Wall clock time and date at job start Mon Mar 30 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32281 * 119.90324 * 2 1 4 4 C 1.31925 * 120.08635 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.05311 * 179.97438 * 4 3 2 6 6 C 1.39337 * 119.89105 * 359.97438 * 4 3 2 7 7 N 1.38994 * 120.09503 * 179.97438 * 6 4 3 8 8 C 1.46909 * 110.99672 * 205.07315 * 7 6 4 9 9 C 1.46898 * 111.00267 * 81.11460 * 7 6 4 10 10 H 1.08995 * 109.47212 * 309.99999 * 9 7 6 11 11 C 1.53000 * 109.46807 * 70.00243 * 9 7 6 12 12 C 1.50702 * 109.47086 * 189.99683 * 9 7 6 13 13 H 1.08000 * 119.99811 * 0.02562 * 12 9 7 14 14 C 1.37871 * 119.99861 * 179.97438 * 12 9 7 15 15 N 1.31513 * 120.00162 * 180.02562 * 14 12 9 16 16 Si 1.86805 * 120.00029 * 0.02562 * 14 12 9 17 17 H 1.48504 * 109.47150 * 89.99870 * 16 14 12 18 18 H 1.48503 * 109.46818 * 209.99385 * 16 14 12 19 19 H 1.48497 * 109.47211 * 329.99455 * 16 14 12 20 20 N 1.32658 * 119.80565 * 359.97438 * 6 4 3 21 21 C 1.32245 * 119.91625 * 0.02562 * 20 6 4 22 22 C 1.50702 * 119.94530 * 180.02562 * 21 20 6 23 23 H 1.09002 * 109.47219 * 90.00143 * 1 2 3 24 24 H 1.09005 * 109.47182 * 210.00194 * 1 2 3 25 25 H 1.09003 * 109.47277 * 329.99990 * 1 2 3 26 26 H 1.08992 * 109.47291 * 96.02028 * 5 4 3 27 27 H 1.09004 * 109.46623 * 216.01956 * 5 4 3 28 28 H 1.09006 * 109.46964 * 336.02002 * 5 4 3 29 29 H 1.08994 * 109.47646 * 66.67422 * 8 7 6 30 30 H 1.09002 * 109.46769 * 186.67145 * 8 7 6 31 31 H 1.08999 * 109.47031 * 306.66510 * 8 7 6 32 32 H 1.08998 * 109.47057 * 299.99737 * 11 9 7 33 33 H 1.08995 * 109.47433 * 59.99892 * 11 9 7 34 34 H 1.09000 * 109.47057 * 180.02562 * 11 9 7 35 35 H 0.96998 * 120.00331 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.47065 * 269.97714 * 22 21 20 37 37 H 1.09001 * 109.46886 * 29.98160 * 22 21 20 38 38 H 1.09007 * 109.46687 * 149.97874 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1664 1.1467 0.0000 4 6 3.4857 1.1509 -0.0005 5 6 4.2362 2.4577 -0.0011 6 6 4.1839 -0.0549 -0.0005 7 7 5.5738 -0.0554 -0.0016 8 6 6.0993 -1.2981 -0.5827 9 6 6.1015 0.1569 1.3528 10 1 5.6157 1.0239 1.8003 11 6 5.8239 -1.0811 2.2080 12 6 7.5878 0.3949 1.2813 13 1 8.0902 0.3896 0.3253 14 6 8.3062 0.6207 2.4363 15 7 9.6032 0.8289 2.3739 16 14 7.4371 0.6306 4.0898 17 1 7.4338 -0.7424 4.6556 18 1 8.1486 1.5465 5.0174 19 1 6.0382 1.0957 3.9110 20 7 3.5182 -1.2023 0.0005 21 6 2.1958 -1.1976 0.0010 22 6 1.4389 -2.5008 0.0028 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 4.5110 2.7193 1.0206 27 1 5.1377 2.3586 -0.6058 28 1 3.6027 3.2404 -0.4187 29 1 5.8489 -1.3380 -1.6427 30 1 7.1826 -1.3250 -0.4641 31 1 5.6567 -2.1535 -0.0722 32 1 4.7489 -1.2534 2.2597 33 1 6.3097 -1.9482 1.7606 34 1 6.2150 -0.9235 3.2131 35 1 10.1086 0.9874 3.1865 36 1 1.2556 -2.8159 -1.0245 37 1 2.0263 -3.2614 0.5170 38 1 0.4871 -2.3674 0.5172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396836173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:28 Heat of formation + Delta-G solvation = 39.641991 kcal Electronic energy + Delta-G solvation = -19000.751920 eV Core-core repulsion = 16264.053668 eV Total energy + Delta-G solvation = -2736.698252 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42810 -39.26935 -35.88287 -35.32920 -33.99815 -31.70356 -31.20324 -29.24148 -27.48522 -27.30898 -25.67237 -23.86243 -22.84809 -21.31795 -19.09836 -18.78179 -17.54869 -17.18022 -16.32795 -16.03189 -15.44259 -15.32837 -14.59463 -14.47895 -14.26462 -14.16418 -13.92184 -13.75894 -13.55554 -13.46672 -13.40012 -13.06394 -12.86728 -12.84984 -12.56595 -12.37872 -12.31668 -12.03654 -11.68784 -11.58113 -11.28580 -10.82281 -10.25010 -9.94864 -9.01609 -8.32383 -6.35796 -0.17332 0.16338 1.24607 1.30638 1.39032 2.25720 2.52077 2.76927 3.01350 3.16969 3.32025 3.57711 3.95954 4.08534 4.25496 4.29070 4.38223 4.45286 4.55389 4.59009 4.70209 4.71485 4.76116 4.78997 4.82341 4.86612 4.95006 5.06284 5.07869 5.11837 5.21272 5.29797 5.48317 5.54333 5.81029 6.13756 6.36982 6.59190 6.69216 6.91030 7.27516 8.83575 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029261 B = 0.007061 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.666016 B = 3964.585076 C = 4066.598504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.046 3.954 3 N -0.443 5.443 4 C 0.065 3.935 5 C -0.085 4.085 6 C 0.245 3.755 7 N -0.470 5.470 8 C 0.044 3.956 9 C 0.198 3.802 10 H 0.035 0.965 11 C -0.170 4.170 12 C -0.502 4.502 13 H 0.052 0.948 14 C 0.027 3.973 15 N -0.937 5.937 16 Si 0.936 3.064 17 H -0.269 1.269 18 H -0.291 1.291 19 H -0.259 1.259 20 N -0.487 5.487 21 C 0.078 3.922 22 C -0.096 4.096 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.268 0.732 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.239 -4.331 -3.432 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 N -0.159 5.159 4 C -0.077 4.077 5 C -0.143 4.143 6 C 0.012 3.988 7 N -0.189 5.189 8 C -0.103 4.103 9 C 0.092 3.908 10 H 0.053 0.947 11 C -0.229 4.229 12 C -0.540 4.540 13 H 0.070 0.930 14 C -0.172 4.172 15 N -0.577 5.577 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.218 1.218 19 H -0.184 1.184 20 N -0.206 5.206 21 C -0.064 4.064 22 C -0.153 4.153 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.842 -3.892 -3.629 19.579 hybrid contribution 0.430 -0.471 1.193 1.353 sum -18.412 -4.363 -2.436 19.078 Atomic orbital electron populations 1.20820 0.84691 1.04882 1.04507 1.22667 1.00157 0.88295 0.98437 1.68122 1.07374 1.30285 1.10160 1.22049 0.90157 0.96421 0.99113 1.20535 0.99365 0.91360 1.02992 1.20942 0.91668 0.89920 0.96258 1.59755 1.00584 1.36429 1.22140 1.22128 1.00267 0.89597 0.98345 1.19606 0.94781 0.93498 0.82892 0.94673 1.22633 0.99075 1.01163 0.99994 1.20937 0.90776 1.48084 0.94247 0.93024 1.25539 0.95139 0.94446 1.02066 1.69979 1.07754 1.50166 1.29787 0.86049 0.79188 0.77929 0.80413 1.19519 1.21823 1.18368 1.68375 1.09838 1.29687 1.12703 1.22667 0.89412 0.98565 0.95792 1.20878 0.99675 0.90193 1.04574 0.88666 0.87527 0.90558 0.91206 0.90181 0.89393 0.91977 0.91502 0.93488 0.94241 0.91971 0.94044 0.92243 0.88491 0.91084 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.78 71.23 0.70 -0.77 16 2 C 0.05 1.25 6.78 42.47 0.29 1.53 16 3 N -0.44 -14.72 10.34 -170.99 -1.77 -16.48 16 4 C 0.07 2.42 6.68 42.81 0.29 2.71 16 5 C -0.08 -2.90 9.15 71.24 0.65 -2.25 16 6 C 0.24 9.62 5.01 133.04 0.67 10.28 16 7 N -0.47 -20.25 3.85 -706.39 -2.72 -22.97 16 8 C 0.04 1.78 8.15 127.69 1.04 2.82 16 9 C 0.20 9.40 1.67 44.17 0.07 9.47 16 10 H 0.04 1.73 5.77 -2.39 -0.01 1.72 16 11 C -0.17 -7.56 7.94 71.98 0.57 -6.98 16 12 C -0.50 -27.85 8.39 25.60 0.21 -27.64 16 13 H 0.05 3.17 7.43 -2.91 -0.02 3.15 16 14 C 0.03 1.52 5.45 84.65 0.46 1.98 16 15 N -0.94 -56.87 13.96 21.44 0.30 -56.57 16 16 Si 0.94 44.45 24.37 68.60 1.67 46.13 16 17 H -0.27 -12.28 6.87 99.48 0.68 -11.59 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 19 H -0.26 -11.76 6.53 99.48 0.65 -11.11 16 20 N -0.49 -17.35 8.31 -180.75 -1.50 -18.85 16 21 C 0.08 2.20 6.78 42.48 0.29 2.49 16 22 C -0.10 -1.67 9.78 71.24 0.70 -0.97 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.11 1.08 5.93 -2.38 -0.01 1.06 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 2.46 7.49 -2.39 -0.02 2.44 16 27 H 0.08 2.92 7.67 -2.38 -0.02 2.90 16 28 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.92 6.64 -2.39 -0.02 2.90 16 31 H 0.05 1.83 6.07 -2.39 -0.01 1.82 16 32 H 0.04 1.64 7.11 -2.39 -0.02 1.62 16 33 H 0.06 2.72 6.57 -2.39 -0.02 2.70 16 34 H 0.04 1.87 3.27 -2.39 -0.01 1.86 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 1.20 5.93 -2.38 -0.01 1.19 16 Total: -1.00 -66.82 293.94 2.90 -63.92 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.98 Total: 12.15 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.94 Total: -7.33 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -5.69 Total: -114.87 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.67 Total: 46.13 kcal Total: -66.82 2.90 -63.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396836173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.566 kcal (2) G-P(sol) polarization free energy of solvation -66.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds