Wall clock time and date at job start Mon Mar 30 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00376 * 2 1 4 4 H 1.48494 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46714 * 300.00318 * 3 2 1 6 6 H 1.48498 * 109.46822 * 60.00156 * 3 2 1 7 7 C 1.37886 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99442 * 184.29675 * 7 2 1 9 9 C 1.50692 * 120.00232 * 4.29473 * 7 2 1 10 10 C 1.53003 * 115.55095 * 324.38248 * 9 7 2 11 11 N 1.46895 * 109.47189 * 305.91305 * 10 9 7 12 12 C 1.46895 * 111.00192 * 185.11288 * 11 10 9 13 13 H 1.08994 * 109.47471 * 30.65139 * 12 11 10 14 14 C 1.53005 * 109.46894 * 270.65187 * 12 11 10 15 15 C 1.52999 * 109.47174 * 240.00070 * 14 12 11 16 16 C 1.52995 * 109.47196 * 299.99603 * 15 14 12 17 17 C 1.53005 * 109.46735 * 60.00128 * 16 15 14 18 18 C 1.52994 * 109.47076 * 0.02562 * 17 16 15 19 19 C 1.52998 * 109.47492 * 60.00023 * 18 17 16 20 20 C 1.52997 * 109.47330 * 60.00258 * 15 14 12 21 21 C 1.53005 * 117.50006 * 110.05185 * 9 7 2 22 22 C 1.52997 * 117.50066 * 178.71053 * 9 7 2 23 23 H 0.96994 * 119.99520 * 4.99805 * 1 2 3 24 24 H 1.09000 * 109.47278 * 185.90714 * 10 9 7 25 25 H 1.09002 * 109.46892 * 65.90809 * 10 9 7 26 26 H 1.00908 * 110.99587 * 309.06280 * 11 10 9 27 27 H 1.09003 * 109.46838 * 0.02562 * 14 12 11 28 28 H 1.09001 * 109.47197 * 120.00069 * 14 12 11 29 29 H 1.08999 * 109.46809 * 180.02562 * 15 14 12 30 30 H 1.08998 * 109.47320 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47299 * 300.00599 * 16 15 14 32 32 H 1.09003 * 109.47097 * 239.99572 * 17 16 15 33 33 H 1.09001 * 109.46893 * 119.99879 * 17 16 15 34 34 H 1.09011 * 109.46891 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47244 * 59.99744 * 19 18 17 36 36 H 1.09000 * 109.47030 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.47258 * 59.99510 * 20 15 14 38 38 H 1.08998 * 109.47152 * 180.02562 * 20 15 14 39 39 H 1.08998 * 117.49512 * 215.00705 * 21 9 7 40 40 H 1.08998 * 117.49857 * 0.02562 * 21 9 7 41 41 H 1.08999 * 117.49988 * 359.97438 * 22 9 7 42 42 H 1.08999 * 117.49741 * 144.97455 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0822 -1.1955 0.0695 9 6 1.2542 -2.4973 -0.0988 10 6 -0.0970 -2.5365 0.6180 11 7 0.0818 -2.1421 2.0216 12 6 -1.1729 -2.2843 2.7723 13 1 -1.7593 -3.0995 2.3487 14 6 -1.9709 -0.9819 2.6831 15 6 -2.1884 -0.4198 4.0894 16 6 -2.9632 -1.4360 4.9307 17 6 -2.1652 -2.7383 5.0198 18 6 -0.8581 -2.5900 4.2385 19 6 -0.0351 -1.4458 4.8337 20 6 -0.8332 -0.1436 4.7435 21 6 1.3875 -3.2930 -1.3989 22 6 2.0777 -3.7865 -0.1249 23 1 -0.4849 0.8368 -0.0732 24 1 -0.5027 -3.5472 0.5734 25 1 -0.7864 -1.8464 0.1316 26 1 0.8240 -2.6714 2.4543 27 1 -1.4191 -0.2581 2.0834 28 1 -2.9365 -1.1786 2.2171 29 1 -2.7574 0.5078 4.0258 30 1 -3.1186 -1.0353 5.9324 31 1 -3.9287 -1.6327 4.4646 32 1 -2.7517 -3.5536 4.5962 33 1 -1.9411 -2.9563 6.0641 34 1 -0.2898 -3.5181 4.3017 35 1 0.1886 -1.6641 5.8780 36 1 0.8963 -1.3405 4.2774 37 1 -0.2812 0.5805 4.1441 38 1 -0.9882 0.2565 5.7455 39 1 0.5127 -3.8442 -1.7435 40 1 2.0183 -2.8740 -2.1829 41 1 3.1623 -3.6920 -0.0713 42 1 1.6571 -4.6624 0.3690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381564548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:10 Heat of formation + Delta-G solvation = -0.825000 kcal Electronic energy + Delta-G solvation = -19722.504249 eV Core-core repulsion = 17087.591560 eV Total energy + Delta-G solvation = -2634.912689 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24309 -38.58368 -35.11459 -33.95693 -32.10833 -31.59122 -29.87344 -27.39320 -25.65223 -23.34182 -22.95933 -22.78614 -22.08702 -20.76142 -18.17928 -17.34116 -17.19860 -16.70025 -16.52673 -16.41767 -15.66413 -14.87102 -14.64978 -14.18390 -13.57052 -13.40206 -13.05665 -12.91438 -12.86024 -12.82176 -12.77618 -12.74475 -12.66058 -12.40837 -12.32274 -12.23437 -11.90202 -11.46664 -11.19081 -10.73442 -10.65959 -10.62610 -10.50092 -10.42587 -9.95337 -8.66159 -7.74271 -5.92803 1.44339 1.49319 1.56493 2.53789 3.18900 3.57740 3.76520 3.77353 3.86804 4.02902 4.37772 4.41372 4.50737 4.52546 4.58638 4.59971 4.61530 4.67377 4.73169 4.76159 4.82300 4.83793 4.93177 4.98142 5.05974 5.15315 5.18518 5.24772 5.26715 5.43823 5.48386 5.54656 5.56679 5.57071 5.65870 5.72354 5.74757 5.88009 6.19825 6.52703 6.79302 7.07394 7.10421 7.68255 9.14523 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.008691 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.965977 B = 3220.871515 C = 3969.457004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.056 3.944 3 Si 0.935 3.065 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.497 4.497 8 H 0.036 0.964 9 C 0.031 3.969 10 C 0.127 3.873 11 N -0.644 5.644 12 C 0.102 3.898 13 H 0.014 0.986 14 C -0.104 4.104 15 C -0.082 4.082 16 C -0.106 4.106 17 C -0.105 4.105 18 C -0.084 4.084 19 C -0.101 4.101 20 C -0.103 4.103 21 C -0.211 4.211 22 C -0.200 4.200 23 H 0.250 0.750 24 H -0.028 1.028 25 H 0.088 0.912 26 H 0.318 0.682 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 -3.492 10.506 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.147 4.147 3 Si 0.763 3.237 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.002 4.002 11 N -0.273 5.273 12 C -0.008 4.008 13 H 0.032 0.968 14 C -0.142 4.142 15 C -0.101 4.101 16 C -0.144 4.144 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.138 4.138 20 C -0.140 4.140 21 C -0.249 4.249 22 C -0.237 4.237 23 H 0.060 0.940 24 H -0.010 1.010 25 H 0.106 0.894 26 H 0.135 0.865 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.821 -2.680 10.442 12.252 hybrid contribution 0.629 -0.088 -0.643 0.904 sum -5.192 -2.767 9.799 11.430 Atomic orbital electron populations 1.70009 1.05990 1.25477 1.48490 1.25236 0.95335 1.00221 0.93938 0.85890 0.78981 0.81785 0.76997 1.20451 1.21235 1.21274 1.20421 0.91360 0.90262 1.51387 0.94543 1.19197 0.93944 0.89583 0.94189 1.21424 0.96638 0.93009 0.89113 1.60298 1.05112 1.60685 1.01214 1.21418 0.91064 0.95356 0.92989 0.96759 1.21618 0.97880 0.98057 0.96663 1.21013 0.96179 0.98226 0.94660 1.21516 0.97936 0.95007 0.99937 1.21486 0.94955 0.97577 1.00267 1.21206 0.97271 0.98061 0.93765 1.21346 0.98107 0.94354 1.00013 1.21388 0.95599 0.97250 0.99784 1.22972 1.02003 1.07343 0.92628 1.22888 0.98172 0.99803 1.02829 0.93988 1.01037 0.89422 0.86520 0.91450 0.94352 0.91922 0.90674 0.92087 0.92157 0.90343 0.91763 0.91046 0.93307 0.94754 0.91072 0.90861 0.91188 0.90864 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.44 9.23 21.45 0.20 -46.24 16 2 C 0.06 2.98 5.31 84.66 0.45 3.43 16 3 Si 0.94 43.90 29.54 68.60 2.03 45.93 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.50 -27.05 8.74 25.60 0.22 -26.83 16 8 H 0.04 2.04 7.82 -2.91 -0.02 2.02 16 9 C 0.03 1.55 2.05 -52.93 -0.11 1.44 16 10 C 0.13 6.00 4.50 86.31 0.39 6.39 16 11 N -0.64 -27.55 4.91 -491.50 -2.41 -29.96 16 12 C 0.10 3.68 2.47 44.93 0.11 3.80 16 13 H 0.01 0.54 7.65 -2.39 -0.02 0.53 16 14 C -0.10 -3.83 5.47 30.60 0.17 -3.66 16 15 C -0.08 -2.43 3.19 -10.80 -0.03 -2.46 16 16 C -0.11 -2.49 5.71 30.59 0.17 -2.32 16 17 C -0.10 -2.44 5.71 30.59 0.17 -2.26 16 18 C -0.08 -2.44 2.54 -10.78 -0.03 -2.47 16 19 C -0.10 -2.97 5.54 30.60 0.17 -2.80 16 20 C -0.10 -3.08 5.71 30.59 0.17 -2.91 16 21 C -0.21 -9.58 9.96 30.62 0.30 -9.27 16 22 C -0.20 -8.61 9.92 30.62 0.30 -8.30 16 23 H 0.25 13.14 8.32 -92.71 -0.77 12.37 16 24 H -0.03 -1.28 7.87 -2.39 -0.02 -1.30 16 25 H 0.09 4.66 5.94 -2.39 -0.01 4.65 16 26 H 0.32 13.35 7.88 -89.69 -0.71 12.65 16 27 H 0.07 3.04 6.93 -2.39 -0.02 3.02 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.80 8.13 -2.38 -0.02 1.78 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.70 7.37 -2.39 -0.02 1.68 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -55.33 315.57 2.55 -52.78 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.26 Total: 25.72 kcal Atomic # 6 Polarization: -50.70 SS G_CDS: 2.47 Total: -48.23 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -2.21 Total: -76.20 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -55.33 2.55 -52.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381564548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.955 kcal (2) G-P(sol) polarization free energy of solvation -55.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds