Wall clock time and date at job start Mon Mar 30 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46825 * 239.99991 * 3 2 1 5 5 H 1.48499 * 109.47320 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46801 * 120.00085 * 3 2 1 7 7 C 1.37876 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99763 * 170.38442 * 7 2 1 9 9 C 1.50697 * 120.00183 * 350.37738 * 7 2 1 10 10 C 1.52997 * 115.55198 * 324.92058 * 9 7 2 11 11 N 1.46900 * 109.47003 * 301.40699 * 10 9 7 12 12 C 1.46903 * 111.00061 * 184.75477 * 11 10 9 13 13 H 1.09000 * 109.47340 * 328.27863 * 12 11 10 14 14 C 1.53009 * 109.47109 * 88.27483 * 12 11 10 15 15 C 1.52993 * 109.46886 * 120.00265 * 14 12 11 16 16 C 1.53005 * 109.47317 * 299.99683 * 15 14 12 17 17 C 1.52999 * 109.46858 * 60.00226 * 16 15 14 18 18 C 1.52995 * 109.47327 * 208.27369 * 12 11 10 19 19 C 1.53003 * 109.47021 * 180.02562 * 18 12 11 20 20 C 1.52997 * 109.47615 * 60.00331 * 15 14 12 21 21 C 1.52997 * 117.49933 * 110.59144 * 9 7 2 22 22 C 1.53008 * 117.49768 * 179.24998 * 9 7 2 23 23 H 0.96998 * 119.99566 * 5.00711 * 1 2 3 24 24 H 1.09002 * 109.47053 * 61.40068 * 10 9 7 25 25 H 1.08998 * 109.47447 * 181.40619 * 10 9 7 26 26 H 1.00904 * 111.00229 * 308.70836 * 11 10 9 27 27 H 1.08997 * 109.46799 * 240.00427 * 14 12 11 28 28 H 1.09003 * 109.46871 * 0.02562 * 14 12 11 29 29 H 1.09007 * 109.47003 * 180.02562 * 15 14 12 30 30 H 1.09003 * 109.47259 * 300.00686 * 16 15 14 31 31 H 1.08994 * 109.47337 * 180.02562 * 16 15 14 32 32 H 1.08994 * 109.47258 * 240.00002 * 17 16 15 33 33 H 1.09003 * 109.47074 * 119.99579 * 17 16 15 34 34 H 1.09005 * 109.47295 * 60.00510 * 18 12 11 35 35 H 1.09000 * 109.46854 * 180.02562 * 19 18 12 36 36 H 1.09003 * 109.47278 * 299.99839 * 19 18 12 37 37 H 1.08997 * 109.47175 * 59.99161 * 20 15 14 38 38 H 1.08994 * 109.47586 * 180.02562 * 20 15 14 39 39 H 1.08994 * 117.50358 * 215.00525 * 21 9 7 40 40 H 1.09005 * 117.49793 * 0.02562 * 21 9 7 41 41 H 1.08995 * 117.49971 * 359.97438 * 22 9 7 42 42 H 1.08997 * 117.49277 * 144.97598 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0732 -1.2006 -0.1568 9 6 1.2669 -2.4901 0.2170 10 6 0.0873 -2.4229 1.1891 11 7 0.5596 -1.9599 2.5008 12 6 -0.5246 -1.9902 3.4915 13 1 -1.4752 -1.7928 2.9960 14 6 -0.5716 -3.3685 4.1542 15 6 -0.3510 -3.2178 5.6607 16 6 1.0146 -2.5762 5.9145 17 6 1.0616 -1.1979 5.2518 18 6 -0.2727 -0.9208 4.5563 19 6 -1.4017 -0.9529 5.5884 20 6 -1.4490 -2.3307 6.2508 21 6 1.1476 -3.4435 -0.9735 22 6 2.0855 -3.7824 0.1878 23 1 -0.4849 0.8369 -0.0733 24 1 -0.6600 -1.7279 0.8061 25 1 -0.3561 -3.4133 1.2915 26 1 1.3501 -2.5037 2.8132 27 1 -1.5444 -3.8256 3.9734 28 1 0.2110 -4.0005 3.7342 29 1 -0.3840 -4.1998 6.1327 30 1 1.7969 -3.2083 5.4941 31 1 1.1720 -2.4692 6.9877 32 1 1.8660 -1.1754 4.5168 33 1 1.2410 -0.4360 6.0104 34 1 -0.2393 0.0612 4.0842 35 1 -1.2224 -0.1906 6.3467 36 1 -2.3525 -0.7556 5.0932 37 1 -2.4218 -2.7878 6.0699 38 1 -1.2916 -2.2229 7.3239 39 1 0.2288 -4.0229 -1.0644 40 1 1.6031 -3.1336 -1.9141 41 1 3.1574 -3.6952 0.0107 42 1 1.7838 -4.5845 0.8614 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381564547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:07 Heat of formation + Delta-G solvation = -5.409882 kcal Electronic energy + Delta-G solvation = -19568.628012 eV Core-core repulsion = 16933.516508 eV Total energy + Delta-G solvation = -2635.111505 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36382 -38.60369 -35.17017 -34.02245 -32.17894 -31.63963 -29.90468 -27.46919 -25.57539 -23.35131 -23.13329 -22.85134 -22.16891 -20.81885 -18.36887 -17.37650 -17.26888 -16.61886 -16.53134 -16.37897 -15.71479 -14.89098 -14.68997 -14.27892 -13.65041 -13.50269 -13.14110 -13.00165 -12.87299 -12.83435 -12.79832 -12.78414 -12.73273 -12.47566 -12.40917 -12.25242 -11.96357 -11.55031 -11.17524 -10.92569 -10.77992 -10.67764 -10.61369 -10.43533 -9.89908 -8.72692 -7.86599 -5.99302 1.44513 1.48399 1.53475 2.50711 3.13433 3.52656 3.74678 3.76473 3.80201 3.99186 4.36434 4.40987 4.45053 4.46600 4.49568 4.54038 4.56098 4.61849 4.63439 4.69768 4.82485 4.83545 4.89296 4.94371 4.98036 5.13451 5.16695 5.19986 5.23543 5.37382 5.41286 5.48386 5.49406 5.55320 5.57905 5.64353 5.69318 5.71413 6.17673 6.48916 6.69927 7.00562 7.01910 7.62512 9.08379 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021824 B = 0.008008 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.654571 B = 3495.760531 C = 4165.095013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.052 3.948 3 Si 0.941 3.059 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.498 4.498 8 H 0.040 0.960 9 C 0.033 3.967 10 C 0.117 3.883 11 N -0.659 5.659 12 C 0.100 3.900 13 H 0.044 0.956 14 C -0.134 4.134 15 C -0.079 4.079 16 C -0.107 4.107 17 C -0.108 4.108 18 C -0.071 4.071 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.209 4.209 22 C -0.196 4.196 23 H 0.255 0.745 24 H 0.088 0.912 25 H -0.018 1.018 26 H 0.325 0.675 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -4.942 13.165 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.149 4.149 3 Si 0.769 3.231 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.012 4.012 11 N -0.288 5.288 12 C -0.011 4.011 13 H 0.062 0.938 14 C -0.174 4.174 15 C -0.097 4.097 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.090 4.090 19 C -0.148 4.148 20 C -0.143 4.143 21 C -0.248 4.248 22 C -0.233 4.233 23 H 0.064 0.936 24 H 0.106 0.894 25 H 0.000 1.000 26 H 0.143 0.857 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.754 -4.126 13.064 13.974 hybrid contribution 0.398 -0.029 -0.603 0.723 sum -2.356 -4.155 12.461 13.345 Atomic orbital electron populations 1.69867 1.06752 1.26349 1.49584 1.25287 0.95200 1.00785 0.93635 0.85905 0.78604 0.80459 0.78160 1.20485 1.21335 1.20263 1.20463 0.92745 0.90689 1.49619 0.94127 1.19136 0.95042 0.88468 0.94143 1.21408 0.97177 0.94296 0.88332 1.60216 1.07311 1.59843 1.01469 1.21432 0.93660 0.94195 0.91778 0.93789 1.22320 1.01082 0.97006 0.96954 1.20997 0.95410 0.99193 0.94136 1.21511 0.96582 0.95646 1.00724 1.21408 0.96708 0.97607 0.98826 1.20910 0.95892 0.97407 0.94784 1.21515 0.97418 0.98236 0.97647 1.21502 0.98277 0.94573 0.99994 1.22941 1.00180 1.07544 0.94110 1.22880 0.96557 1.01470 1.02395 0.93574 0.89435 0.99974 0.85704 0.92323 0.92982 0.90130 0.92661 0.90533 0.93346 0.91868 0.94040 0.91094 0.92836 0.91783 0.90434 0.90870 0.91374 0.90751 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.96 10.63 21.45 0.23 -49.74 16 2 C 0.05 2.88 5.27 84.65 0.45 3.33 16 3 Si 0.94 44.60 29.55 68.60 2.03 46.63 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.50 -27.52 8.82 25.60 0.23 -27.29 16 8 H 0.04 2.28 7.83 -2.91 -0.02 2.25 16 9 C 0.03 1.63 1.95 -52.93 -0.10 1.52 16 10 C 0.12 5.53 4.62 86.30 0.40 5.93 16 11 N -0.66 -28.04 5.46 -491.56 -2.68 -30.72 16 12 C 0.10 3.55 2.43 44.92 0.11 3.66 16 13 H 0.04 1.75 7.81 -2.39 -0.02 1.73 16 14 C -0.13 -3.89 5.29 30.60 0.16 -3.73 16 15 C -0.08 -1.81 3.19 -10.80 -0.03 -1.84 16 16 C -0.11 -2.53 5.71 30.60 0.17 -2.36 16 17 C -0.11 -3.12 5.46 30.59 0.17 -2.95 16 18 C -0.07 -2.27 2.91 -10.79 -0.03 -2.30 16 19 C -0.11 -2.77 5.70 30.58 0.17 -2.59 16 20 C -0.11 -2.22 5.71 30.58 0.17 -2.05 16 21 C -0.21 -9.62 9.95 30.62 0.30 -9.31 16 22 C -0.20 -8.42 9.94 30.62 0.30 -8.11 16 23 H 0.25 13.93 8.32 -92.71 -0.77 13.16 16 24 H 0.09 4.75 5.72 -2.39 -0.01 4.74 16 25 H -0.02 -0.79 8.03 -2.39 -0.02 -0.81 16 26 H 0.32 13.42 7.45 -89.69 -0.67 12.75 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.59 7.46 -2.39 -0.02 1.57 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.65 7.30 -2.39 -0.02 1.63 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 41 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -57.33 317.81 2.34 -54.98 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.30 Total: 26.95 kcal Atomic # 6 Polarization: -50.58 SS G_CDS: 2.47 Total: -48.10 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.46 Total: -80.46 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -57.33 2.34 -54.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381564547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.574 kcal (2) G-P(sol) polarization free energy of solvation -57.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds