Wall clock time and date at job start Mon Mar 30 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00477 * 2 1 4 4 H 1.48497 * 109.47638 * 240.00590 * 3 2 1 5 5 H 1.48505 * 109.46655 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47526 * 119.99705 * 3 2 1 7 7 C 1.37880 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00594 * 173.59782 * 7 2 1 9 9 C 1.50707 * 120.00059 * 353.59431 * 7 2 1 10 10 C 1.52994 * 115.54837 * 85.44454 * 9 7 2 11 11 N 1.46902 * 109.46901 * 65.05437 * 10 9 7 12 12 C 1.46899 * 110.99917 * 185.34670 * 11 10 9 13 13 C 1.53004 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46934 * 180.02562 * 13 12 11 15 15 H 1.09004 * 115.54923 * 330.66424 * 14 13 12 16 16 C 1.52995 * 117.50066 * 116.38098 * 14 13 12 17 17 C 1.53005 * 60.00294 * 107.48425 * 16 14 13 18 18 H 1.09000 * 117.51432 * 107.47727 * 17 16 14 19 19 C 1.52993 * 117.49879 * 252.50936 * 17 16 14 20 20 C 1.53003 * 117.49717 * 197.36612 * 19 17 16 21 21 C 1.53005 * 117.49854 * 128.70771 * 19 17 16 22 22 C 1.52996 * 117.49805 * 231.11961 * 9 7 2 23 23 C 1.53002 * 117.49870 * 299.78155 * 9 7 2 24 24 H 0.96994 * 119.99624 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47787 * 305.05505 * 10 9 7 26 26 H 1.08998 * 109.47472 * 185.05184 * 10 9 7 27 27 H 1.00895 * 111.00188 * 61.39394 * 11 10 9 28 28 H 1.08994 * 109.47614 * 299.99659 * 12 11 10 29 29 H 1.09001 * 109.47382 * 60.00333 * 12 11 10 30 30 H 1.08996 * 109.47257 * 300.00067 * 13 12 11 31 31 H 1.09001 * 109.47154 * 60.00245 * 13 12 11 32 32 H 1.09000 * 117.49627 * 214.97739 * 16 14 13 33 33 H 1.09004 * 117.50056 * 359.97438 * 16 14 13 34 34 H 1.08997 * 115.55511 * 343.03914 * 19 17 16 35 35 H 1.09003 * 117.49715 * 0.02562 * 20 19 17 36 36 H 1.08999 * 117.49880 * 145.01955 * 20 19 17 37 37 H 1.08998 * 117.49951 * 214.97814 * 21 19 17 38 38 H 1.08998 * 117.49416 * 359.97438 * 21 19 17 39 39 H 1.09006 * 117.49769 * 214.99765 * 22 9 7 40 40 H 1.09003 * 117.50105 * 0.02562 * 22 9 7 41 41 H 1.09006 * 117.49920 * 359.97262 * 23 9 7 42 42 H 1.08993 * 117.50367 * 144.96837 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1971 -0.1048 9 6 1.2581 -2.4952 0.1445 10 6 0.7037 -3.0861 -1.1533 11 7 1.8169 -3.4573 -2.0370 12 6 1.3227 -3.9110 -3.3439 13 6 2.5084 -4.2874 -4.2348 14 6 1.9937 -4.7593 -5.5962 15 1 1.0089 -5.2266 -5.5903 16 6 2.3741 -3.9272 -6.8224 17 6 3.0233 -5.2938 -6.5940 18 1 2.7156 -6.1124 -7.2446 19 6 4.4884 -5.3152 -6.1541 20 6 5.2551 -6.6295 -6.3147 21 6 4.8437 -6.1484 -4.9210 22 6 1.7457 -3.4739 1.2147 23 6 0.4400 -2.7019 1.4208 24 1 -0.4849 0.8400 0.0004 25 1 0.0763 -2.3463 -1.6505 26 1 0.1102 -3.9714 -0.9251 27 1 2.4008 -4.1593 -1.6077 28 1 0.6800 -4.7806 -3.2075 29 1 0.7544 -3.1095 -3.8157 30 1 3.1509 -3.4176 -4.3712 31 1 3.0771 -5.0889 -3.7632 32 1 1.6394 -3.8466 -7.6235 33 1 2.9907 -3.0432 -6.6593 34 1 5.0401 -4.3883 -6.3111 35 1 4.7157 -7.4787 -6.7343 36 1 6.3112 -6.5672 -6.5772 37 1 5.6293 -5.7699 -4.2671 38 1 4.0335 -6.6809 -4.4230 39 1 1.6715 -4.5388 0.9941 40 1 2.6061 -3.1765 1.8141 41 1 0.4421 -1.8969 2.1559 42 1 -0.4933 -3.2584 1.3359 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712766627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:05 Heat of formation + Delta-G solvation = 48.464197 kcal Electronic energy + Delta-G solvation = -17994.950395 eV Core-core repulsion = 15362.175046 eV Total energy + Delta-G solvation = -2632.775349 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91996 -38.78823 -36.67873 -35.56780 -33.88641 -31.00612 -27.64496 -26.07089 -24.54672 -23.64212 -22.99302 -22.65775 -21.98114 -20.88284 -19.99998 -18.06017 -16.96821 -16.51248 -16.40322 -16.09788 -15.65333 -15.46603 -14.88679 -14.78018 -14.42333 -13.80623 -13.65208 -13.12718 -12.84987 -12.73571 -12.62497 -12.52962 -12.32019 -12.27186 -12.15138 -12.02169 -11.95493 -11.54466 -11.41736 -11.26067 -10.72851 -10.54741 -10.36888 -10.26119 -9.90000 -9.03338 -8.02441 -6.08588 1.44045 1.45052 1.51903 2.48799 2.71839 3.11064 3.26862 3.28850 3.61827 3.71837 3.96896 4.00921 4.17748 4.23230 4.30022 4.38884 4.42832 4.49870 4.55867 4.63207 4.69635 4.74519 4.82281 4.84557 4.90480 4.98815 5.00797 5.05144 5.08318 5.17898 5.26288 5.29208 5.31841 5.33765 5.39404 5.50705 5.65164 5.76324 5.89127 6.38150 6.53412 6.79305 6.94717 7.56425 9.06639 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.004573 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.030697 B = 6122.086667 C = 6491.263762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.480 4.480 8 H 0.047 0.953 9 C 0.023 3.977 10 C 0.123 3.877 11 N -0.682 5.682 12 C 0.067 3.933 13 C -0.072 4.072 14 C -0.149 4.149 15 H 0.106 0.894 16 C -0.176 4.176 17 C -0.112 4.112 18 H 0.115 0.885 19 C -0.133 4.133 20 C -0.168 4.168 21 C -0.180 4.180 22 C -0.186 4.186 23 C -0.167 4.167 24 H 0.256 0.744 25 H 0.038 0.962 26 H 0.005 0.995 27 H 0.337 0.663 28 H 0.026 0.974 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 -12.711 -12.173 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.006 4.006 11 N -0.312 5.312 12 C -0.063 4.063 13 C -0.109 4.109 14 C -0.168 4.168 15 H 0.124 0.876 16 C -0.212 4.212 17 C -0.130 4.130 18 H 0.133 0.867 19 C -0.151 4.151 20 C -0.205 4.205 21 C -0.217 4.217 22 C -0.223 4.223 23 C -0.205 4.205 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.023 0.977 27 H 0.155 0.845 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.035 -11.930 -12.388 18.226 hybrid contribution -0.332 0.459 0.456 0.727 sum 5.703 -11.471 -11.932 17.506 Atomic orbital electron populations 1.70108 1.06919 1.26646 1.51563 1.25590 0.95500 1.01611 0.95102 0.85833 0.78511 0.79990 0.78553 1.20167 1.21276 1.19839 1.20513 0.92484 0.90082 1.48763 0.93443 1.18945 0.98214 0.94020 0.86542 1.21174 0.91031 0.95084 0.93343 1.60136 1.21405 1.45949 1.03742 1.21911 0.96879 0.97411 0.90063 1.21022 0.96446 1.00549 0.92919 1.22326 0.99402 1.04400 0.90678 0.87595 1.23170 1.03625 0.94522 0.99927 1.21852 0.91508 0.97701 1.01897 0.86718 1.21692 0.94260 0.95864 1.03257 1.23066 1.00846 0.97057 0.99524 1.22999 1.03410 1.04083 0.91233 1.22972 0.97108 0.96427 1.05837 1.22436 0.93464 1.01335 1.03262 0.93546 0.94311 0.97657 0.84479 0.95572 0.93313 0.92738 0.90599 0.87839 0.89494 0.88447 0.88099 0.88110 0.88919 0.88799 0.89242 0.90551 0.92450 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.53 12.92 21.45 0.28 -53.25 16 2 C 0.02 1.17 5.39 84.66 0.46 1.62 16 3 Si 0.94 44.91 29.54 68.60 2.03 46.94 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.48 -26.77 8.74 25.60 0.22 -26.55 16 8 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 9 C 0.02 1.16 1.55 -52.93 -0.08 1.08 16 10 C 0.12 5.61 5.51 86.30 0.48 6.09 16 11 N -0.68 -26.86 6.38 -513.90 -3.28 -30.13 16 12 C 0.07 2.17 5.63 86.30 0.49 2.66 16 13 C -0.07 -1.92 4.71 30.60 0.14 -1.78 16 14 C -0.15 -3.31 5.72 -10.79 -0.06 -3.38 16 15 H 0.11 2.24 8.08 -2.39 -0.02 2.22 16 16 C -0.18 -3.63 9.90 30.59 0.30 -3.32 16 17 C -0.11 -2.11 5.87 -10.79 -0.06 -2.17 16 18 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 19 C -0.13 -2.50 5.25 -10.79 -0.06 -2.56 16 20 C -0.17 -2.62 10.25 30.62 0.31 -2.31 16 21 C -0.18 -3.33 8.45 30.62 0.26 -3.07 16 22 C -0.19 -7.90 9.96 30.62 0.30 -7.60 16 23 C -0.17 -7.94 9.41 30.62 0.29 -7.66 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.04 2.03 8.13 -2.39 -0.02 2.01 16 26 H 0.01 0.23 8.09 -2.39 -0.02 0.21 16 27 H 0.34 12.09 8.79 -89.70 -0.79 11.30 16 28 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.65 7.87 -2.39 -0.02 1.63 16 31 H 0.08 1.89 5.64 -2.39 -0.01 1.88 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.95 8.03 -2.39 -0.02 1.94 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.77 7.31 -2.39 -0.02 1.76 16 39 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 42 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -60.12 342.26 2.20 -57.92 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.18 Total: 27.46 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 2.99 Total: -48.93 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -3.00 Total: -83.39 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -60.12 2.20 -57.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712766627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.384 kcal (2) G-P(sol) polarization free energy of solvation -60.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds