Wall clock time and date at job start Mon Mar 30 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99559 * 2 1 4 4 H 1.48505 * 109.47088 * 270.00427 * 3 2 1 5 5 H 1.48500 * 109.47216 * 30.00600 * 3 2 1 6 6 H 1.48492 * 109.46743 * 150.00539 * 3 2 1 7 7 C 1.37871 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99721 * 173.58954 * 7 2 1 9 9 C 1.50694 * 120.00290 * 353.58956 * 7 2 1 10 10 C 1.52998 * 115.55186 * 85.44643 * 9 7 2 11 11 N 1.46902 * 109.47355 * 65.04990 * 10 9 7 12 12 C 1.46893 * 111.00343 * 185.35186 * 11 10 9 13 13 C 1.53002 * 109.47450 * 179.97438 * 12 11 10 14 14 C 1.53947 * 113.58283 * 185.00056 * 13 12 11 15 15 C 1.52915 * 86.78155 * 220.58463 * 14 13 12 16 16 C 1.52905 * 121.13421 * 150.61837 * 15 14 13 17 17 C 1.53944 * 86.78383 * 100.81995 * 16 15 14 18 18 C 1.53073 * 121.06813 * 259.15683 * 15 14 13 19 19 C 1.52906 * 88.04098 * 24.89919 * 15 14 13 20 20 C 1.53000 * 117.50313 * 231.11869 * 9 7 2 21 21 C 1.53000 * 117.50118 * 299.77905 * 9 7 2 22 22 H 0.96994 * 120.00641 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47218 * 305.05516 * 10 9 7 24 24 H 1.08997 * 109.47625 * 185.04926 * 10 9 7 25 25 H 1.00901 * 110.99823 * 61.39409 * 11 10 9 26 26 H 1.09000 * 109.47361 * 60.00284 * 12 11 10 27 27 H 1.09000 * 109.47568 * 300.00160 * 12 11 10 28 28 H 1.09001 * 112.82247 * 316.09199 * 13 12 11 29 29 H 1.09000 * 113.66268 * 106.11660 * 14 13 12 30 30 H 1.08995 * 113.74484 * 335.07083 * 14 13 12 31 31 H 1.09004 * 113.66661 * 346.34747 * 16 15 14 32 32 H 1.09003 * 113.66298 * 215.29397 * 16 15 14 33 33 H 1.09001 * 113.58400 * 139.33646 * 17 16 15 34 34 H 1.09004 * 113.57900 * 270.05028 * 17 16 15 35 35 H 1.09000 * 113.65849 * 144.67809 * 18 15 14 36 36 H 1.09004 * 113.70899 * 13.58355 * 18 15 14 37 37 H 1.09002 * 113.66179 * 89.57207 * 19 15 14 38 38 H 1.09005 * 113.66204 * 220.62652 * 19 15 14 39 39 H 1.09004 * 117.50087 * 215.00577 * 20 9 7 40 40 H 1.09001 * 117.49288 * 0.02562 * 20 9 7 41 41 H 1.09002 * 117.49532 * 359.97137 * 21 9 7 42 42 H 1.08993 * 117.50170 * 144.97177 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0795 -1.1968 -0.1050 9 6 1.2582 -2.4951 0.1446 10 6 0.7037 -3.0861 -1.1531 11 7 1.8168 -3.4573 -2.0370 12 6 1.3226 -3.9110 -3.3438 13 6 2.5081 -4.2874 -4.2348 14 6 2.1038 -4.6616 -5.6723 15 6 3.1440 -5.7788 -5.5822 16 6 2.9775 -7.0795 -6.3686 17 6 3.9864 -6.4982 -7.3756 18 6 4.5243 -5.6268 -6.2262 19 6 2.9712 -5.7455 -4.0633 20 6 1.7459 -3.4738 1.2147 21 6 0.4403 -2.7018 1.4210 22 1 -0.4851 0.8399 0.0004 23 1 0.0762 -2.3463 -1.6503 24 1 0.1104 -3.9714 -0.9248 25 1 2.4009 -4.1592 -1.6077 26 1 0.7542 -3.1095 -3.8156 27 1 0.6798 -4.7806 -3.2073 28 1 3.3211 -3.5630 -4.1851 29 1 2.3472 -3.8957 -6.4087 30 1 1.0795 -5.0236 -5.7600 31 1 1.9777 -7.2167 -6.7807 32 1 3.3440 -7.9599 -5.8407 33 1 4.7069 -7.2293 -7.7425 34 1 3.5211 -5.9243 -8.1771 35 1 5.3263 -6.0981 -5.6582 36 1 4.7586 -4.6049 -6.5246 37 1 2.1905 -6.4122 -3.6971 38 1 3.9076 -5.8455 -3.5141 39 1 1.6718 -4.5387 0.9942 40 1 2.6064 -3.1763 1.8141 41 1 0.4424 -1.8969 2.1560 42 1 -0.4929 -3.2585 1.3361 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691881770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:11 Heat of formation + Delta-G solvation = 55.268178 kcal Electronic energy + Delta-G solvation = -18212.694576 eV Core-core repulsion = 15580.214270 eV Total energy + Delta-G solvation = -2632.480307 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42275 -37.03962 -35.61956 -33.16967 -31.75765 -27.31395 -25.85386 -25.78066 -25.32398 -23.59834 -22.25338 -20.96400 -19.90569 -18.83401 -17.93511 -16.19428 -15.50713 -15.41757 -15.15514 -14.48498 -14.12556 -13.78414 -13.63886 -13.03363 -12.83270 -12.76594 -12.10199 -11.97841 -11.83085 -11.62008 -11.29609 -11.12334 -10.87107 -10.76489 -10.61855 -10.53701 -10.37099 -10.12496 -10.09828 -9.97988 -9.65137 -9.29384 -8.72273 -8.30317 -7.99106 -7.43317 -5.89514 -3.90526 3.38569 3.44653 3.48671 4.37585 4.39642 4.52891 4.59115 4.71014 4.80467 4.88170 5.14398 5.36838 5.40729 5.49866 5.55573 5.61238 5.62789 5.74242 5.78258 5.83230 5.86913 5.90746 5.95767 6.04452 6.16149 6.21006 6.27843 6.37399 6.41943 6.54381 6.57406 6.69313 6.73802 6.79942 6.98160 7.17954 7.53464 7.66512 8.03374 8.06916 8.28301 8.63434 9.08350 9.72181 11.20540 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028263 B = 0.004513 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.448275 B = 6202.397742 C = 6709.458005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.468 4.468 8 H 0.059 0.941 9 C 0.053 3.947 10 C 0.107 3.893 11 N -0.668 5.668 12 C 0.071 3.929 13 C -0.100 4.100 14 C -0.110 4.110 15 C -0.104 4.104 16 C -0.130 4.130 17 C -0.140 4.140 18 C -0.117 4.117 19 C -0.126 4.126 20 C -0.216 4.216 21 C -0.159 4.159 22 H 0.256 0.744 23 H 0.075 0.925 24 H -0.008 1.008 25 H 0.328 0.672 26 H 0.067 0.933 27 H 0.015 0.985 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 -12.159 -11.356 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.506 4.506 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.021 4.021 11 N -0.297 5.297 12 C -0.059 4.059 13 C -0.119 4.119 14 C -0.148 4.148 15 C -0.104 4.104 16 C -0.167 4.167 17 C -0.177 4.177 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.253 4.253 21 C -0.198 4.198 22 H 0.066 0.934 23 H 0.093 0.907 24 H 0.010 0.990 25 H 0.145 0.855 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.525 -11.371 -11.568 16.840 hybrid contribution -0.063 0.034 0.281 0.290 sum 4.461 -11.337 -11.286 16.608 Atomic orbital electron populations 1.70011 1.05802 1.26066 1.50614 1.24935 0.94747 0.98691 0.95122 0.86670 0.79908 0.83826 0.77993 1.20805 1.21506 1.20019 1.20303 0.92819 0.88413 1.49026 0.92303 1.18824 0.97015 0.93676 0.85233 1.21536 0.90733 0.95700 0.94180 1.60260 1.21814 1.44713 1.02957 1.21890 0.94999 0.97640 0.91369 1.22530 0.98956 0.96254 0.94112 1.22689 0.97961 0.96765 0.97381 1.22430 0.96465 0.95953 0.95574 1.22752 0.99375 0.97027 0.97541 1.22808 0.98857 0.99309 0.96752 1.22662 0.95607 1.00286 0.96851 1.22884 1.01305 0.97225 0.94873 1.22985 0.98493 0.95407 1.08448 1.22514 0.91926 1.01172 1.04145 0.93392 0.90687 0.99024 0.85493 0.91484 0.96670 0.88386 0.91546 0.90112 0.91695 0.90289 0.91864 0.90421 0.90037 0.91346 0.90452 0.91543 0.92274 0.90565 0.90101 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 12.92 55.43 0.72 -24.86 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.47 -12.96 8.74 -34.45 -0.30 -13.26 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.33 1.55 -155.66 -0.24 1.08 16 10 C 0.11 2.45 5.51 -3.82 -0.02 2.43 16 11 N -0.67 -13.32 6.38 -113.78 -0.73 -14.05 16 12 C 0.07 1.17 5.51 -3.83 -0.02 1.15 16 13 C -0.10 -1.38 3.90 -89.64 -0.35 -1.73 16 14 C -0.11 -1.29 7.40 -26.28 -0.19 -1.49 16 15 C -0.10 -1.12 1.11 -154.63 -0.17 -1.29 16 16 C -0.13 -1.22 7.84 -26.29 -0.21 -1.43 16 17 C -0.14 -1.23 8.08 -25.75 -0.21 -1.44 16 18 C -0.12 -1.15 7.86 -26.20 -0.21 -1.36 16 19 C -0.13 -1.52 7.40 -26.28 -0.19 -1.71 16 20 C -0.22 -4.79 9.96 -26.69 -0.27 -5.05 16 21 C -0.16 -3.83 9.41 -26.69 -0.25 -4.08 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.07 1.92 8.13 -51.93 -0.42 1.50 16 24 H -0.01 -0.18 8.09 -51.93 -0.42 -0.60 16 25 H 0.33 6.17 8.79 -39.29 -0.35 5.83 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.02 0.24 7.85 -51.93 -0.41 -0.17 16 28 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -28.23 338.79 -10.54 -38.77 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.89 Total: 4.75 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -2.73 Total: -26.41 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.01 Total: -38.91 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.23 -10.54 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691881770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.043 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds