Wall clock time and date at job start Mon Mar 30 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00376 * 2 1 4 4 H 1.48494 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46714 * 300.00318 * 3 2 1 6 6 H 1.48498 * 109.46822 * 60.00156 * 3 2 1 7 7 C 1.37886 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99442 * 184.29675 * 7 2 1 9 9 C 1.50692 * 120.00232 * 4.29473 * 7 2 1 10 10 C 1.53003 * 115.55095 * 324.38248 * 9 7 2 11 11 N 1.46895 * 109.47189 * 305.91305 * 10 9 7 12 12 C 1.46895 * 111.00192 * 185.11288 * 11 10 9 13 13 H 1.08994 * 109.47471 * 30.65139 * 12 11 10 14 14 C 1.53005 * 109.46894 * 270.65187 * 12 11 10 15 15 C 1.52999 * 109.47174 * 240.00070 * 14 12 11 16 16 C 1.52995 * 109.47196 * 299.99603 * 15 14 12 17 17 C 1.53005 * 109.46735 * 60.00128 * 16 15 14 18 18 C 1.52994 * 109.47076 * 0.02562 * 17 16 15 19 19 C 1.52998 * 109.47492 * 60.00023 * 18 17 16 20 20 C 1.52997 * 109.47330 * 60.00258 * 15 14 12 21 21 C 1.53005 * 117.50006 * 110.05185 * 9 7 2 22 22 C 1.52997 * 117.50066 * 178.71053 * 9 7 2 23 23 H 0.96994 * 119.99520 * 4.99805 * 1 2 3 24 24 H 1.09000 * 109.47278 * 185.90714 * 10 9 7 25 25 H 1.09002 * 109.46892 * 65.90809 * 10 9 7 26 26 H 1.00908 * 110.99587 * 309.06280 * 11 10 9 27 27 H 1.09003 * 109.46838 * 0.02562 * 14 12 11 28 28 H 1.09001 * 109.47197 * 120.00069 * 14 12 11 29 29 H 1.08999 * 109.46809 * 180.02562 * 15 14 12 30 30 H 1.08998 * 109.47320 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47299 * 300.00599 * 16 15 14 32 32 H 1.09003 * 109.47097 * 239.99572 * 17 16 15 33 33 H 1.09001 * 109.46893 * 119.99879 * 17 16 15 34 34 H 1.09011 * 109.46891 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47244 * 59.99744 * 19 18 17 36 36 H 1.09000 * 109.47030 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.47258 * 59.99510 * 20 15 14 38 38 H 1.08998 * 109.47152 * 180.02562 * 20 15 14 39 39 H 1.08998 * 117.49512 * 215.00705 * 21 9 7 40 40 H 1.08998 * 117.49857 * 0.02562 * 21 9 7 41 41 H 1.08999 * 117.49988 * 359.97438 * 22 9 7 42 42 H 1.08999 * 117.49741 * 144.97455 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0822 -1.1955 0.0695 9 6 1.2542 -2.4973 -0.0988 10 6 -0.0970 -2.5365 0.6180 11 7 0.0818 -2.1421 2.0216 12 6 -1.1729 -2.2843 2.7723 13 1 -1.7593 -3.0995 2.3487 14 6 -1.9709 -0.9819 2.6831 15 6 -2.1884 -0.4198 4.0894 16 6 -2.9632 -1.4360 4.9307 17 6 -2.1652 -2.7383 5.0198 18 6 -0.8581 -2.5900 4.2385 19 6 -0.0351 -1.4458 4.8337 20 6 -0.8332 -0.1436 4.7435 21 6 1.3875 -3.2930 -1.3989 22 6 2.0777 -3.7865 -0.1249 23 1 -0.4849 0.8368 -0.0732 24 1 -0.5027 -3.5472 0.5734 25 1 -0.7864 -1.8464 0.1316 26 1 0.8240 -2.6714 2.4543 27 1 -1.4191 -0.2581 2.0834 28 1 -2.9365 -1.1786 2.2171 29 1 -2.7574 0.5078 4.0258 30 1 -3.1186 -1.0353 5.9324 31 1 -3.9287 -1.6327 4.4646 32 1 -2.7517 -3.5536 4.5962 33 1 -1.9411 -2.9563 6.0641 34 1 -0.2898 -3.5181 4.3017 35 1 0.1886 -1.6641 5.8780 36 1 0.8963 -1.3405 4.2774 37 1 -0.2812 0.5805 4.1441 38 1 -0.9882 0.2565 5.7455 39 1 0.5127 -3.8442 -1.7435 40 1 2.0183 -2.8740 -2.1829 41 1 3.1623 -3.6920 -0.0713 42 1 1.6571 -4.6624 0.3690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381564548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:10 Heat of formation + Delta-G solvation = 10.850465 kcal Electronic energy + Delta-G solvation = -19721.997963 eV Core-core repulsion = 17087.591560 eV Total energy + Delta-G solvation = -2634.406403 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94854 -36.75876 -33.53139 -31.93860 -30.83818 -30.42877 -28.36308 -25.38155 -23.93468 -22.16322 -21.50606 -21.18464 -20.63862 -18.84098 -16.35659 -16.04871 -15.86853 -15.28461 -15.02190 -14.56726 -13.92916 -13.19167 -13.04653 -12.58435 -12.00406 -11.87543 -11.70993 -11.64834 -11.51996 -11.46697 -11.23998 -11.10755 -11.03613 -10.88881 -10.48443 -10.38085 -10.13814 -9.97186 -9.57259 -9.39279 -9.30639 -9.05344 -8.74127 -8.54594 -8.00839 -6.98395 -5.73541 -3.85597 3.37002 3.45872 3.49199 4.52483 4.91353 4.98640 5.06709 5.15113 5.47522 5.62608 5.66974 5.69331 5.75650 5.80426 5.83839 5.84840 5.98575 6.00890 6.11403 6.22257 6.27368 6.34670 6.40187 6.46396 6.52653 6.68691 6.70131 6.74488 6.77044 6.82941 6.86692 6.96984 7.00195 7.02224 7.25925 7.36602 7.44727 7.79289 8.18472 8.45448 8.55336 8.82124 9.09339 9.74919 11.19586 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.008691 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.965977 B = 3220.871515 C = 3969.457004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.089 3.911 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.478 4.478 8 H 0.052 0.948 9 C 0.060 3.940 10 C 0.113 3.887 11 N -0.636 5.636 12 C 0.102 3.898 13 H 0.022 0.978 14 C -0.106 4.106 15 C -0.084 4.084 16 C -0.112 4.112 17 C -0.109 4.109 18 C -0.088 4.088 19 C -0.103 4.103 20 C -0.104 4.104 21 C -0.211 4.211 22 C -0.220 4.220 23 H 0.252 0.748 24 H -0.031 1.031 25 H 0.116 0.884 26 H 0.318 0.682 27 H 0.106 0.894 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 -2.819 8.664 10.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.115 4.115 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.515 4.515 8 H 0.070 0.930 9 C 0.060 3.940 10 C -0.016 4.016 11 N -0.265 5.265 12 C -0.008 4.008 13 H 0.040 0.960 14 C -0.144 4.144 15 C -0.103 4.103 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.250 4.250 22 C -0.258 4.258 23 H 0.063 0.937 24 H -0.013 1.013 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.124 0.876 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.201 -2.003 8.602 10.250 hybrid contribution 0.426 -0.304 -0.027 0.524 sum -4.775 -2.307 8.575 10.083 Atomic orbital electron populations 1.69872 1.05543 1.25327 1.48671 1.24747 0.94614 0.98194 0.93901 0.86658 0.80128 0.84492 0.77259 1.20233 1.21491 1.21103 1.20320 0.91937 0.88736 1.50504 0.92991 1.19097 0.92965 0.89337 0.92646 1.21742 0.97903 0.93784 0.88132 1.60387 1.03717 1.60555 1.01864 1.21362 0.92490 0.95747 0.91239 0.95971 1.21714 0.98717 0.98870 0.95137 1.21034 0.95749 0.97348 0.96131 1.21543 0.98242 0.95825 0.99306 1.21488 0.96445 0.97397 0.99366 1.21232 0.95765 0.97998 0.95724 1.21381 0.99392 0.94364 0.98950 1.21407 0.95932 0.97787 0.99028 1.22971 1.01497 1.07616 0.92868 1.22916 0.98338 1.00579 1.03946 0.93707 1.01307 0.86623 0.86523 0.87574 0.94059 0.92275 0.92907 0.92656 0.92689 0.92654 0.92296 0.93616 0.90559 0.91610 0.93608 0.92069 0.90592 0.90945 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.49 9.23 55.43 0.51 -21.98 16 2 C 0.09 2.35 5.31 -17.82 -0.09 2.26 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.48 -12.79 8.74 -34.44 -0.30 -13.09 16 8 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 9 C 0.06 1.47 2.05 -155.66 -0.32 1.15 16 10 C 0.11 2.63 4.50 -3.82 -0.02 2.61 16 11 N -0.64 -13.43 4.91 -106.70 -0.52 -13.95 16 12 C 0.10 1.86 2.47 -67.69 -0.17 1.70 16 13 H 0.02 0.42 7.65 -51.93 -0.40 0.03 16 14 C -0.11 -1.95 5.47 -26.73 -0.15 -2.09 16 15 C -0.08 -1.30 3.19 -90.62 -0.29 -1.59 16 16 C -0.11 -1.49 5.71 -26.73 -0.15 -1.65 16 17 C -0.11 -1.46 5.71 -26.73 -0.15 -1.61 16 18 C -0.09 -1.37 2.54 -90.60 -0.23 -1.60 16 19 C -0.10 -1.61 5.54 -26.73 -0.15 -1.76 16 20 C -0.10 -1.63 5.71 -26.73 -0.15 -1.79 16 21 C -0.21 -4.83 9.96 -26.69 -0.27 -5.10 16 22 C -0.22 -4.86 9.92 -26.70 -0.26 -5.13 16 23 H 0.25 6.46 8.32 -40.82 -0.34 6.12 16 24 H -0.03 -0.70 7.87 -51.93 -0.41 -1.11 16 25 H 0.12 2.99 5.94 -51.93 -0.31 2.68 16 26 H 0.32 6.63 7.88 -39.29 -0.31 6.32 16 27 H 0.11 2.31 6.93 -51.93 -0.36 1.95 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.89 8.13 -51.92 -0.42 0.47 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.34 7.37 -51.93 -0.38 0.96 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -25.70 315.57 -10.61 -36.32 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.63 Total: 6.56 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -2.70 Total: -27.69 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.01 Total: -35.93 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.70 -10.61 -36.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381564548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.166 kcal (2) G-P(sol) polarization free energy of solvation -25.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds