Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99559 * 2 1 4 4 H 1.48505 * 109.47088 * 270.00427 * 3 2 1 5 5 H 1.48500 * 109.47216 * 30.00600 * 3 2 1 6 6 H 1.48492 * 109.46743 * 150.00539 * 3 2 1 7 7 C 1.37871 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99721 * 173.58954 * 7 2 1 9 9 C 1.50694 * 120.00290 * 353.58956 * 7 2 1 10 10 C 1.52998 * 115.55186 * 85.44643 * 9 7 2 11 11 N 1.46902 * 109.47355 * 65.04990 * 10 9 7 12 12 C 1.46893 * 111.00343 * 185.35186 * 11 10 9 13 13 C 1.53002 * 109.47450 * 179.97438 * 12 11 10 14 14 C 1.53947 * 113.58283 * 185.00056 * 13 12 11 15 15 C 1.52915 * 86.78155 * 220.58463 * 14 13 12 16 16 C 1.52905 * 121.13421 * 150.61837 * 15 14 13 17 17 C 1.53944 * 86.78383 * 100.81995 * 16 15 14 18 18 C 1.53073 * 121.06813 * 259.15683 * 15 14 13 19 19 C 1.52906 * 88.04098 * 24.89919 * 15 14 13 20 20 C 1.53000 * 117.50313 * 231.11869 * 9 7 2 21 21 C 1.53000 * 117.50118 * 299.77905 * 9 7 2 22 22 H 0.96994 * 120.00641 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47218 * 305.05516 * 10 9 7 24 24 H 1.08997 * 109.47625 * 185.04926 * 10 9 7 25 25 H 1.00901 * 110.99823 * 61.39409 * 11 10 9 26 26 H 1.09000 * 109.47361 * 60.00284 * 12 11 10 27 27 H 1.09000 * 109.47568 * 300.00160 * 12 11 10 28 28 H 1.09001 * 112.82247 * 316.09199 * 13 12 11 29 29 H 1.09000 * 113.66268 * 106.11660 * 14 13 12 30 30 H 1.08995 * 113.74484 * 335.07083 * 14 13 12 31 31 H 1.09004 * 113.66661 * 346.34747 * 16 15 14 32 32 H 1.09003 * 113.66298 * 215.29397 * 16 15 14 33 33 H 1.09001 * 113.58400 * 139.33646 * 17 16 15 34 34 H 1.09004 * 113.57900 * 270.05028 * 17 16 15 35 35 H 1.09000 * 113.65849 * 144.67809 * 18 15 14 36 36 H 1.09004 * 113.70899 * 13.58355 * 18 15 14 37 37 H 1.09002 * 113.66179 * 89.57207 * 19 15 14 38 38 H 1.09005 * 113.66204 * 220.62652 * 19 15 14 39 39 H 1.09004 * 117.50087 * 215.00577 * 20 9 7 40 40 H 1.09001 * 117.49288 * 0.02562 * 20 9 7 41 41 H 1.09002 * 117.49532 * 359.97137 * 21 9 7 42 42 H 1.08993 * 117.50170 * 144.97177 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0795 -1.1968 -0.1050 9 6 1.2582 -2.4951 0.1446 10 6 0.7037 -3.0861 -1.1531 11 7 1.8168 -3.4573 -2.0370 12 6 1.3226 -3.9110 -3.3438 13 6 2.5081 -4.2874 -4.2348 14 6 2.1038 -4.6616 -5.6723 15 6 3.1440 -5.7788 -5.5822 16 6 2.9775 -7.0795 -6.3686 17 6 3.9864 -6.4982 -7.3756 18 6 4.5243 -5.6268 -6.2262 19 6 2.9712 -5.7455 -4.0633 20 6 1.7459 -3.4738 1.2147 21 6 0.4403 -2.7018 1.4210 22 1 -0.4851 0.8399 0.0004 23 1 0.0762 -2.3463 -1.6503 24 1 0.1104 -3.9714 -0.9248 25 1 2.4009 -4.1592 -1.6077 26 1 0.7542 -3.1095 -3.8156 27 1 0.6798 -4.7806 -3.2073 28 1 3.3211 -3.5630 -4.1851 29 1 2.3472 -3.8957 -6.4087 30 1 1.0795 -5.0236 -5.7600 31 1 1.9777 -7.2167 -6.7807 32 1 3.3440 -7.9599 -5.8407 33 1 4.7069 -7.2293 -7.7425 34 1 3.5211 -5.9243 -8.1771 35 1 5.3263 -6.0981 -5.6582 36 1 4.7586 -4.6049 -6.5246 37 1 2.1905 -6.4122 -3.6971 38 1 3.9076 -5.8455 -3.5141 39 1 1.6718 -4.5387 0.9942 40 1 2.6064 -3.1763 1.8141 41 1 0.4424 -1.8969 2.1560 42 1 -0.4929 -3.2585 1.3361 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691881770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = 41.106038 kcal Electronic energy + Delta-G solvation = -18213.308693 eV Core-core repulsion = 15580.214270 eV Total energy + Delta-G solvation = -2633.094423 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32143 -38.81153 -36.83829 -34.56955 -33.85165 -28.77183 -27.41807 -26.71986 -26.58238 -25.02156 -23.41123 -22.78325 -21.16178 -20.62359 -18.78164 -18.06660 -16.94560 -16.45619 -16.33356 -16.12613 -15.60952 -15.29424 -15.09272 -14.70952 -14.20792 -13.60501 -13.59628 -13.27515 -12.93727 -12.85992 -12.84004 -12.70323 -12.53544 -12.46458 -12.25481 -12.00393 -11.72748 -11.49340 -11.29711 -10.96427 -10.90620 -10.72679 -10.52188 -10.32913 -9.89945 -9.03101 -8.02836 -6.09019 1.43044 1.44161 1.53618 2.48535 3.25509 3.27697 3.53774 3.57594 3.70109 3.78908 3.94276 3.98135 4.00992 4.36434 4.45619 4.51415 4.59907 4.63010 4.70520 4.77134 4.81911 4.86326 4.92143 4.92783 4.94474 4.95264 4.99439 5.06643 5.11100 5.15689 5.18309 5.25303 5.28769 5.53368 5.61021 5.64426 5.71856 5.76294 5.88895 6.39012 6.53655 6.79494 6.94479 7.56103 9.06385 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028263 B = 0.004513 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.448275 B = 6202.397742 C = 6709.458005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.945 3.055 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.480 4.480 8 H 0.047 0.953 9 C 0.025 3.975 10 C 0.122 3.878 11 N -0.679 5.679 12 C 0.075 3.925 13 C -0.102 4.102 14 C -0.105 4.105 15 C -0.103 4.103 16 C -0.126 4.126 17 C -0.134 4.134 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.187 4.187 21 C -0.167 4.167 22 H 0.256 0.744 23 H 0.039 0.961 24 H 0.004 0.996 25 H 0.337 0.663 26 H 0.049 0.951 27 H 0.026 0.974 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 -13.595 -12.174 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.518 4.518 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.007 4.007 11 N -0.309 5.309 12 C -0.054 4.054 13 C -0.121 4.121 14 C -0.143 4.143 15 C -0.103 4.103 16 C -0.164 4.164 17 C -0.171 4.171 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.224 4.224 21 C -0.205 4.205 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.022 0.978 25 H 0.155 0.845 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.458 -12.818 -12.388 18.643 hybrid contribution -0.341 0.468 0.544 0.795 sum 5.117 -12.350 -11.844 17.860 Atomic orbital electron populations 1.70114 1.06923 1.26592 1.51632 1.25592 0.95502 1.01625 0.95096 0.85764 0.78895 0.80287 0.77882 1.20693 1.21145 1.19477 1.20539 0.92495 0.90096 1.48674 0.93456 1.18936 0.98160 0.93984 0.86522 1.21186 0.91088 0.95036 0.93404 1.60158 1.21249 1.45794 1.03723 1.21905 0.96220 0.97278 0.90025 1.22452 0.97422 0.97084 0.95152 1.22665 0.98691 0.97257 0.95714 1.22416 0.96786 0.96525 0.94618 1.22762 0.99880 0.96377 0.97337 1.22790 0.98765 0.99191 0.96353 1.22721 0.95227 1.00423 0.97400 1.22853 1.01249 0.95577 0.96108 1.22968 0.97126 0.96407 1.05906 1.22436 0.93435 1.01326 1.03291 0.93545 0.94290 0.97773 0.84549 0.93253 0.95550 0.90042 0.91363 0.89598 0.91335 0.89573 0.90616 0.90157 0.89536 0.91844 0.90167 0.91544 0.89319 0.90565 0.92418 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.55 12.92 21.45 0.28 -53.28 16 2 C 0.02 1.16 5.39 84.65 0.46 1.61 16 3 Si 0.95 44.96 29.54 68.60 2.03 46.98 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.48 -26.81 8.74 25.60 0.22 -26.59 16 8 H 0.05 2.69 7.82 -2.91 -0.02 2.66 16 9 C 0.02 1.22 1.55 -52.93 -0.08 1.14 16 10 C 0.12 5.59 5.51 86.30 0.48 6.07 16 11 N -0.68 -26.86 6.38 -513.90 -3.28 -30.14 16 12 C 0.07 2.46 5.51 86.31 0.48 2.93 16 13 C -0.10 -2.75 3.90 -10.16 -0.04 -2.79 16 14 C -0.11 -2.33 7.40 30.89 0.23 -2.10 16 15 C -0.10 -2.02 1.11 -52.26 -0.06 -2.08 16 16 C -0.13 -2.05 7.84 30.88 0.24 -1.80 16 17 C -0.13 -2.00 8.08 31.23 0.25 -1.75 16 18 C -0.12 -2.14 7.86 30.94 0.24 -1.89 16 19 C -0.12 -2.71 7.40 30.88 0.23 -2.48 16 20 C -0.19 -7.98 9.96 30.62 0.30 -7.67 16 21 C -0.17 -7.96 9.41 30.62 0.29 -7.68 16 22 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 23 H 0.04 2.04 8.13 -2.39 -0.02 2.02 16 24 H 0.00 0.18 8.09 -2.39 -0.02 0.16 16 25 H 0.34 12.28 8.79 -89.69 -0.79 11.49 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 0.81 7.85 -2.39 -0.02 0.79 16 28 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.77 7.90 -2.39 -0.02 1.75 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -59.88 338.79 2.44 -57.44 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.17 Total: 24.07 kcal Atomic # 6 Polarization: -48.32 SS G_CDS: 3.24 Total: -45.08 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.00 Total: -83.42 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -59.88 2.44 -57.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691881770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.550 kcal (2) G-P(sol) polarization free energy of solvation -59.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds