Wall clock time and date at job start Mon Mar 30 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00132 * 2 1 4 4 H 1.48504 * 109.47260 * 84.78424 * 3 2 1 5 5 H 1.48509 * 109.47371 * 204.78239 * 3 2 1 6 6 H 1.48492 * 109.47367 * 324.78203 * 3 2 1 7 7 C 1.38814 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99695 * 20.91801 * 7 2 1 9 9 N 1.36931 * 120.00117 * 200.92409 * 7 2 1 10 10 C 1.46497 * 120.00119 * 42.39998 * 9 7 2 11 11 C 1.53005 * 109.47007 * 90.00212 * 10 9 7 12 12 H 1.08999 * 109.46693 * 304.99852 * 11 10 9 13 13 C 1.52998 * 109.47221 * 64.99929 * 11 10 9 14 14 C 1.53007 * 109.46885 * 119.99741 * 13 11 10 15 15 C 1.52995 * 109.47415 * 299.99916 * 14 13 11 16 16 C 1.53007 * 109.46882 * 60.00076 * 15 14 13 17 17 C 1.53000 * 109.46981 * 0.02562 * 16 15 14 18 18 C 1.52993 * 109.47417 * 60.00128 * 17 16 15 19 19 C 1.52998 * 109.46935 * 299.99718 * 18 17 16 20 20 C 1.46505 * 120.00079 * 222.39851 * 9 7 2 21 21 C 1.53008 * 117.49707 * 14.10143 * 20 9 7 22 22 C 1.53005 * 117.49812 * 305.44415 * 20 9 7 23 23 H 0.96996 * 119.99609 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46907 * 209.99936 * 10 9 7 25 25 H 1.08995 * 109.47115 * 330.00244 * 10 9 7 26 26 H 1.08997 * 109.47249 * 239.99691 * 13 11 10 27 27 H 1.09003 * 109.47213 * 0.02562 * 13 11 10 28 28 H 1.09003 * 109.47002 * 179.97438 * 14 13 11 29 29 H 1.08995 * 109.47045 * 179.97438 * 15 14 13 30 30 H 1.09000 * 109.47283 * 300.00565 * 15 14 13 31 31 H 1.08997 * 109.46916 * 239.99744 * 16 15 14 32 32 H 1.09000 * 109.47185 * 120.00193 * 16 15 14 33 33 H 1.09003 * 109.46491 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.47482 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.47422 * 59.99907 * 18 17 16 36 36 H 1.08997 * 109.47249 * 239.99700 * 19 18 17 37 37 H 1.09009 * 109.47027 * 120.00049 * 19 18 17 38 38 H 1.08994 * 115.54942 * 159.76522 * 20 9 7 39 39 H 1.09002 * 117.49560 * 359.97438 * 21 20 9 40 40 H 1.08995 * 117.49879 * 145.02096 * 21 20 9 41 41 H 1.09003 * 117.49326 * 214.97968 * 22 20 9 42 42 H 1.08995 * 117.49940 * 359.96788 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3875 2.1100 1.3943 5 1 3.5986 1.4108 -0.5869 6 1 1.5072 2.6182 -0.8073 7 6 2.0103 -1.2022 -0.0005 8 1 1.5236 -2.1065 -0.3349 9 7 3.3119 -1.2415 0.4229 10 6 3.7168 -0.4943 1.6162 11 6 3.5562 -1.3814 2.8524 12 1 2.5337 -1.7560 2.9003 13 6 4.5275 -2.5602 2.7639 14 6 5.4783 -2.5285 3.9623 15 6 6.2660 -1.2169 3.9539 16 6 5.2945 -0.0381 4.0423 17 6 3.8594 -0.5640 4.1103 18 6 3.6991 -1.4507 5.3467 19 6 4.6705 -2.6295 5.2583 20 6 4.2995 -2.0308 -0.3172 21 6 3.9125 -2.5143 -1.7164 22 6 3.9870 -3.5095 -0.5557 23 1 -0.4849 0.8400 0.0004 24 1 4.7595 -0.1919 1.5190 25 1 3.0899 0.3912 1.7205 26 1 3.9664 -3.4946 2.7699 27 1 5.1037 -2.4878 1.8414 28 1 6.1701 -3.3686 3.8995 29 1 6.9430 -1.1942 4.8078 30 1 6.8418 -1.1447 3.0312 31 1 5.4091 0.5939 3.1617 32 1 5.5105 0.5443 4.9380 33 1 3.1674 0.2759 4.1728 34 1 2.6768 -1.8257 5.3949 35 1 3.9153 -0.8681 6.2422 36 1 4.1094 -3.5639 5.2647 37 1 5.3481 -2.6067 6.1118 38 1 5.3412 -1.7571 -0.1496 39 1 2.9229 -2.2454 -2.0859 40 1 4.6996 -2.5591 -2.4690 41 1 4.8232 -4.2086 -0.5452 42 1 3.0469 -3.8951 -0.1614 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706771068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:05 Heat of formation + Delta-G solvation = 9.495703 kcal Electronic energy + Delta-G solvation = -19897.964862 eV Core-core repulsion = 17263.499712 eV Total energy + Delta-G solvation = -2634.465150 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45744 -38.75564 -35.44615 -33.82340 -32.22288 -31.66287 -31.33636 -27.02604 -25.64048 -23.35703 -23.09420 -22.69091 -22.08658 -21.56655 -18.49982 -17.44496 -17.29480 -17.12868 -16.95916 -16.33866 -15.87401 -15.36111 -14.66024 -14.29437 -14.00189 -13.85147 -13.31840 -12.96726 -12.86416 -12.83977 -12.81618 -12.78184 -12.67805 -12.53285 -12.39482 -12.17682 -11.90595 -11.55366 -11.41360 -11.27035 -10.94762 -10.68347 -10.57256 -10.52129 -10.49087 -8.46902 -8.21281 -5.63808 1.27897 1.37452 1.49699 2.40206 2.99672 3.21003 3.40858 3.74864 3.80509 3.84556 4.26534 4.31440 4.39159 4.41686 4.46494 4.51779 4.54656 4.56407 4.57841 4.60278 4.63833 4.74878 4.84613 4.85695 4.95628 4.99133 5.02880 5.17432 5.21905 5.28066 5.34191 5.37874 5.49178 5.54336 5.54968 5.56833 5.65912 5.69105 5.72778 5.96149 6.20600 7.03312 7.64798 8.07253 8.97618 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.009536 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.174878 B = 2935.559584 C = 3572.727188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.015 4.015 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.256 1.256 6 H -0.308 1.308 7 C -0.245 4.245 8 H 0.033 0.967 9 N -0.583 5.583 10 C 0.146 3.854 11 C -0.089 4.089 12 H 0.027 0.973 13 C -0.090 4.090 14 C -0.084 4.084 15 C -0.105 4.105 16 C -0.113 4.113 17 C -0.086 4.086 18 C -0.109 4.109 19 C -0.108 4.108 20 C 0.114 3.886 21 C -0.201 4.201 22 C -0.200 4.200 23 H 0.262 0.738 24 H 0.065 0.935 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.463 -2.880 9.344 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.212 4.212 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.180 1.180 6 H -0.237 1.237 7 C -0.375 4.375 8 H 0.050 0.950 9 N -0.302 5.302 10 C 0.022 3.978 11 C -0.110 4.110 12 H 0.045 0.955 13 C -0.128 4.128 14 C -0.102 4.102 15 C -0.143 4.143 16 C -0.150 4.150 17 C -0.105 4.105 18 C -0.147 4.147 19 C -0.145 4.145 20 C 0.006 3.994 21 C -0.239 4.239 22 C -0.241 4.241 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.321 -2.757 9.348 18.158 hybrid contribution -1.044 0.774 -0.449 1.375 sum 14.277 -1.983 8.899 16.940 Atomic orbital electron populations 1.69992 1.07739 1.27355 1.54164 1.26138 0.95567 1.01155 0.98310 0.85860 0.79665 0.80308 0.77367 1.20239 1.17977 1.23698 1.18349 0.87157 0.92314 1.39702 0.94967 1.43751 1.05020 1.55671 1.25780 1.21336 0.97606 0.92990 0.85851 1.21480 0.97989 0.96872 0.94633 0.95460 1.21435 0.96633 0.96121 0.98601 1.21088 0.96564 0.98304 0.94285 1.21493 0.97032 0.93390 1.02345 1.21560 0.93620 0.98050 1.01778 1.21059 0.97486 0.97206 0.94732 1.21493 0.99010 0.97108 0.97064 1.21522 0.97834 0.97392 0.97758 1.21361 0.92678 0.91426 0.93896 1.23155 1.02282 1.05782 0.92707 1.23244 1.02034 0.94888 1.03903 0.92903 0.91714 0.95712 0.94405 0.91480 0.90127 0.90315 0.91894 0.92874 0.90822 0.93685 0.93814 0.90723 0.92803 0.90274 0.86075 0.91734 0.87210 0.87139 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.34 13.97 21.65 0.30 -60.04 16 2 C -0.02 -0.90 5.29 84.86 0.45 -0.45 16 3 Si 0.94 46.98 25.20 68.60 1.73 48.71 16 4 H -0.28 -13.19 6.71 99.48 0.67 -12.53 16 5 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 7 C -0.25 -13.99 8.33 84.04 0.70 -13.29 16 8 H 0.03 2.09 7.59 -2.91 -0.02 2.07 16 9 N -0.58 -27.17 2.23 -678.01 -1.51 -28.68 16 10 C 0.15 6.11 3.36 86.38 0.29 6.40 16 11 C -0.09 -3.31 2.43 -10.77 -0.03 -3.34 16 12 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 13 C -0.09 -2.80 5.02 30.60 0.15 -2.65 16 14 C -0.08 -1.96 3.20 -10.78 -0.03 -2.00 16 15 C -0.11 -2.22 5.71 30.60 0.17 -2.05 16 16 C -0.11 -2.80 5.36 30.60 0.16 -2.64 16 17 C -0.09 -2.64 2.72 -10.78 -0.03 -2.66 16 18 C -0.11 -2.84 5.71 30.59 0.17 -2.66 16 19 C -0.11 -2.41 5.71 30.61 0.17 -2.24 16 20 C 0.11 4.39 4.64 44.99 0.21 4.59 16 21 C -0.20 -7.63 9.84 30.62 0.30 -7.32 16 22 C -0.20 -7.20 10.09 30.62 0.31 -6.90 16 23 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 24 H 0.06 2.37 6.60 -2.39 -0.02 2.35 16 25 H 0.02 1.17 3.82 -2.39 -0.01 1.16 16 26 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 27 H 0.07 2.08 5.35 -2.39 -0.01 2.07 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.42 6.54 -2.39 -0.02 1.40 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.12 3.91 7.80 -2.39 -0.02 3.89 16 39 H 0.06 2.96 7.05 -2.39 -0.02 2.94 16 40 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.06 2.39 7.98 -2.39 -0.02 2.37 16 Total: -1.00 -65.59 306.63 4.46 -61.13 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.93 Total: 16.08 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 3.01 Total: -37.20 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.21 Total: -88.72 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.73 Total: 48.71 kcal Total: -65.59 4.46 -61.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706771068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.629 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds