Wall clock time and date at job start Mon Mar 30 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47230 * 2 1 4 4 C 1.46895 * 111.00043 * 198.87824 * 3 2 1 5 5 C 1.50698 * 109.47241 * 66.04823 * 4 3 2 6 6 H 1.07999 * 120.00105 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99870 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00336 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00103 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46834 * 59.99926 * 9 7 5 11 11 H 1.48497 * 109.47314 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46813 * 300.00231 * 9 7 5 13 13 C 1.38999 * 110.99794 * 74.92110 * 3 2 1 14 14 N 1.32686 * 120.09355 * 58.11501 * 13 3 2 15 15 C 1.32226 * 119.91256 * 179.74197 * 14 13 3 16 16 C 1.38197 * 120.10155 * 0.55545 * 15 14 13 17 17 N 1.32249 * 120.19236 * 359.69974 * 16 15 14 18 18 C 1.31944 * 120.08425 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.05070 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.46946 * 298.53733 * 19 18 17 21 21 C 1.52996 * 109.47218 * 58.53830 * 19 18 17 22 22 H 1.08996 * 109.46967 * 294.18568 * 1 2 3 23 23 H 1.08993 * 109.46812 * 54.18731 * 1 2 3 24 24 H 1.08997 * 109.46792 * 174.18647 * 1 2 3 25 25 H 1.09001 * 109.47169 * 120.00653 * 2 1 3 26 26 H 1.08999 * 109.46566 * 240.00078 * 2 1 3 27 27 H 1.09007 * 109.47267 * 186.04883 * 4 3 2 28 28 H 1.09002 * 109.47133 * 306.04762 * 4 3 2 29 29 H 0.97000 * 119.99610 * 179.97438 * 8 7 5 30 30 H 1.08000 * 119.94585 * 180.25499 * 15 14 13 31 31 H 1.08005 * 119.90686 * 179.71854 * 16 15 14 32 32 H 1.09003 * 109.47187 * 178.54374 * 19 18 17 33 33 H 1.09001 * 109.46988 * 65.02916 * 20 19 18 34 34 H 1.09002 * 109.46938 * 185.02550 * 20 19 18 35 35 H 1.08996 * 109.47014 * 305.02394 * 20 19 18 36 36 H 1.09002 * 109.47104 * 299.99981 * 21 19 18 37 37 H 1.09005 * 109.46847 * 60.00273 * 21 19 18 38 38 H 1.08997 * 109.47101 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4186 1.4487 -0.4437 5 6 3.5058 1.0377 -1.8909 6 1 2.6115 0.7567 -2.4273 7 6 4.7274 1.0193 -2.5299 8 7 5.8166 1.3609 -1.8766 9 14 4.8357 0.5091 -4.3237 10 1 4.0123 1.4279 -5.1502 11 1 6.2498 0.5737 -4.7722 12 1 4.3308 -0.8793 -4.4747 13 6 1.8675 1.9671 1.2530 14 7 2.4400 1.4170 2.3161 15 6 2.2971 1.9767 3.5056 16 6 1.5431 3.1265 3.6445 17 7 0.9665 3.6754 2.5884 18 6 1.1087 3.1263 1.3972 19 6 0.4508 3.7520 0.1944 20 6 -1.0669 3.7577 0.3885 21 6 0.9494 5.1891 0.0303 22 1 -0.3633 0.4210 0.9374 23 1 -0.3633 0.6013 -0.8333 24 1 -0.3633 -1.0224 -0.1041 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.7890 2.4679 -0.3325 28 1 4.0232 0.7742 0.1626 29 1 6.6760 1.3476 -2.3262 30 1 2.7662 1.5317 4.3706 31 1 1.4247 3.5784 4.6183 32 1 0.7009 3.1766 -0.6970 33 1 -1.3235 4.4055 1.2267 34 1 -1.5476 4.1277 -0.5172 35 1 -1.4106 2.7440 0.5941 36 1 0.6992 5.7645 0.9217 37 1 2.0306 5.1850 -0.1080 38 1 0.4739 5.6415 -0.8399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699522110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:32 Heat of formation + Delta-G solvation = 24.493857 kcal Electronic energy + Delta-G solvation = -18896.674074 eV Core-core repulsion = 16159.318949 eV Total energy + Delta-G solvation = -2737.355125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.27440 -38.58827 -36.83974 -34.94066 -34.06591 -32.01227 -30.96021 -28.36790 -27.95281 -26.01601 -24.84880 -24.34655 -22.06754 -21.46998 -18.99126 -18.41204 -17.65931 -17.02632 -16.85195 -16.13475 -15.62324 -15.16284 -14.97589 -14.83659 -14.55970 -14.27376 -13.97716 -13.86621 -12.98816 -12.93573 -12.80535 -12.75752 -12.53707 -12.44576 -12.31754 -12.20882 -12.07753 -11.91108 -11.76327 -11.68802 -11.45473 -10.65228 -10.13223 -9.86355 -9.33392 -8.23132 -6.34655 -0.13566 0.19640 1.42106 1.45869 1.53613 2.38168 2.72252 2.82876 3.10467 3.26093 3.43949 3.66994 4.01331 4.15696 4.24865 4.33479 4.36808 4.40817 4.53835 4.65946 4.84310 4.86317 4.87171 4.98046 5.00613 5.02009 5.08471 5.18005 5.19404 5.32782 5.34599 5.42180 5.58995 5.66778 5.97856 6.05476 6.35147 6.59925 6.79280 6.91159 7.34947 8.88574 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.007139 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.681094 B = 3921.208789 C = 4115.900933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.057 3.943 3 N -0.477 5.477 4 C 0.229 3.771 5 C -0.523 4.523 6 H 0.074 0.926 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.974 3.026 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.237 3.763 14 N -0.503 5.503 15 C 0.045 3.955 16 C 0.043 3.957 17 N -0.441 5.441 18 C 0.105 3.895 19 C -0.042 4.042 20 C -0.124 4.124 21 C -0.130 4.130 22 H 0.036 0.964 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.025 0.975 26 H 0.076 0.924 27 H -0.011 1.011 28 H -0.034 1.034 29 H 0.265 0.735 30 H 0.196 0.804 31 H 0.212 0.788 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.026 0.974 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 3.161 7.653 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.070 4.070 3 N -0.201 5.201 4 C 0.104 3.896 5 C -0.561 4.561 6 H 0.092 0.908 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.798 3.202 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.189 1.189 13 C 0.007 3.993 14 N -0.221 5.221 15 C -0.116 4.116 16 C -0.117 4.117 17 N -0.156 5.156 18 C -0.037 4.037 19 C -0.062 4.062 20 C -0.181 4.181 21 C -0.188 4.188 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.043 0.957 26 H 0.095 0.905 27 H 0.007 0.993 28 H -0.016 1.016 29 H 0.073 0.927 30 H 0.213 0.787 31 H 0.229 0.771 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.517 3.428 7.279 14.880 hybrid contribution 1.517 -0.829 -0.014 1.729 sum -11.000 2.599 7.266 13.436 Atomic orbital electron populations 1.21658 0.93085 1.02486 1.01253 1.22080 0.96748 0.87361 1.00774 1.60363 1.22672 1.19469 1.17615 1.19225 0.81548 0.93697 0.95170 1.21362 0.93895 1.45142 0.95693 0.90827 1.25975 0.95022 0.95129 1.03473 1.70117 0.99207 1.49276 1.38989 0.85363 0.77062 0.79306 0.78473 1.18879 1.21106 1.18924 1.21132 0.94076 0.94373 0.89721 1.68541 1.18608 1.33865 1.01097 1.24212 0.97156 0.94899 0.95344 1.24323 0.93891 0.93928 0.99562 1.68249 1.18745 1.30043 0.98573 1.22164 0.94982 0.91696 0.94863 1.20083 0.96188 0.96687 0.93256 1.21662 0.92127 1.01539 1.02783 1.21693 0.99587 0.94707 1.02776 0.94481 0.91437 0.90332 0.95706 0.90541 0.99309 1.01633 0.92659 0.78712 0.77133 0.89333 0.91891 0.90391 0.93548 0.91604 0.95514 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.94 71.98 0.72 -3.28 16 2 C 0.06 2.34 5.49 86.31 0.47 2.81 16 3 N -0.48 -21.61 3.11 -705.77 -2.19 -23.80 16 4 C 0.23 12.74 4.56 85.56 0.39 13.13 16 5 C -0.52 -29.59 8.24 25.60 0.21 -29.38 16 6 H 0.07 3.97 7.30 -2.91 -0.02 3.95 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 9 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 13 C 0.24 9.85 4.66 133.02 0.62 10.47 16 14 N -0.50 -20.13 9.61 -192.64 -1.85 -21.99 16 15 C 0.05 1.33 11.22 84.62 0.95 2.28 16 16 C 0.04 1.09 11.21 84.62 0.95 2.04 16 17 N -0.44 -13.81 10.06 -182.77 -1.84 -15.64 16 18 C 0.10 3.76 5.48 42.80 0.23 3.99 16 19 C -0.04 -1.36 3.13 -11.54 -0.04 -1.39 16 20 C -0.12 -3.10 9.10 71.98 0.65 -2.45 16 21 C -0.13 -3.85 9.09 71.98 0.65 -3.20 16 22 H 0.04 1.15 7.83 -2.39 -0.02 1.13 16 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.02 1.05 7.42 -2.39 -0.02 1.03 16 26 H 0.08 3.33 6.58 -2.39 -0.02 3.32 16 27 H -0.01 -0.69 8.06 -2.38 -0.02 -0.71 16 28 H -0.03 -2.13 8.12 -2.39 -0.02 -2.15 16 29 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.20 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.21 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.09 3.29 6.91 -2.39 -0.02 3.27 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.80 8.02 -2.39 -0.02 1.78 16 37 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -69.51 316.14 3.72 -65.79 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.02 Total: 11.06 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 6.28 Total: -4.40 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -5.60 Total: -118.47 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.51 3.72 -65.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699522110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.280 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds