Wall clock time and date at job start Mon Mar 30 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00477 * 2 1 4 4 H 1.48497 * 109.47638 * 240.00590 * 3 2 1 5 5 H 1.48505 * 109.46655 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47526 * 119.99705 * 3 2 1 7 7 C 1.37880 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00594 * 173.59782 * 7 2 1 9 9 C 1.50707 * 120.00059 * 353.59431 * 7 2 1 10 10 C 1.52994 * 115.54837 * 85.44454 * 9 7 2 11 11 N 1.46902 * 109.46901 * 65.05437 * 10 9 7 12 12 C 1.46899 * 110.99917 * 185.34670 * 11 10 9 13 13 C 1.53004 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46934 * 180.02562 * 13 12 11 15 15 H 1.09004 * 115.54923 * 330.66424 * 14 13 12 16 16 C 1.52995 * 117.50066 * 116.38098 * 14 13 12 17 17 C 1.53005 * 60.00294 * 107.48425 * 16 14 13 18 18 H 1.09000 * 117.51432 * 107.47727 * 17 16 14 19 19 C 1.52993 * 117.49879 * 252.50936 * 17 16 14 20 20 C 1.53003 * 117.49717 * 197.36612 * 19 17 16 21 21 C 1.53005 * 117.49854 * 128.70771 * 19 17 16 22 22 C 1.52996 * 117.49805 * 231.11961 * 9 7 2 23 23 C 1.53002 * 117.49870 * 299.78155 * 9 7 2 24 24 H 0.96994 * 119.99624 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47787 * 305.05505 * 10 9 7 26 26 H 1.08998 * 109.47472 * 185.05184 * 10 9 7 27 27 H 1.00895 * 111.00188 * 61.39394 * 11 10 9 28 28 H 1.08994 * 109.47614 * 299.99659 * 12 11 10 29 29 H 1.09001 * 109.47382 * 60.00333 * 12 11 10 30 30 H 1.08996 * 109.47257 * 300.00067 * 13 12 11 31 31 H 1.09001 * 109.47154 * 60.00245 * 13 12 11 32 32 H 1.09000 * 117.49627 * 214.97739 * 16 14 13 33 33 H 1.09004 * 117.50056 * 359.97438 * 16 14 13 34 34 H 1.08997 * 115.55511 * 343.03914 * 19 17 16 35 35 H 1.09003 * 117.49715 * 0.02562 * 20 19 17 36 36 H 1.08999 * 117.49880 * 145.01955 * 20 19 17 37 37 H 1.08998 * 117.49951 * 214.97814 * 21 19 17 38 38 H 1.08998 * 117.49416 * 359.97438 * 21 19 17 39 39 H 1.09006 * 117.49769 * 214.99765 * 22 9 7 40 40 H 1.09003 * 117.50105 * 0.02562 * 22 9 7 41 41 H 1.09006 * 117.49920 * 359.97262 * 23 9 7 42 42 H 1.08993 * 117.50367 * 144.96837 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1971 -0.1048 9 6 1.2581 -2.4952 0.1445 10 6 0.7037 -3.0861 -1.1533 11 7 1.8169 -3.4573 -2.0370 12 6 1.3227 -3.9110 -3.3439 13 6 2.5084 -4.2874 -4.2348 14 6 1.9937 -4.7593 -5.5962 15 1 1.0089 -5.2266 -5.5903 16 6 2.3741 -3.9272 -6.8224 17 6 3.0233 -5.2938 -6.5940 18 1 2.7156 -6.1124 -7.2446 19 6 4.4884 -5.3152 -6.1541 20 6 5.2551 -6.6295 -6.3147 21 6 4.8437 -6.1484 -4.9210 22 6 1.7457 -3.4739 1.2147 23 6 0.4400 -2.7019 1.4208 24 1 -0.4849 0.8400 0.0004 25 1 0.0763 -2.3463 -1.6505 26 1 0.1102 -3.9714 -0.9251 27 1 2.4008 -4.1593 -1.6077 28 1 0.6800 -4.7806 -3.2075 29 1 0.7544 -3.1095 -3.8157 30 1 3.1509 -3.4176 -4.3712 31 1 3.0771 -5.0889 -3.7632 32 1 1.6394 -3.8466 -7.6235 33 1 2.9907 -3.0432 -6.6593 34 1 5.0401 -4.3883 -6.3111 35 1 4.7157 -7.4787 -6.7343 36 1 6.3112 -6.5672 -6.5772 37 1 5.6293 -5.7699 -4.2671 38 1 4.0335 -6.6809 -4.4230 39 1 1.6715 -4.5388 0.9941 40 1 2.6061 -3.1765 1.8141 41 1 0.4421 -1.8969 2.1559 42 1 -0.4933 -3.2584 1.3359 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712766627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:05 Heat of formation + Delta-G solvation = 62.300914 kcal Electronic energy + Delta-G solvation = -17994.350390 eV Core-core repulsion = 15362.175046 eV Total energy + Delta-G solvation = -2632.175344 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.02844 -37.00965 -35.60519 -34.22965 -31.77521 -29.65652 -25.63671 -24.43174 -23.68472 -22.58329 -21.83055 -21.08308 -20.81817 -19.25785 -18.78898 -16.21472 -15.71331 -15.43858 -14.96891 -14.47249 -14.25732 -14.01705 -13.62642 -13.10158 -12.93065 -12.70294 -11.92889 -11.70209 -11.49939 -11.39457 -11.19478 -11.11081 -10.89637 -10.85654 -10.66743 -10.59081 -10.46586 -10.38969 -10.10955 -9.69739 -9.45344 -9.30405 -8.73267 -8.30434 -7.99335 -7.44144 -5.89424 -3.90507 3.40228 3.43810 3.47425 3.55047 3.92311 4.46159 4.52844 4.65036 4.83368 4.88979 5.05891 5.17535 5.28184 5.37505 5.40697 5.47709 5.53399 5.54582 5.66880 5.79371 5.84547 5.90925 6.03259 6.06985 6.10218 6.19118 6.20802 6.22998 6.40526 6.49096 6.56671 6.62896 6.72601 6.79624 6.97078 7.17774 7.53244 7.66152 8.03270 8.05759 8.26895 8.63139 9.08081 9.72113 11.20643 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.004573 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.030697 B = 6122.086667 C = 6491.263762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.468 4.468 8 H 0.058 0.942 9 C 0.053 3.947 10 C 0.108 3.892 11 N -0.670 5.670 12 C 0.063 3.937 13 C -0.085 4.085 14 C -0.138 4.138 15 H 0.100 0.900 16 C -0.172 4.172 17 C -0.127 4.127 18 H 0.100 0.900 19 C -0.119 4.119 20 C -0.183 4.183 21 C -0.172 4.172 22 C -0.216 4.216 23 C -0.159 4.159 24 H 0.257 0.743 25 H 0.075 0.925 26 H -0.008 1.008 27 H 0.328 0.672 28 H 0.013 0.987 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -11.298 -11.364 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.021 4.021 11 N -0.299 5.299 12 C -0.067 4.067 13 C -0.123 4.123 14 C -0.157 4.157 15 H 0.118 0.882 16 C -0.209 4.209 17 C -0.145 4.145 18 H 0.118 0.882 19 C -0.137 4.137 20 C -0.220 4.220 21 C -0.209 4.209 22 C -0.253 4.253 23 C -0.197 4.197 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.010 0.990 27 H 0.144 0.856 28 H 0.031 0.969 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.125 -10.506 -11.578 16.453 hybrid contribution -0.078 0.045 0.205 0.224 sum 5.048 -10.461 -11.372 16.256 Atomic orbital electron populations 1.70001 1.05802 1.26182 1.50492 1.24933 0.94751 0.98682 0.95107 0.86733 0.79638 0.83470 0.78534 1.20287 1.21562 1.20478 1.20267 0.92777 0.88409 1.49181 0.92350 1.18828 0.97040 0.93686 0.85237 1.21527 0.90677 0.95726 0.94135 1.60242 1.21934 1.44796 1.02966 1.21900 0.95678 0.97709 0.91382 1.21188 0.97929 1.01036 0.92143 1.22401 0.98566 1.03204 0.91533 0.88199 1.23116 1.03310 0.94419 1.00044 1.21800 0.91861 0.97779 1.03023 0.88167 1.21659 0.94129 0.95323 1.02589 1.22989 1.00323 0.97778 1.00872 1.22991 1.03336 1.03801 0.90794 1.22987 0.98502 0.95406 1.08434 1.22515 0.91926 1.01173 1.04129 0.93327 0.90664 0.98983 0.85570 0.96895 0.91498 0.90965 0.91462 0.89130 0.88566 0.87833 0.89099 0.89095 0.88726 0.88567 0.92262 0.90560 0.90099 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 12.92 55.43 0.72 -24.85 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.47 -12.96 8.74 -34.44 -0.30 -13.27 16 8 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 9 C 0.05 1.31 1.55 -155.66 -0.24 1.07 16 10 C 0.11 2.47 5.51 -3.83 -0.02 2.45 16 11 N -0.67 -13.37 6.38 -113.78 -0.73 -14.09 16 12 C 0.06 1.05 5.63 -3.82 -0.02 1.02 16 13 C -0.09 -1.18 4.71 -26.73 -0.13 -1.30 16 14 C -0.14 -1.63 5.72 -90.62 -0.52 -2.15 16 15 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 16 C -0.17 -1.89 9.90 -26.73 -0.26 -2.15 16 17 C -0.13 -1.32 5.87 -90.62 -0.53 -1.85 16 18 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.12 -1.22 5.25 -90.62 -0.48 -1.70 16 20 C -0.18 -1.64 10.25 -26.69 -0.27 -1.92 16 21 C -0.17 -1.74 8.45 -26.69 -0.23 -1.96 16 22 C -0.22 -4.77 9.96 -26.69 -0.27 -5.04 16 23 C -0.16 -3.82 9.41 -26.69 -0.25 -4.07 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.07 1.93 8.13 -51.93 -0.42 1.51 16 26 H -0.01 -0.17 8.09 -51.93 -0.42 -0.59 16 27 H 0.33 6.10 8.79 -39.29 -0.35 5.76 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.10 7.87 -51.93 -0.41 0.69 16 31 H 0.07 0.88 5.64 -51.93 -0.29 0.59 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.00 7.31 -51.93 -0.38 0.62 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -28.34 342.26 -11.21 -39.55 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.72 Total: 6.65 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -3.61 Total: -29.10 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.01 Total: -38.95 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.34 -11.21 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712766627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.854 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds