Wall clock time and date at job start Mon Mar 30 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32281 * 119.90324 * 2 1 4 4 C 1.31925 * 120.08635 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.05311 * 179.97438 * 4 3 2 6 6 C 1.39337 * 119.89105 * 359.97438 * 4 3 2 7 7 N 1.38994 * 120.09503 * 179.97438 * 6 4 3 8 8 C 1.46909 * 110.99672 * 205.07315 * 7 6 4 9 9 C 1.46898 * 111.00267 * 81.11460 * 7 6 4 10 10 H 1.08995 * 109.47212 * 309.99999 * 9 7 6 11 11 C 1.53000 * 109.46807 * 70.00243 * 9 7 6 12 12 C 1.50702 * 109.47086 * 189.99683 * 9 7 6 13 13 H 1.08000 * 119.99811 * 0.02562 * 12 9 7 14 14 C 1.37871 * 119.99861 * 179.97438 * 12 9 7 15 15 N 1.31513 * 120.00162 * 180.02562 * 14 12 9 16 16 Si 1.86805 * 120.00029 * 0.02562 * 14 12 9 17 17 H 1.48504 * 109.47150 * 89.99870 * 16 14 12 18 18 H 1.48503 * 109.46818 * 209.99385 * 16 14 12 19 19 H 1.48497 * 109.47211 * 329.99455 * 16 14 12 20 20 N 1.32658 * 119.80565 * 359.97438 * 6 4 3 21 21 C 1.32245 * 119.91625 * 0.02562 * 20 6 4 22 22 C 1.50702 * 119.94530 * 180.02562 * 21 20 6 23 23 H 1.09002 * 109.47219 * 90.00143 * 1 2 3 24 24 H 1.09005 * 109.47182 * 210.00194 * 1 2 3 25 25 H 1.09003 * 109.47277 * 329.99990 * 1 2 3 26 26 H 1.08992 * 109.47291 * 96.02028 * 5 4 3 27 27 H 1.09004 * 109.46623 * 216.01956 * 5 4 3 28 28 H 1.09006 * 109.46964 * 336.02002 * 5 4 3 29 29 H 1.08994 * 109.47646 * 66.67422 * 8 7 6 30 30 H 1.09002 * 109.46769 * 186.67145 * 8 7 6 31 31 H 1.08999 * 109.47031 * 306.66510 * 8 7 6 32 32 H 1.08998 * 109.47057 * 299.99737 * 11 9 7 33 33 H 1.08995 * 109.47433 * 59.99892 * 11 9 7 34 34 H 1.09000 * 109.47057 * 180.02562 * 11 9 7 35 35 H 0.96998 * 120.00331 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.47065 * 269.97714 * 22 21 20 37 37 H 1.09001 * 109.46886 * 29.98160 * 22 21 20 38 38 H 1.09007 * 109.46687 * 149.97874 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1664 1.1467 0.0000 4 6 3.4857 1.1509 -0.0005 5 6 4.2362 2.4577 -0.0011 6 6 4.1839 -0.0549 -0.0005 7 7 5.5738 -0.0554 -0.0016 8 6 6.0993 -1.2981 -0.5827 9 6 6.1015 0.1569 1.3528 10 1 5.6157 1.0239 1.8003 11 6 5.8239 -1.0811 2.2080 12 6 7.5878 0.3949 1.2813 13 1 8.0902 0.3896 0.3253 14 6 8.3062 0.6207 2.4363 15 7 9.6032 0.8289 2.3739 16 14 7.4371 0.6306 4.0898 17 1 7.4338 -0.7424 4.6556 18 1 8.1486 1.5465 5.0174 19 1 6.0382 1.0957 3.9110 20 7 3.5182 -1.2023 0.0005 21 6 2.1958 -1.1976 0.0010 22 6 1.4389 -2.5008 0.0028 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 4.5110 2.7193 1.0206 27 1 5.1377 2.3586 -0.6058 28 1 3.6027 3.2404 -0.4187 29 1 5.8489 -1.3380 -1.6427 30 1 7.1826 -1.3250 -0.4641 31 1 5.6567 -2.1535 -0.0722 32 1 4.7489 -1.2534 2.2597 33 1 6.3097 -1.9482 1.7606 34 1 6.2150 -0.9235 3.2131 35 1 10.1086 0.9874 3.1865 36 1 1.2556 -2.8159 -1.0245 37 1 2.0263 -3.2614 0.5170 38 1 0.4871 -2.3674 0.5172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396836173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:29 Heat of formation + Delta-G solvation = 60.140751 kcal Electronic energy + Delta-G solvation = -18999.863027 eV Core-core repulsion = 16264.053668 eV Total energy + Delta-G solvation = -2735.809359 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09297 -37.68769 -34.62082 -33.69977 -32.26192 -30.10633 -29.85100 -28.14383 -26.03242 -25.33884 -24.30986 -22.48754 -21.41913 -19.68361 -17.76245 -16.81938 -15.83232 -15.57592 -14.91997 -14.72186 -13.83908 -13.56143 -13.39453 -13.27214 -13.04940 -12.82382 -12.45616 -12.28233 -12.19964 -12.02395 -11.88149 -11.70852 -11.56461 -11.36399 -11.14057 -10.90808 -10.60044 -10.36308 -10.14329 -9.66598 -9.31654 -8.80917 -8.69339 -8.58918 -7.53200 -6.16738 -4.16661 1.12806 1.49449 3.19371 3.30027 3.31888 3.86296 4.13614 4.30375 4.36138 4.57485 4.82652 5.02614 5.14524 5.31225 5.39493 5.49251 5.56690 5.63658 5.81093 5.82732 5.90285 6.05921 6.06930 6.18575 6.23304 6.23541 6.29260 6.44129 6.46683 6.59049 6.74101 6.83364 7.04656 7.41730 7.49656 7.77564 7.90154 8.24190 8.49502 8.89365 9.43410 10.95652 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029261 B = 0.007061 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.666016 B = 3964.585076 C = 4066.598504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.039 3.961 3 N -0.431 5.431 4 C 0.085 3.915 5 C -0.091 4.091 6 C 0.275 3.725 7 N -0.460 5.460 8 C 0.034 3.966 9 C 0.190 3.810 10 H 0.043 0.957 11 C -0.180 4.180 12 C -0.507 4.507 13 H 0.087 0.913 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.881 3.119 17 H -0.279 1.279 18 H -0.293 1.293 19 H -0.270 1.270 20 N -0.472 5.472 21 C 0.085 3.915 22 C -0.099 4.099 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.633 -3.343 -3.846 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 N -0.147 5.147 4 C -0.061 4.061 5 C -0.149 4.149 6 C 0.041 3.959 7 N -0.179 5.179 8 C -0.114 4.114 9 C 0.085 3.915 10 H 0.061 0.939 11 C -0.239 4.239 12 C -0.545 4.545 13 H 0.105 0.895 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.711 3.289 17 H -0.206 1.206 18 H -0.221 1.221 19 H -0.195 1.195 20 N -0.191 5.191 21 C -0.057 4.057 22 C -0.157 4.157 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.240 -2.915 -4.027 16.030 hybrid contribution -0.519 -0.722 1.448 1.700 sum -15.759 -3.637 -2.578 16.377 Atomic orbital electron populations 1.20622 0.88534 1.03230 1.02723 1.21764 0.97765 0.89087 1.01494 1.68030 1.08073 1.28985 1.09592 1.21938 0.89381 0.96430 0.98313 1.20615 0.99593 0.90963 1.03680 1.21067 0.92522 0.88924 0.93431 1.59906 0.98964 1.35645 1.23359 1.22255 1.01751 0.89823 0.97556 1.19898 0.97250 0.93358 0.81003 0.93887 1.22781 0.98509 1.01792 1.00770 1.20804 0.88820 1.49166 0.95712 0.89504 1.24834 0.94664 0.94570 0.98553 1.69852 1.06145 1.48303 1.28719 0.86966 0.79832 0.77462 0.84597 1.20580 1.22061 1.19483 1.68414 1.08112 1.30097 1.12522 1.21826 0.90242 0.96240 0.97369 1.20710 0.99087 0.92980 1.02924 0.90755 0.90566 0.90791 0.90378 0.88756 0.91385 0.93318 0.89406 0.93691 0.95295 0.91944 0.93454 0.92390 0.90458 0.90615 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.78 36.00 0.35 -0.62 16 2 C 0.04 0.59 6.78 -82.43 -0.56 0.03 16 3 N -0.43 -7.58 10.34 -5.40 -0.06 -7.63 16 4 C 0.08 1.59 6.68 -82.14 -0.55 1.04 16 5 C -0.09 -1.54 9.15 36.01 0.33 -1.21 16 6 C 0.28 5.47 5.01 -154.73 -0.78 4.70 16 7 N -0.46 -9.75 3.85 -174.62 -0.67 -10.43 16 8 C 0.03 0.67 8.15 60.07 0.49 1.16 16 9 C 0.19 4.45 1.67 -68.86 -0.11 4.34 16 10 H 0.04 1.05 5.77 -51.93 -0.30 0.75 16 11 C -0.18 -4.06 7.94 37.16 0.30 -3.76 16 12 C -0.51 -13.60 8.39 -34.44 -0.29 -13.89 16 13 H 0.09 2.52 7.43 -52.49 -0.39 2.13 16 14 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 15 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 16 Si 0.88 21.52 24.37 -169.99 -4.14 17.38 16 17 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 19 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 20 N -0.47 -8.80 8.31 -8.48 -0.07 -8.87 16 21 C 0.08 1.32 6.78 -82.44 -0.56 0.76 16 22 C -0.10 -1.09 9.78 36.01 0.35 -0.74 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.35 7.49 -51.93 -0.39 0.96 16 27 H 0.09 1.66 7.67 -51.93 -0.40 1.26 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.83 6.64 -51.93 -0.34 1.49 16 31 H 0.04 0.88 6.07 -51.93 -0.32 0.56 16 32 H 0.03 0.62 7.11 -51.93 -0.37 0.25 16 33 H 0.06 1.37 6.57 -51.93 -0.34 1.03 16 34 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 LS Contribution 293.94 15.07 4.43 4.43 Total: -1.00 -30.25 293.94 -6.21 -36.46 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.35 Total: 0.35 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.12 Total: -6.16 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.03 Total: -52.46 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.14 Total: 17.38 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.25 -6.21 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396836173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.605 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds