Wall clock time and date at job start Mon Mar 30 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00132 * 2 1 4 4 H 1.48504 * 109.47260 * 84.78424 * 3 2 1 5 5 H 1.48509 * 109.47371 * 204.78239 * 3 2 1 6 6 H 1.48492 * 109.47367 * 324.78203 * 3 2 1 7 7 C 1.38814 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99695 * 20.91801 * 7 2 1 9 9 N 1.36931 * 120.00117 * 200.92409 * 7 2 1 10 10 C 1.46497 * 120.00119 * 42.39998 * 9 7 2 11 11 C 1.53005 * 109.47007 * 90.00212 * 10 9 7 12 12 H 1.08999 * 109.46693 * 304.99852 * 11 10 9 13 13 C 1.52998 * 109.47221 * 64.99929 * 11 10 9 14 14 C 1.53007 * 109.46885 * 119.99741 * 13 11 10 15 15 C 1.52995 * 109.47415 * 299.99916 * 14 13 11 16 16 C 1.53007 * 109.46882 * 60.00076 * 15 14 13 17 17 C 1.53000 * 109.46981 * 0.02562 * 16 15 14 18 18 C 1.52993 * 109.47417 * 60.00128 * 17 16 15 19 19 C 1.52998 * 109.46935 * 299.99718 * 18 17 16 20 20 C 1.46505 * 120.00079 * 222.39851 * 9 7 2 21 21 C 1.53008 * 117.49707 * 14.10143 * 20 9 7 22 22 C 1.53005 * 117.49812 * 305.44415 * 20 9 7 23 23 H 0.96996 * 119.99609 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46907 * 209.99936 * 10 9 7 25 25 H 1.08995 * 109.47115 * 330.00244 * 10 9 7 26 26 H 1.08997 * 109.47249 * 239.99691 * 13 11 10 27 27 H 1.09003 * 109.47213 * 0.02562 * 13 11 10 28 28 H 1.09003 * 109.47002 * 179.97438 * 14 13 11 29 29 H 1.08995 * 109.47045 * 179.97438 * 15 14 13 30 30 H 1.09000 * 109.47283 * 300.00565 * 15 14 13 31 31 H 1.08997 * 109.46916 * 239.99744 * 16 15 14 32 32 H 1.09000 * 109.47185 * 120.00193 * 16 15 14 33 33 H 1.09003 * 109.46491 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.47482 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.47422 * 59.99907 * 18 17 16 36 36 H 1.08997 * 109.47249 * 239.99700 * 19 18 17 37 37 H 1.09009 * 109.47027 * 120.00049 * 19 18 17 38 38 H 1.08994 * 115.54942 * 159.76522 * 20 9 7 39 39 H 1.09002 * 117.49560 * 359.97438 * 21 20 9 40 40 H 1.08995 * 117.49879 * 145.02096 * 21 20 9 41 41 H 1.09003 * 117.49326 * 214.97968 * 22 20 9 42 42 H 1.08995 * 117.49940 * 359.96788 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3875 2.1100 1.3943 5 1 3.5986 1.4108 -0.5869 6 1 1.5072 2.6182 -0.8073 7 6 2.0103 -1.2022 -0.0005 8 1 1.5236 -2.1065 -0.3349 9 7 3.3119 -1.2415 0.4229 10 6 3.7168 -0.4943 1.6162 11 6 3.5562 -1.3814 2.8524 12 1 2.5337 -1.7560 2.9003 13 6 4.5275 -2.5602 2.7639 14 6 5.4783 -2.5285 3.9623 15 6 6.2660 -1.2169 3.9539 16 6 5.2945 -0.0381 4.0423 17 6 3.8594 -0.5640 4.1103 18 6 3.6991 -1.4507 5.3467 19 6 4.6705 -2.6295 5.2583 20 6 4.2995 -2.0308 -0.3172 21 6 3.9125 -2.5143 -1.7164 22 6 3.9870 -3.5095 -0.5557 23 1 -0.4849 0.8400 0.0004 24 1 4.7595 -0.1919 1.5190 25 1 3.0899 0.3912 1.7205 26 1 3.9664 -3.4946 2.7699 27 1 5.1037 -2.4878 1.8414 28 1 6.1701 -3.3686 3.8995 29 1 6.9430 -1.1942 4.8078 30 1 6.8418 -1.1447 3.0312 31 1 5.4091 0.5939 3.1617 32 1 5.5105 0.5443 4.9380 33 1 3.1674 0.2759 4.1728 34 1 2.6768 -1.8257 5.3949 35 1 3.9153 -0.8681 6.2422 36 1 4.1094 -3.5639 5.2647 37 1 5.3481 -2.6067 6.1118 38 1 5.3412 -1.7571 -0.1496 39 1 2.9229 -2.2454 -2.0859 40 1 4.6996 -2.5591 -2.4690 41 1 4.8232 -4.2086 -0.5452 42 1 3.0469 -3.8951 -0.1614 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706771068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:05 Heat of formation + Delta-G solvation = 24.126633 kcal Electronic energy + Delta-G solvation = -19897.330417 eV Core-core repulsion = 17263.499712 eV Total energy + Delta-G solvation = -2633.830705 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.21214 -37.08227 -33.72676 -31.89262 -30.99710 -30.60195 -29.71598 -25.22964 -23.88474 -22.30966 -21.69152 -21.28611 -20.70096 -19.73823 -16.58362 -16.14334 -16.03256 -15.52469 -15.38439 -14.83900 -14.51577 -13.62499 -12.82029 -12.63752 -12.44171 -12.32018 -11.83427 -11.82643 -11.74352 -11.63110 -11.62035 -11.28287 -11.19842 -10.77168 -10.68968 -10.57976 -10.17220 -10.01604 -9.82741 -9.61366 -9.52816 -9.31749 -9.26417 -9.12156 -8.44914 -6.55469 -6.00274 -3.46310 3.31510 3.46460 3.53743 4.52439 4.78314 4.90010 4.90642 4.96174 5.02278 5.33129 5.53112 5.57605 5.66375 5.68070 5.68432 5.73155 5.80042 5.84447 5.90243 5.95363 5.99749 6.05092 6.13249 6.17157 6.28475 6.34348 6.45743 6.46882 6.48893 6.52901 6.61626 6.63969 6.67359 6.81366 6.89644 6.97136 7.06763 7.17797 7.20472 8.09251 8.44372 9.03110 9.71622 10.14862 11.14531 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.009536 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.174878 B = 2935.559584 C = 3572.727188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.042 3.958 3 Si 0.876 3.124 4 H -0.285 1.285 5 H -0.268 1.268 6 H -0.301 1.301 7 C -0.266 4.266 8 H 0.076 0.924 9 N -0.571 5.571 10 C 0.148 3.852 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.097 4.097 14 C -0.088 4.088 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.084 4.084 18 C -0.110 4.110 19 C -0.109 4.109 20 C 0.127 3.873 21 C -0.198 4.198 22 C -0.218 4.218 23 H 0.263 0.737 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.391 -2.867 8.087 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.213 1.213 5 H -0.192 1.192 6 H -0.229 1.229 7 C -0.394 4.394 8 H 0.094 0.906 9 N -0.289 5.289 10 C 0.023 3.977 11 C -0.116 4.116 12 H 0.093 0.907 13 C -0.134 4.134 14 C -0.106 4.106 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.103 4.103 18 C -0.148 4.148 19 C -0.147 4.147 20 C 0.018 3.982 21 C -0.237 4.237 22 C -0.259 4.259 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.208 -2.726 8.083 14.085 hybrid contribution 0.273 0.897 -0.046 0.939 sum 11.481 -1.829 8.037 14.134 Atomic orbital electron populations 1.69861 1.06050 1.26747 1.51201 1.25545 0.95013 0.97820 0.97517 0.86898 0.80840 0.84601 0.77113 1.21257 1.19212 1.22928 1.18593 0.85323 0.93986 1.41532 0.90626 1.43673 1.05864 1.54929 1.24426 1.21268 0.97058 0.93702 0.85687 1.21648 0.99832 0.95947 0.94152 0.90701 1.21521 0.96816 0.98254 0.96830 1.21088 0.96933 0.96837 0.95769 1.21483 0.97291 0.94964 1.00866 1.21560 0.95136 0.97320 1.01168 1.21071 0.96128 0.97860 0.95238 1.21499 0.99293 0.96619 0.97369 1.21513 0.97833 0.98351 0.97012 1.21044 0.92067 0.91152 0.93888 1.23154 1.03122 1.05466 0.91956 1.23323 1.02217 0.95067 1.05294 0.92706 0.94262 0.93049 0.92855 0.91419 0.92163 0.92880 0.92388 0.91933 0.92840 0.91663 0.92161 0.92811 0.92421 0.92908 0.89476 0.87940 0.90799 0.90980 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.97 55.49 0.78 -26.33 16 2 C 0.04 1.20 5.29 -17.43 -0.09 1.11 16 3 Si 0.88 22.14 25.20 -169.99 -4.28 17.86 16 4 H -0.28 -6.99 6.71 56.52 0.38 -6.61 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 7 C -0.27 -7.24 8.33 -15.06 -0.13 -7.36 16 8 H 0.08 2.26 7.59 -52.48 -0.40 1.86 16 9 N -0.57 -13.21 2.23 -165.65 -0.37 -13.58 16 10 C 0.15 3.12 3.36 -4.04 -0.01 3.11 16 11 C -0.10 -1.76 2.43 -90.59 -0.22 -1.98 16 12 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 13 C -0.10 -1.58 5.02 -26.73 -0.13 -1.71 16 14 C -0.09 -1.19 3.20 -90.59 -0.29 -1.48 16 15 C -0.11 -1.40 5.71 -26.73 -0.15 -1.56 16 16 C -0.11 -1.61 5.36 -26.73 -0.14 -1.76 16 17 C -0.08 -1.33 2.72 -90.60 -0.25 -1.58 16 18 C -0.11 -1.53 5.71 -26.74 -0.15 -1.68 16 19 C -0.11 -1.41 5.71 -26.71 -0.15 -1.56 16 20 C 0.13 2.56 4.64 -67.92 -0.32 2.25 16 21 C -0.20 -3.88 9.84 -26.69 -0.26 -4.14 16 22 C -0.22 -4.07 10.09 -26.69 -0.27 -4.34 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.04 0.77 6.60 -51.93 -0.34 0.42 16 25 H 0.05 1.21 3.82 -51.93 -0.20 1.01 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.14 5.35 -51.93 -0.28 0.86 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.93 6.54 -51.93 -0.34 0.59 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.09 1.59 7.80 -51.93 -0.40 1.18 16 39 H 0.10 2.28 7.05 -51.93 -0.37 1.92 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.81 7.98 -51.93 -0.41 1.39 16 LS Contribution 306.63 15.07 4.62 4.62 Total: -1.00 -28.51 306.63 -9.22 -37.73 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.40 Total: 2.39 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -2.57 Total: -22.68 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.41 Total: -39.91 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.28 Total: 17.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.51 -9.22 -37.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706771068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.859 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds