Wall clock time and date at job start Mon Mar 30 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48502 * 109.47466 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47599 * 300.00392 * 3 2 1 6 6 H 1.48508 * 109.46975 * 59.99895 * 3 2 1 7 7 C 1.37874 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00390 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99875 * 359.71986 * 7 2 1 10 10 N 1.46898 * 109.47258 * 174.98630 * 9 7 2 11 11 C 1.46907 * 111.00127 * 162.29668 * 10 9 7 12 12 C 1.52998 * 109.47218 * 190.00469 * 11 10 9 13 13 C 1.52997 * 109.46780 * 180.02562 * 12 11 10 14 14 H 1.08996 * 115.54978 * 330.66312 * 13 12 11 15 15 C 1.53006 * 117.49796 * 116.38010 * 13 12 11 16 16 C 1.53000 * 60.00197 * 107.48364 * 15 13 12 17 17 H 1.08999 * 117.50325 * 252.50739 * 16 15 13 18 18 C 1.53004 * 117.51926 * 107.47627 * 16 15 13 19 19 C 1.53004 * 117.50097 * 179.97438 * 18 16 15 20 20 C 1.52995 * 117.49709 * 111.36934 * 18 16 15 21 21 C 1.46892 * 111.00290 * 286.25587 * 10 9 7 22 22 C 1.53004 * 117.50273 * 142.07092 * 21 10 9 23 23 C 1.53002 * 117.49991 * 73.41330 * 21 10 9 24 24 H 0.97001 * 120.00093 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47190 * 294.99020 * 9 7 2 26 26 H 1.08998 * 109.46878 * 54.99095 * 9 7 2 27 27 H 1.08993 * 109.47167 * 310.00455 * 11 10 9 28 28 H 1.08998 * 109.46507 * 70.00553 * 11 10 9 29 29 H 1.09007 * 109.47050 * 300.00213 * 12 11 10 30 30 H 1.08994 * 109.47150 * 59.99658 * 12 11 10 31 31 H 1.09004 * 117.49414 * 214.97397 * 15 13 12 32 32 H 1.08992 * 117.49797 * 359.97438 * 15 13 12 33 33 H 1.08999 * 115.54625 * 325.70581 * 18 16 15 34 34 H 1.09004 * 117.49517 * 0.02562 * 19 18 16 35 35 H 1.08992 * 117.49690 * 145.02419 * 19 18 16 36 36 H 1.09001 * 117.50237 * 214.98298 * 20 18 16 37 37 H 1.09002 * 117.50395 * 0.02562 * 20 18 16 38 38 H 1.08996 * 115.55148 * 287.74029 * 21 10 9 39 39 H 1.09010 * 117.49637 * 359.97438 * 22 21 10 40 40 H 1.08992 * 117.50225 * 145.01750 * 22 21 10 41 41 H 1.09007 * 117.49341 * 214.97933 * 23 21 10 42 42 H 1.08995 * 117.49888 * 359.96803 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0053 10 7 2.2004 -3.6133 -0.1176 11 6 1.5826 -4.8798 0.2977 12 6 2.6578 -5.9638 0.3957 13 6 2.0141 -7.2829 0.8276 14 1 1.1239 -7.1901 1.4495 15 6 2.0694 -8.4519 -0.1580 16 6 2.9440 -8.4676 1.0973 17 1 4.0143 -8.3073 0.9671 18 6 2.5529 -9.4314 2.2194 19 6 3.4282 -9.4473 3.4742 20 6 3.4827 -10.6162 2.4891 21 6 2.7268 -3.7080 -1.4857 22 6 4.2003 -4.0857 -1.6512 23 6 3.7417 -2.6515 -1.9269 24 1 -0.4850 0.8400 0.0004 25 1 0.6973 -2.5949 0.9393 26 1 0.5552 -2.5206 -0.8335 27 1 1.1073 -4.7505 1.2700 28 1 0.8334 -5.1763 -0.4364 29 1 3.1331 -6.0930 -0.5767 30 1 3.4070 -5.6671 1.1297 31 1 1.2151 -9.1284 -0.1846 32 1 2.5639 -8.2811 -1.1141 33 1 1.4827 -9.5918 2.3496 34 1 4.2825 -8.7707 3.5005 35 1 2.9339 -9.6176 4.4305 36 1 3.0242 -11.5559 2.7971 37 1 4.3732 -10.7088 1.8674 38 1 2.0258 -4.0762 -2.2347 39 1 4.7792 -4.2634 -0.7448 40 1 4.4686 -4.7019 -2.5092 41 1 3.7085 -2.3249 -2.9663 42 1 4.0184 -1.8858 -1.2022 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714823443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:43 Heat of formation + Delta-G solvation = 69.008226 kcal Electronic energy + Delta-G solvation = -17993.092139 eV Core-core repulsion = 15361.207646 eV Total energy + Delta-G solvation = -2631.884493 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.82288 -37.65787 -35.71193 -33.60728 -32.50346 -29.75271 -26.37190 -23.75416 -22.77720 -22.36401 -22.20220 -21.61142 -20.20222 -20.10812 -19.28680 -16.48181 -15.80646 -15.33937 -14.86731 -14.78285 -14.55508 -13.97659 -13.49012 -13.05766 -12.83019 -12.57368 -11.97794 -11.85691 -11.69141 -11.42180 -11.23509 -11.17303 -11.06688 -10.90748 -10.75396 -10.66701 -10.65633 -10.44041 -9.90981 -9.70830 -9.46280 -9.32655 -9.05809 -8.99174 -8.36729 -7.23404 -5.97191 -3.96881 3.33247 3.40772 3.43905 3.45164 4.13569 4.33148 4.46778 4.61630 4.74761 4.78810 4.87888 5.06323 5.17898 5.20607 5.29048 5.38169 5.48398 5.57566 5.69262 5.73642 5.77345 5.79135 5.83932 5.85912 5.96746 6.05548 6.17132 6.19577 6.22879 6.23323 6.36443 6.42417 6.62305 6.71415 6.73954 7.01725 7.28362 7.44010 7.91347 8.17095 8.27101 8.61210 9.10453 9.66054 11.13724 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.004072 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.082333 B = 6874.806392 C = 7167.168435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.496 4.496 8 H 0.069 0.931 9 C 0.195 3.805 10 N -0.512 5.512 11 C 0.064 3.936 12 C -0.082 4.082 13 C -0.135 4.135 14 H 0.102 0.898 15 C -0.175 4.175 16 C -0.124 4.124 17 H 0.102 0.898 18 C -0.119 4.119 19 C -0.178 4.178 20 C -0.181 4.181 21 C 0.030 3.970 22 C -0.187 4.187 23 C -0.154 4.154 24 H 0.259 0.741 25 H 0.025 0.975 26 H -0.004 1.004 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 -17.282 1.170 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.535 4.535 8 H 0.087 0.913 9 C 0.070 3.930 10 N -0.237 5.237 11 C -0.065 4.065 12 C -0.120 4.120 13 C -0.154 4.154 14 H 0.120 0.880 15 C -0.211 4.211 16 C -0.142 4.142 17 H 0.120 0.880 18 C -0.137 4.137 19 C -0.215 4.215 20 C -0.218 4.218 21 C -0.080 4.080 22 C -0.225 4.225 23 C -0.191 4.191 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.014 0.986 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.036 -17.049 1.491 18.148 hybrid contribution -0.469 0.755 -0.552 1.046 sum 5.568 -16.294 0.939 17.245 Atomic orbital electron populations 1.69969 1.06038 1.26462 1.51713 1.24989 0.94824 0.99201 0.95811 0.86505 0.80129 0.83751 0.77423 1.19645 1.21218 1.21149 1.21305 0.93624 0.89680 1.48886 0.91345 1.19711 0.89859 0.87457 0.95982 1.61907 1.38706 1.03318 1.19738 1.21969 0.94752 0.90057 0.99692 1.21194 0.98164 0.91284 1.01373 1.22452 1.00736 0.90109 1.02085 0.88000 1.23086 1.02120 1.01989 0.93951 1.21804 0.97108 0.99326 0.96001 0.88021 1.21722 0.96852 0.98769 0.96377 1.22926 1.02865 1.01666 0.94004 1.22925 1.02212 0.93093 1.03583 1.22021 0.90481 1.04157 0.91307 1.23037 0.98115 0.99413 1.01895 1.23066 1.02449 0.92358 1.01265 0.93135 0.95728 0.98631 0.91526 0.96103 0.91660 0.91267 0.89236 0.88893 0.88026 0.88656 0.88934 0.89062 0.88883 0.91582 0.89055 0.90372 0.90219 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.50 -13.80 8.04 -34.44 -0.28 -14.08 16 8 H 0.07 1.88 5.49 -52.49 -0.29 1.59 16 9 C 0.19 5.10 4.75 -4.98 -0.02 5.08 16 10 N -0.51 -11.08 4.58 -228.09 -1.04 -12.13 16 11 C 0.06 1.16 4.91 -3.82 -0.02 1.14 16 12 C -0.08 -1.23 5.25 -26.73 -0.14 -1.37 16 13 C -0.14 -1.71 5.46 -90.61 -0.49 -2.20 16 14 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 15 C -0.17 -1.95 9.90 -26.73 -0.26 -2.21 16 16 C -0.12 -1.38 5.57 -90.61 -0.50 -1.88 16 17 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 18 C -0.12 -1.19 5.85 -90.62 -0.53 -1.72 16 19 C -0.18 -1.64 10.25 -26.75 -0.27 -1.92 16 20 C -0.18 -1.57 10.25 -26.75 -0.27 -1.85 16 21 C 0.03 0.59 4.27 -67.71 -0.29 0.30 16 22 C -0.19 -3.10 8.92 -26.69 -0.24 -3.34 16 23 C -0.15 -2.97 9.40 -26.69 -0.25 -3.22 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.69 7.77 -51.93 -0.40 0.28 16 26 H 0.00 -0.12 8.03 -51.93 -0.42 -0.54 16 27 H 0.07 1.23 7.84 -51.93 -0.41 0.83 16 28 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.06 0.97 6.11 -51.93 -0.32 0.65 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.02 8.03 -51.93 -0.42 0.61 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 42 H 0.11 2.45 5.63 -51.93 -0.29 2.16 16 LS Contribution 338.09 15.07 5.10 5.10 Total: -1.00 -29.02 338.09 -11.50 -40.53 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.59 Total: 1.93 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -3.68 Total: -25.88 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.31 Total: -38.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.02 -11.50 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714823443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.534 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds