Wall clock time and date at job start Mon Mar 30 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48502 * 109.47466 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47599 * 300.00392 * 3 2 1 6 6 H 1.48508 * 109.46975 * 59.99895 * 3 2 1 7 7 C 1.37874 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00390 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99875 * 359.71986 * 7 2 1 10 10 N 1.46898 * 109.47258 * 174.98630 * 9 7 2 11 11 C 1.46907 * 111.00127 * 162.29668 * 10 9 7 12 12 C 1.52998 * 109.47218 * 190.00469 * 11 10 9 13 13 C 1.52997 * 109.46780 * 180.02562 * 12 11 10 14 14 H 1.08996 * 115.54978 * 330.66312 * 13 12 11 15 15 C 1.53006 * 117.49796 * 116.38010 * 13 12 11 16 16 C 1.53000 * 60.00197 * 107.48364 * 15 13 12 17 17 H 1.08999 * 117.50325 * 252.50739 * 16 15 13 18 18 C 1.53004 * 117.51926 * 107.47627 * 16 15 13 19 19 C 1.53004 * 117.50097 * 179.97438 * 18 16 15 20 20 C 1.52995 * 117.49709 * 111.36934 * 18 16 15 21 21 C 1.46892 * 111.00290 * 286.25587 * 10 9 7 22 22 C 1.53004 * 117.50273 * 142.07092 * 21 10 9 23 23 C 1.53002 * 117.49991 * 73.41330 * 21 10 9 24 24 H 0.97001 * 120.00093 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47190 * 294.99020 * 9 7 2 26 26 H 1.08998 * 109.46878 * 54.99095 * 9 7 2 27 27 H 1.08993 * 109.47167 * 310.00455 * 11 10 9 28 28 H 1.08998 * 109.46507 * 70.00553 * 11 10 9 29 29 H 1.09007 * 109.47050 * 300.00213 * 12 11 10 30 30 H 1.08994 * 109.47150 * 59.99658 * 12 11 10 31 31 H 1.09004 * 117.49414 * 214.97397 * 15 13 12 32 32 H 1.08992 * 117.49797 * 359.97438 * 15 13 12 33 33 H 1.08999 * 115.54625 * 325.70581 * 18 16 15 34 34 H 1.09004 * 117.49517 * 0.02562 * 19 18 16 35 35 H 1.08992 * 117.49690 * 145.02419 * 19 18 16 36 36 H 1.09001 * 117.50237 * 214.98298 * 20 18 16 37 37 H 1.09002 * 117.50395 * 0.02562 * 20 18 16 38 38 H 1.08996 * 115.55148 * 287.74029 * 21 10 9 39 39 H 1.09010 * 117.49637 * 359.97438 * 22 21 10 40 40 H 1.08992 * 117.50225 * 145.01750 * 22 21 10 41 41 H 1.09007 * 117.49341 * 214.97933 * 23 21 10 42 42 H 1.08995 * 117.49888 * 359.96803 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0053 10 7 2.2004 -3.6133 -0.1176 11 6 1.5826 -4.8798 0.2977 12 6 2.6578 -5.9638 0.3957 13 6 2.0141 -7.2829 0.8276 14 1 1.1239 -7.1901 1.4495 15 6 2.0694 -8.4519 -0.1580 16 6 2.9440 -8.4676 1.0973 17 1 4.0143 -8.3073 0.9671 18 6 2.5529 -9.4314 2.2194 19 6 3.4282 -9.4473 3.4742 20 6 3.4827 -10.6162 2.4891 21 6 2.7268 -3.7080 -1.4857 22 6 4.2003 -4.0857 -1.6512 23 6 3.7417 -2.6515 -1.9269 24 1 -0.4850 0.8400 0.0004 25 1 0.6973 -2.5949 0.9393 26 1 0.5552 -2.5206 -0.8335 27 1 1.1073 -4.7505 1.2700 28 1 0.8334 -5.1763 -0.4364 29 1 3.1331 -6.0930 -0.5767 30 1 3.4070 -5.6671 1.1297 31 1 1.2151 -9.1284 -0.1846 32 1 2.5639 -8.2811 -1.1141 33 1 1.4827 -9.5918 2.3496 34 1 4.2825 -8.7707 3.5005 35 1 2.9339 -9.6176 4.4305 36 1 3.0242 -11.5559 2.7971 37 1 4.3732 -10.7088 1.8674 38 1 2.0258 -4.0762 -2.2347 39 1 4.7792 -4.2634 -0.7448 40 1 4.4686 -4.7019 -2.5092 41 1 3.7085 -2.3249 -2.9663 42 1 4.0184 -1.8858 -1.2022 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714823443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:43 Heat of formation + Delta-G solvation = 54.644912 kcal Electronic energy + Delta-G solvation = -17993.714979 eV Core-core repulsion = 15361.207646 eV Total energy + Delta-G solvation = -2632.507333 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88044 -39.06092 -36.62040 -35.34687 -34.41396 -31.34571 -28.28509 -24.69785 -24.24174 -23.92996 -23.13631 -23.05947 -21.30307 -21.13699 -20.75040 -18.54045 -16.76095 -16.68661 -16.47613 -16.25576 -16.04762 -15.32740 -14.70668 -14.48893 -14.32111 -13.92231 -13.73470 -13.40910 -13.00265 -12.70283 -12.61750 -12.39903 -12.37029 -12.26494 -12.16974 -12.03291 -11.91858 -11.69743 -11.42955 -11.19654 -10.99805 -10.71181 -10.56532 -10.51431 -10.14040 -9.02902 -8.15697 -6.23584 1.41198 1.41807 1.55101 2.41987 2.62320 3.05632 3.16342 3.22767 3.30920 3.59168 3.93992 3.96357 4.17425 4.20123 4.24068 4.27760 4.34083 4.37778 4.45612 4.52009 4.59343 4.68695 4.81130 4.83202 4.89072 4.92999 5.01499 5.07018 5.10174 5.14949 5.20608 5.26659 5.29645 5.30575 5.37347 5.41419 5.48090 5.52378 5.78811 6.11574 6.43366 6.67636 6.92796 7.44685 8.95686 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.004072 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.082333 B = 6874.806392 C = 7167.168435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.209 3.791 10 N -0.516 5.516 11 C 0.064 3.936 12 C -0.064 4.064 13 C -0.153 4.153 14 H 0.096 0.904 15 C -0.166 4.166 16 C -0.111 4.111 17 H 0.104 0.896 18 C -0.134 4.134 19 C -0.182 4.182 20 C -0.169 4.169 21 C 0.002 3.998 22 C -0.142 4.142 23 C -0.169 4.169 24 H 0.261 0.739 25 H -0.003 1.003 26 H -0.038 1.038 27 H 0.054 0.946 28 H 0.016 0.984 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.785 -18.559 0.737 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.543 4.543 8 H 0.090 0.910 9 C 0.083 3.917 10 N -0.240 5.240 11 C -0.064 4.064 12 C -0.102 4.102 13 C -0.171 4.171 14 H 0.114 0.886 15 C -0.203 4.203 16 C -0.130 4.130 17 H 0.122 0.878 18 C -0.152 4.152 19 C -0.219 4.219 20 C -0.206 4.206 21 C -0.107 4.107 22 C -0.180 4.180 23 C -0.206 4.206 24 H 0.070 0.930 25 H 0.015 0.985 26 H -0.021 1.021 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.034 -18.351 1.058 20.060 hybrid contribution -1.110 1.095 -0.414 1.613 sum 6.924 -17.256 0.645 18.605 Atomic orbital electron populations 1.70107 1.07783 1.27523 1.52772 1.25902 0.95656 1.03085 0.95344 0.85396 0.79204 0.78929 0.77491 1.18426 1.20665 1.20731 1.21600 0.93881 0.90459 1.48368 0.90989 1.19371 0.89860 0.89396 0.93095 1.61861 1.37315 1.03403 1.21437 1.22040 0.95920 0.89728 0.98712 1.20983 0.96676 0.91067 1.01482 1.22300 1.01357 0.89709 1.03770 0.88599 1.23154 1.02436 1.00663 0.94019 1.21816 0.96882 0.97975 0.96290 0.87821 1.21747 0.97233 0.99691 0.96540 1.22994 1.02607 1.02120 0.94221 1.23000 1.01763 0.93097 1.02745 1.22138 0.92216 1.06213 0.90135 1.23071 0.94530 0.97303 1.03058 1.23037 1.03065 0.93153 1.01366 0.92978 0.98521 1.02051 0.92724 0.96523 0.91068 0.92014 0.88287 0.88390 0.87985 0.88983 0.88222 0.87778 0.88419 0.91784 0.88730 0.86821 0.88794 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.50 -28.73 8.04 25.60 0.21 -28.53 16 8 H 0.07 3.99 5.49 -2.91 -0.02 3.97 16 9 C 0.21 11.46 4.75 85.56 0.41 11.87 16 10 N -0.52 -22.82 4.58 -875.54 -4.01 -26.83 16 11 C 0.06 2.39 4.91 86.30 0.42 2.82 16 12 C -0.06 -1.87 5.25 30.59 0.16 -1.71 16 13 C -0.15 -3.71 5.46 -10.79 -0.06 -3.77 16 14 H 0.10 2.44 8.07 -2.39 -0.02 2.42 16 15 C -0.17 -3.36 9.90 30.60 0.30 -3.06 16 16 C -0.11 -2.26 5.57 -10.79 -0.06 -2.32 16 17 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.13 -2.43 5.85 -10.79 -0.06 -2.49 16 19 C -0.18 -3.06 10.25 30.58 0.31 -2.74 16 20 C -0.17 -2.52 10.25 30.58 0.31 -2.21 16 21 C 0.00 0.08 4.27 44.92 0.19 0.27 16 22 C -0.14 -4.33 8.92 30.62 0.27 -4.06 16 23 C -0.17 -6.34 9.40 30.62 0.29 -6.05 16 24 H 0.26 15.11 8.31 -92.71 -0.77 14.33 16 25 H 0.00 -0.19 7.77 -2.39 -0.02 -0.21 16 26 H -0.04 -2.32 8.03 -2.39 -0.02 -2.34 16 27 H 0.05 2.13 7.84 -2.39 -0.02 2.11 16 28 H 0.02 0.63 8.12 -2.39 -0.02 0.61 16 29 H 0.07 1.97 6.11 -2.38 -0.01 1.95 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.10 1.82 8.14 -2.38 -0.02 1.81 16 32 H 0.10 1.90 8.03 -2.39 -0.02 1.88 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 40 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 42 H 0.09 3.76 5.63 -2.39 -0.01 3.74 16 Total: -1.00 -63.58 338.09 2.42 -61.16 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.96 Total: 17.93 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 3.16 Total: -41.69 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -3.72 Total: -84.30 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.58 2.42 -61.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714823443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.804 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds