.090 3.910 3 Si 0.891 3.109 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.480 4.480 8 H 0.052 0.948 9 C 0.064 3.936 10 C 0.101 3.899 11 N -0.649 5.649 12 C 0.100 3.900 13 H 0.068 0.932 14 C -0.141 4.141 15 C -0.082 4.082 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.071 4.071 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.208 4.208 22 C -0.220 4.220 23 H 0.257 0.743 24 H 0.120 0.880 25 H -0.023 1.023 26 H 0.323 0.677 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.573 -4.031 11.131 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.114 4.114 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.517 4.517 8 H 0.071 0.929 9 C 0.063 3.937 10 C -0.027 4.027 11 N -0.277 5.277 12 C -0.011 4.011 13 H 0.086 0.914 14 C -0.181 4.181 15 C -0.101 4.101 16 C -0.149 4.149 17 C -0.148 4.148 18 C -0.090 4.090 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.246 4.246 22 C -0.257 4.257 23 H 0.068 0.932 24 H 0.138 0.862 25 H -0.005 1.005 26 H 0.141 0.859 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.827 -3.208 11.028 11.828 hybrid contribution 0.413 -0.315 0.077 0.526 sum -2.413 -3.524 11.106 11.899 Atomic orbital electron populations 1.69714 1.05970 1.26151 1.49042 1.24741 0.94533 0.98424 0.93669 0.86703 0.79644 0.83373 0.78325 1.20881 1.21561 1.20167 1.20265 0.93117 0.89084 1.49268 0.92934 1.19019 0.93703 0.88292 0.92700 1.21768 0.98468 0.95008 0.87454 1.60293 1.06199 1.59653 1.01543 1.21420 0.95888 0.91775 0.92042 0.91369 1.22442 1.01076 0.99290 0.95243 1.20984 0.95268 0.97832 0.96016 1.21529 0.96465 0.97303 0.99596 1.21459 0.98594 0.95591 0.99175 1.20963 0.93723 0.99878 0.94447 1.21546 0.99037 0.96444 0.98181 1.21504 0.98193 0.96085 0.98992 1.22949 0.99264 1.07902 0.94504 1.22908 0.96802 1.02722 1.03299 0.93246 0.86248 1.00529 0.85875 0.92812 0.92211 0.92287 0.92399 0.92873 0.90655 0.93135 0.90603 0.92505 0.92361 0.92583 0.92674 0.92075 0.90569 0.90922 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 10.63 55.43 0.59 -23.33 16 2 C 0.09 2.43 5.27 -17.82 -0.09 2.33 16 3 Si 0.89 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.48 -13.07 8.82 -34.44 -0.30 -13.38 16 8 H 0.05 1.45 7.83 -52.48 -0.41 1.04 16 9 C 0.06 1.57 1.95 -155.66 -0.30 1.27 16 10 C 0.10 2.36 4.62 -3.83 -0.02 2.34 16 11 N -0.65 -13.53 5.46 -106.72 -0.58 -14.11 16 12 C 0.10 1.76 2.43 -67.71 -0.16 1.60 16 13 H 0.07 1.31 7.81 -51.93 -0.41 0.90 16 14 C -0.14 -2.15 5.29 -26.73 -0.14 -2.29 16 15 C -0.08 -1.08 3.19 -90.62 -0.29 -1.37 16 16 C -0.11 -1.47 5.71 -26.73 -0.15 -1.63 16 17 C -0.11 -1.66 5.46 -26.73 -0.15 -1.81 16 18 C -0.07 -1.14 2.91 -90.62 -0.26 -1.41 16 19 C -0.11 -1.53 5.70 -26.76 -0.15 -1.69 16 20 C -0.11 -1.35 5.71 -26.76 -0.15 -1.50 16 21 C -0.21 -4.82 9.95 -26.69 -0.27 -5.08 16 22 C -0.22 -4.86 9.94 -26.69 -0.27 -5.12 16 23 H 0.26 6.86 8.32 -40.82 -0.34 6.53 16 24 H 0.12 3.13 5.72 -51.93 -0.30 2.83 16 25 H -0.02 -0.52 8.03 -51.93 -0.42 -0.94 16 26 H 0.32 6.62 7.45 -39.29 -0.29 6.33 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.96 7.46 -51.93 -0.39 0.57 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.28 7.30 -51.93 -0.38 0.90 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -26.62 317.81 -10.58 -37.20 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.64 Total: 6.77 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -2.71 Total: -27.72 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.01 Total: -37.44 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.62 -10.58 -37.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381564547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.586 kcal (2) G-P(sol) polarization free energy of solvation -26.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds