Wall clock time and date at job start Mon Mar 30 2020 06:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48499 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47002 * 299.99734 * 3 2 1 6 6 H 1.48496 * 109.47031 * 59.99837 * 3 2 1 7 7 C 1.37882 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99775 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00028 * 359.72327 * 7 2 1 10 10 N 1.46898 * 109.46973 * 174.98389 * 9 7 2 11 11 C 1.46900 * 110.99853 * 162.29629 * 10 9 7 12 12 C 1.53008 * 109.47094 * 190.00089 * 11 10 9 13 13 C 1.52996 * 109.46916 * 180.02562 * 12 11 10 14 14 H 1.08999 * 115.55548 * 330.67636 * 13 12 11 15 15 C 1.53001 * 117.49563 * 116.37877 * 13 12 11 16 16 C 1.53004 * 60.00088 * 107.49038 * 15 13 12 17 17 H 1.09001 * 117.49881 * 107.48550 * 16 15 13 18 18 C 1.52995 * 117.51921 * 252.52232 * 16 15 13 19 19 C 1.52999 * 117.50100 * 197.37514 * 18 16 15 20 20 C 1.52991 * 117.50135 * 128.71200 * 18 16 15 21 21 C 1.46892 * 111.00290 * 286.25458 * 10 9 7 22 22 C 1.53004 * 117.50273 * 142.07092 * 21 10 9 23 23 C 1.53002 * 117.49991 * 73.41330 * 21 10 9 24 24 H 0.97011 * 120.00025 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47226 * 294.98627 * 9 7 2 26 26 H 1.08998 * 109.47125 * 54.98877 * 9 7 2 27 27 H 1.08993 * 109.47279 * 310.00330 * 11 10 9 28 28 H 1.08998 * 109.46679 * 70.00602 * 11 10 9 29 29 H 1.08993 * 109.47254 * 300.00256 * 12 11 10 30 30 H 1.08998 * 109.46939 * 60.00672 * 12 11 10 31 31 H 1.09004 * 117.49786 * 214.97638 * 15 13 12 32 32 H 1.08997 * 117.50354 * 0.02562 * 15 13 12 33 33 H 1.09003 * 115.54805 * 343.04269 * 18 16 15 34 34 H 1.09000 * 117.49399 * 359.97438 * 19 18 16 35 35 H 1.08994 * 117.50175 * 145.01502 * 19 18 16 36 36 H 1.09001 * 117.49891 * 214.97850 * 20 18 16 37 37 H 1.08999 * 117.49923 * 359.97438 * 20 18 16 38 38 H 1.08996 * 115.55148 * 287.74029 * 21 10 9 39 39 H 1.09010 * 117.49637 * 359.97438 * 22 21 10 40 40 H 1.08992 * 117.50225 * 145.01750 * 22 21 10 41 41 H 1.09007 * 117.49341 * 214.97933 * 23 21 10 42 42 H 1.08995 * 117.49888 * 359.96803 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0074 10 7 2.2003 -3.6134 -0.1145 11 6 1.5824 -4.8794 0.3019 12 6 2.6577 -5.9635 0.4007 13 6 2.0140 -7.2822 0.8337 14 1 1.1236 -7.1890 1.4555 15 6 2.0692 -8.4520 -0.1509 16 6 2.9438 -8.4668 1.1044 17 1 2.6649 -9.1530 1.9041 18 6 4.4461 -8.2417 0.9220 19 6 5.3667 -8.6505 2.0736 20 6 5.1099 -7.1689 1.7874 21 6 2.7267 -3.7093 -1.4825 22 6 4.2002 -4.0871 -1.6477 23 6 3.7417 -2.6532 -1.9246 24 1 -0.4851 0.8401 -0.0004 25 1 0.6972 -2.5941 0.9415 26 1 0.5551 -2.5214 -0.8313 27 1 1.1072 -4.7494 1.2741 28 1 0.8333 -5.1766 -0.4320 29 1 3.1329 -6.0936 -0.5715 30 1 3.4068 -5.6663 1.1346 31 1 1.2149 -9.1286 -0.1771 32 1 2.5644 -8.2823 -1.1069 33 1 4.8212 -8.3728 -0.0930 34 1 4.9019 -9.0794 2.9614 35 1 6.3475 -9.0501 1.8164 36 1 5.9221 -6.5943 1.3419 37 1 4.4763 -6.6230 2.4864 38 1 2.0257 -4.0781 -2.2312 39 1 4.7791 -4.2641 -0.7411 40 1 4.4685 -4.7041 -2.5052 41 1 3.7084 -2.3275 -2.9643 42 1 4.0183 -1.8869 -1.2005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714823446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:46 Heat of formation + Delta-G solvation = 72.375803 kcal Electronic energy + Delta-G solvation = -18471.359594 eV Core-core repulsion = 15839.621130 eV Total energy + Delta-G solvation = -2631.738464 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.02065 -37.57385 -35.33590 -33.60155 -32.51064 -29.77673 -26.37081 -23.74261 -22.90045 -22.21927 -22.11025 -21.58252 -20.92546 -19.31817 -18.99872 -16.49351 -15.63555 -15.39648 -14.84861 -14.77023 -14.58264 -14.16358 -13.46638 -13.05945 -12.66654 -12.62566 -11.98802 -11.87891 -11.48949 -11.38052 -11.14345 -11.11358 -10.94739 -10.81283 -10.74789 -10.61683 -10.43511 -10.39679 -9.89249 -9.64388 -9.45832 -9.31901 -9.04245 -9.00477 -8.36268 -7.21873 -5.96816 -3.96414 3.33398 3.40941 3.45145 3.63392 3.99331 4.44406 4.55455 4.63327 4.73586 4.90313 4.95293 5.09327 5.14277 5.35303 5.38514 5.45409 5.59738 5.62413 5.70656 5.79233 5.80480 5.86589 5.87885 5.93636 6.11019 6.16952 6.21321 6.21654 6.24680 6.26694 6.37286 6.44191 6.66389 6.74760 6.78791 7.02767 7.29291 7.44943 7.91984 8.17956 8.28345 8.62182 9.10972 9.66503 11.14094 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.004849 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.946538 B = 5773.274011 C = 5974.450402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.496 4.496 8 H 0.068 0.932 9 C 0.195 3.805 10 N -0.511 5.511 11 C 0.062 3.938 12 C -0.082 4.082 13 C -0.137 4.137 14 H 0.100 0.900 15 C -0.175 4.175 16 C -0.126 4.126 17 H 0.100 0.900 18 C -0.118 4.118 19 C -0.184 4.184 20 C -0.169 4.169 21 C 0.031 3.969 22 C -0.185 4.185 23 C -0.155 4.155 24 H 0.259 0.741 25 H 0.024 0.976 26 H -0.005 1.005 27 H 0.065 0.935 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 -15.774 0.373 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.070 3.930 10 N -0.236 5.236 11 C -0.066 4.066 12 C -0.120 4.120 13 C -0.156 4.156 14 H 0.118 0.882 15 C -0.212 4.212 16 C -0.144 4.144 17 H 0.118 0.882 18 C -0.136 4.136 19 C -0.221 4.221 20 C -0.206 4.206 21 C -0.078 4.078 22 C -0.223 4.223 23 C -0.192 4.192 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.013 0.987 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.537 -15.541 0.695 17.286 hybrid contribution -0.500 0.742 -0.585 1.069 sum 7.037 -14.799 0.110 16.388 Atomic orbital electron populations 1.69973 1.06042 1.26440 1.51745 1.24987 0.94810 0.99178 0.95818 0.86511 0.80137 0.83787 0.77421 1.19647 1.21215 1.21164 1.21305 0.93615 0.89680 1.48845 0.91354 1.19706 0.89869 0.87489 0.95943 1.61902 1.38648 1.03303 1.19710 1.22000 0.94883 0.90215 0.99539 1.21235 0.98100 0.90960 1.01699 1.22468 1.00322 0.90602 1.02202 0.88156 1.23093 1.01846 1.02123 0.94163 1.21785 0.90619 1.02065 0.99917 0.88212 1.21621 0.91678 1.04502 0.95833 1.22988 1.00479 0.98740 0.99882 1.22991 1.02970 0.91310 1.03356 1.22003 0.90474 1.04085 0.91286 1.23022 0.98120 0.99290 1.01862 1.23068 1.02534 0.92400 1.01224 0.93149 0.95773 0.98676 0.91674 0.96267 0.91696 0.90548 0.89287 0.88930 0.88080 0.89108 0.89215 0.88847 0.88289 0.91681 0.89018 0.90460 0.90269 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.50 -13.77 8.04 -34.44 -0.28 -14.04 16 8 H 0.07 1.87 5.50 -52.49 -0.29 1.58 16 9 C 0.19 5.10 4.75 -4.98 -0.02 5.07 16 10 N -0.51 -11.03 4.58 -228.09 -1.04 -12.07 16 11 C 0.06 1.13 4.91 -3.82 -0.02 1.11 16 12 C -0.08 -1.22 4.20 -26.73 -0.11 -1.33 16 13 C -0.14 -1.73 5.72 -90.62 -0.52 -2.25 16 14 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 15 C -0.18 -1.95 9.90 -26.73 -0.26 -2.22 16 16 C -0.13 -1.39 5.87 -90.62 -0.53 -1.92 16 17 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 18 C -0.12 -1.27 5.25 -90.63 -0.48 -1.74 16 19 C -0.18 -1.77 10.26 -26.69 -0.27 -2.04 16 20 C -0.17 -1.86 8.44 -26.70 -0.23 -2.09 16 21 C 0.03 0.61 4.27 -67.71 -0.29 0.32 16 22 C -0.19 -3.06 8.92 -26.69 -0.24 -3.30 16 23 C -0.16 -2.99 9.40 -26.69 -0.25 -3.24 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.67 7.77 -51.93 -0.40 0.27 16 26 H 0.00 -0.13 8.03 -51.93 -0.42 -0.55 16 27 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16 28 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 29 H 0.06 0.98 6.11 -51.93 -0.32 0.66 16 30 H 0.08 1.17 5.64 -51.93 -0.29 0.88 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.04 8.03 -51.93 -0.42 0.63 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.18 7.31 -51.93 -0.38 0.80 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 42 H 0.11 2.44 5.63 -51.93 -0.29 2.15 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -28.93 331.88 -11.34 -40.27 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.42 Total: 2.63 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -3.60 Total: -26.27 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.31 Total: -38.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.93 -11.34 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714823446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.648 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds