Wall clock time and date at job start Mon Mar 30 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47230 * 2 1 4 4 C 1.46895 * 111.00043 * 198.87824 * 3 2 1 5 5 C 1.50698 * 109.47241 * 66.04823 * 4 3 2 6 6 H 1.07999 * 120.00105 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99870 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00336 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00103 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46834 * 59.99926 * 9 7 5 11 11 H 1.48497 * 109.47314 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46813 * 300.00231 * 9 7 5 13 13 C 1.38999 * 110.99794 * 74.92110 * 3 2 1 14 14 N 1.32686 * 120.09355 * 58.11501 * 13 3 2 15 15 C 1.32226 * 119.91256 * 179.74197 * 14 13 3 16 16 C 1.38197 * 120.10155 * 0.55545 * 15 14 13 17 17 N 1.32249 * 120.19236 * 359.69974 * 16 15 14 18 18 C 1.31944 * 120.08425 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.05070 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.46946 * 298.53733 * 19 18 17 21 21 C 1.52996 * 109.47218 * 58.53830 * 19 18 17 22 22 H 1.08996 * 109.46967 * 294.18568 * 1 2 3 23 23 H 1.08993 * 109.46812 * 54.18731 * 1 2 3 24 24 H 1.08997 * 109.46792 * 174.18647 * 1 2 3 25 25 H 1.09001 * 109.47169 * 120.00653 * 2 1 3 26 26 H 1.08999 * 109.46566 * 240.00078 * 2 1 3 27 27 H 1.09007 * 109.47267 * 186.04883 * 4 3 2 28 28 H 1.09002 * 109.47133 * 306.04762 * 4 3 2 29 29 H 0.97000 * 119.99610 * 179.97438 * 8 7 5 30 30 H 1.08000 * 119.94585 * 180.25499 * 15 14 13 31 31 H 1.08005 * 119.90686 * 179.71854 * 16 15 14 32 32 H 1.09003 * 109.47187 * 178.54374 * 19 18 17 33 33 H 1.09001 * 109.46988 * 65.02916 * 20 19 18 34 34 H 1.09002 * 109.46938 * 185.02550 * 20 19 18 35 35 H 1.08996 * 109.47014 * 305.02394 * 20 19 18 36 36 H 1.09002 * 109.47104 * 299.99981 * 21 19 18 37 37 H 1.09005 * 109.46847 * 60.00273 * 21 19 18 38 38 H 1.08997 * 109.47101 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4186 1.4487 -0.4437 5 6 3.5058 1.0377 -1.8909 6 1 2.6115 0.7567 -2.4273 7 6 4.7274 1.0193 -2.5299 8 7 5.8166 1.3609 -1.8766 9 14 4.8357 0.5091 -4.3237 10 1 4.0123 1.4279 -5.1502 11 1 6.2498 0.5737 -4.7722 12 1 4.3308 -0.8793 -4.4747 13 6 1.8675 1.9671 1.2530 14 7 2.4400 1.4170 2.3161 15 6 2.2971 1.9767 3.5056 16 6 1.5431 3.1265 3.6445 17 7 0.9665 3.6754 2.5884 18 6 1.1087 3.1263 1.3972 19 6 0.4508 3.7520 0.1944 20 6 -1.0669 3.7577 0.3885 21 6 0.9494 5.1891 0.0303 22 1 -0.3633 0.4210 0.9374 23 1 -0.3633 0.6013 -0.8333 24 1 -0.3633 -1.0224 -0.1041 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.7890 2.4679 -0.3325 28 1 4.0232 0.7742 0.1626 29 1 6.6760 1.3476 -2.3262 30 1 2.7662 1.5317 4.3706 31 1 1.4247 3.5784 4.6183 32 1 0.7009 3.1766 -0.6970 33 1 -1.3235 4.4055 1.2267 34 1 -1.5476 4.1277 -0.5172 35 1 -1.4106 2.7440 0.5941 36 1 0.6992 5.7645 0.9217 37 1 2.0306 5.1850 -0.1080 38 1 0.4739 5.6415 -0.8399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699522110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:33 Heat of formation + Delta-G solvation = 43.371561 kcal Electronic energy + Delta-G solvation = -18895.855475 eV Core-core repulsion = 16159.318949 eV Total energy + Delta-G solvation = -2736.536526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90942 -36.97673 -35.57295 -33.05166 -32.49214 -30.58115 -29.34920 -26.80963 -26.51464 -24.67089 -23.34705 -22.51814 -20.49074 -20.18361 -17.47729 -16.60235 -16.07958 -15.58692 -15.19328 -14.40207 -14.31677 -13.75290 -13.60143 -13.29471 -13.21746 -12.68734 -12.38279 -12.19905 -11.87968 -11.38962 -11.19865 -11.15796 -11.06399 -10.98664 -10.84620 -10.67074 -10.45679 -10.43640 -10.34501 -10.02513 -9.43497 -8.70060 -8.53256 -8.49449 -7.62331 -6.07713 -4.10527 1.18209 1.54184 3.31124 3.35517 3.37749 4.04371 4.21610 4.41757 4.54145 4.78427 4.94260 5.27629 5.30865 5.36153 5.46936 5.52951 5.70174 5.75940 5.89311 5.93924 6.00680 6.07096 6.15269 6.21221 6.28998 6.35340 6.53480 6.58313 6.62962 6.74159 6.87359 7.17504 7.31364 7.67508 7.74436 7.87888 8.04616 8.24212 8.44098 8.95418 9.53367 11.03039 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.007139 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.681094 B = 3921.208789 C = 4115.900933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 N -0.483 5.483 4 C 0.203 3.797 5 C -0.512 4.512 6 H 0.067 0.933 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.278 3.722 14 N -0.468 5.468 15 C 0.050 3.950 16 C 0.022 3.978 17 N -0.435 5.435 18 C 0.110 3.890 19 C -0.039 4.039 20 C -0.134 4.134 21 C -0.137 4.137 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.038 0.962 26 H 0.095 0.905 27 H 0.027 0.973 28 H 0.007 0.993 29 H 0.263 0.737 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.114 0.886 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.505 2.754 7.233 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 N -0.207 5.207 4 C 0.080 3.920 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.046 3.954 14 N -0.186 5.186 15 C -0.111 4.111 16 C -0.137 4.137 17 N -0.150 5.150 18 C -0.034 4.034 19 C -0.059 4.059 20 C -0.192 4.192 21 C -0.195 4.195 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.113 0.887 27 H 0.045 0.955 28 H 0.025 0.975 29 H 0.073 0.927 30 H 0.176 0.824 31 H 0.178 0.822 32 H 0.132 0.868 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.563 3.020 6.881 12.964 hybrid contribution 0.906 -0.738 -0.112 1.173 sum -9.658 2.283 6.769 12.013 Atomic orbital electron populations 1.21800 0.96428 1.00784 1.01135 1.22070 0.94117 0.88438 1.02414 1.60510 1.26071 1.18550 1.15613 1.19766 0.79119 0.97280 0.95825 1.21046 0.93459 1.45431 0.95139 0.91520 1.24981 0.95555 0.95384 0.98471 1.69963 0.98557 1.48038 1.36840 0.86523 0.76942 0.79144 0.84591 1.20057 1.21346 1.20177 1.21146 0.91343 0.92740 0.90156 1.68657 1.17791 1.32459 0.99681 1.23516 0.97300 0.94483 0.95779 1.23488 0.96698 0.95141 0.98347 1.68134 1.18194 1.30050 0.98625 1.22017 0.95233 0.92539 0.93604 1.20067 0.94247 0.96775 0.94834 1.21743 0.94467 1.01462 1.01533 1.21742 1.01311 0.95030 1.01374 0.94521 0.91795 0.92882 0.94354 0.88713 0.95512 0.97525 0.92741 0.82437 0.82163 0.86821 0.92553 0.92365 0.93199 0.92529 0.92738 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.94 37.16 0.37 -1.94 16 2 C 0.06 1.12 5.49 -3.82 -0.02 1.10 16 3 N -0.48 -10.44 3.11 -174.43 -0.54 -10.98 16 4 C 0.20 5.32 4.56 -4.98 -0.02 5.29 16 5 C -0.51 -13.97 8.24 -34.44 -0.28 -14.25 16 6 H 0.07 1.76 7.30 -52.49 -0.38 1.38 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 C 0.28 5.62 4.66 -154.72 -0.72 4.89 16 14 N -0.47 -9.22 9.61 -12.24 -0.12 -9.34 16 15 C 0.05 0.77 11.22 -17.40 -0.20 0.58 16 16 C 0.02 0.32 11.21 -17.39 -0.19 0.12 16 17 N -0.44 -7.22 10.06 -9.12 -0.09 -7.31 16 18 C 0.11 1.98 5.48 -82.15 -0.45 1.53 16 19 C -0.04 -0.64 3.13 -91.77 -0.29 -0.93 16 20 C -0.13 -1.82 9.10 37.16 0.34 -1.48 16 21 C -0.14 -2.06 9.09 37.16 0.34 -1.72 16 22 H 0.04 0.59 7.83 -51.93 -0.41 0.18 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.78 7.42 -51.93 -0.39 0.39 16 26 H 0.09 1.98 6.58 -51.93 -0.34 1.64 16 27 H 0.03 0.77 8.06 -51.92 -0.42 0.35 16 28 H 0.01 0.20 8.12 -51.93 -0.42 -0.23 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.11 2.06 6.91 -51.93 -0.36 1.70 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.81 8.02 -51.93 -0.42 0.40 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -30.34 316.14 -7.57 -37.91 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.07 Total: -0.28 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.23 Total: -5.28 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.02 Total: -53.32 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.34 -7.57 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699522110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.285 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds